Rh6BG362700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015762
Physical Location & Seq
Forward (+)
59278593 .. 59283360
4768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG362700.1

Sequence Viewer

Length: 333 bp
ATGATGATGGTTCAGCAAAAAATACTCTTATCAAGTGCAGGGAAGAAAACGATGGAGTACACAGTGCCATTAGCAGAGAAGACTAAAGACATGGCCATGTTTGCAGGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAGGACAAGGCCACTGTTGTAGGTTGGACTGCAGCGCACTACGCAACTGAGGCAGCAGTGGAGGGAACCAAAGCAGCTGCAAGGTTGGAGCTCAAATGCACAGCAAGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGGGGATACTAGAACATGATCTACTTAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.87

Weight (kDa)

8.93

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 227, 241, 274
AluI AGCT 3 cut(s) 227, 241, 274
Alw21I GWGCWC 2 cut(s) 243, 276
AoxI GGCC 2 cut(s) 93, 159
ApeKI GCWGC 4 cut(s) 182, 203, 224, 227
AspLEI GCGC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 95
BanII GRGCYC 2 cut(s) 243, 276
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 243, 276
BbvI GCAGC 4 cut(s) 194, 214, 215, 236
BccI CCATC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 297
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 4 cut(s) 183, 204, 225, 228
BlsI GCNGC 4 cut(s) 184, 205, 226, 229
BmiI GGNNCC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 86
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 194, 214, 215, 236
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 2 cut(s) 95, 161
BsiHKAI GWGCWC 2 cut(s) 243, 276
BsnI GGCC 2 cut(s) 95, 161
Bsp1286I GDGCHC 2 cut(s) 243, 276
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 95, 161
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 95
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 64, 166
BstDEI CTNAG 2 cut(s) 198, 323
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 5 cut(s) 101, 191, 200, 260, 293
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 194, 214, 215, 236
BstV2I GAAGAC 1 cut(s) 86
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 95, 161
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 69, 162, 213
BveI ACCTGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 58
CviAII CATG 4 cut(s) 91, 97, 134, 314
CviJI RGCY 5 cut(s) 95, 161, 227, 241, 274
CviKI_1 RGCY 5 cut(s) 95, 161, 227, 241, 274
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 198, 323
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 93
Ecl136II GAGCTC 2 cut(s) 241, 274
Eco24I GRGCYC 2 cut(s) 243, 276
Eco53kI GAGCTC 2 cut(s) 241, 274
EcoICRI GAGCTC 2 cut(s) 241, 274
EcoT38I GRGCYC 2 cut(s) 243, 276
FaeI CATG 4 cut(s) 94, 100, 137, 317
FaiI YATR 5 cut(s) 92, 98, 126, 135, 315
FatI CATG 4 cut(s) 90, 96, 133, 313
Fnu4HI GCNGC 4 cut(s) 183, 204, 225, 228
FriOI GRGCYC 2 cut(s) 243, 276
Fsp4HI GCNGC 4 cut(s) 183, 204, 225, 228
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 186
GluI GCNGC 4 cut(s) 183, 204, 225, 228
HaeIII GGCC 2 cut(s) 95, 161
HhaI GCGC 1 cut(s) 187
Hin1II CATG 4 cut(s) 94, 100, 137, 317
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 64, 166
HpyCH4V TGCA 7 cut(s) 38, 104, 121, 182, 230, 249, 282
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 191, 200, 260, 293
HpyF3I CTNAG 2 cut(s) 198, 323
Hsp92II CATG 4 cut(s) 94, 100, 137, 317
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 238, 271
LpnPI CCDG 4 cut(s) 24, 90, 249, 282
Lsp1109I GCAGC 4 cut(s) 194, 214, 215, 236
MaeI CTAG 1 cut(s) 308
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 55, 91
MhlI GDGCHC 2 cut(s) 243, 276
MlsI TGGCCA 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 155, 216
MnlI CCTC 4 cut(s) 193, 205, 252, 286
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 227
MwoI GCNNNNNNNGC 5 cut(s) 101, 191, 200, 260, 293
NdeII GATC 1 cut(s) 316
NlaIII CATG 4 cut(s) 94, 100, 137, 317
NlaIV GGNNCC 1 cut(s) 217
PkrI GCNGC 4 cut(s) 184, 205, 226, 229
Psp124BI GAGCTC 2 cut(s) 243, 276
PspN4I GGNNCC 1 cut(s) 217
PsrI GAACNNNNNNTAC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 2 cut(s) 243, 276
SatI GCNGC 4 cut(s) 183, 204, 225, 228
Sau3AI GATC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 243, 276
SetI ASST 6 cut(s) 109, 175, 229, 236, 243, 276
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 95
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 2 cut(s) 243, 276
TaaI ACNGT 2 cut(s) 64, 166
TatI WGTACW 1 cut(s) 57
TscAI CASTG 3 cut(s) 69, 169, 213
TseI GCWGC 4 cut(s) 182, 203, 224, 227
TspRI CASTG 3 cut(s) 69, 169, 213
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.