Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Reverse (-)

20823110 .. 20826373

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG222700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTTCCGAGGCAGAGAAAGCTGGTTGAGGACCCTTTGCAGTATGTGGACCAGTCACAGAGGTGGAAGATCAAGAGCTCTTTTGGAGATATTGGCCTTACTTATAGAGACAATGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTTTCTGCTTGTCATAGAGTACTCAAGGAGGTTCGTACAAGGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGAGTTCGGCTTTCTATCCTATTGTGATGGTTCATGCATATTCGAGGAGTAACTGGCTAAAGCAGATTCTTCACTGTTTTTATGTTCTAATCTTAGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGAATCAACAATTCAGAGAGAGAACATGACCTTGTAATTGCTGTAAGTTGTGTTTATCTAGAACATCTATCAATTACAAACTTAATTTTTCTCTTGGCATTTTTGGTCCTAATAATATCTGTTGTTTGTTACTATGGATTGAAGTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTAGGGATCTTACGCGGGAAGTCTTGAAATGCCGTAAATCCAAGGCTGCAATTGATGAAACTTCCAAGGACTTGGTAGTGGCTAGAAAAAGTGGTGCCTATATAGTTGCTCTTTGCTCTCACGATGGGGCATGTCCTTTGGAGAAAGCAGGCAAATATTGTCATTTTGTTCAACGTTTGGAGAGAACTTCTACACAGCTTGCATACAAGTTAATTTTGGAACTTGGTCCGTACATTGAGAAGCTCACAAAAACAGGAGGTGCCATAAAGGAGTTTGTTAACCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

294

Amino Acids

33.31

Weight (kDa)

9.46

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	39 - 144	4.2e-09	Mitochondrial small ribosomal subunit Rsm22
Rsm22	PF09243	180 - 267	5.7e-09	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	689, 854
AccII	CGCG	1 cut(s)	610
AciI	CCGC	1 cut(s)	610
AclI	AACGTT	1 cut(s)	769
AclWI	GGATC	2 cut(s)	579, 609
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	4 cut(s)	174, 190, 588, 827
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	535, 622, 767
AjnI	CCWGG	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	61
AluBI	AGCT	5 cut(s)	22, 78, 149, 793, 838
AluI	AGCT	5 cut(s)	22, 78, 149, 793, 838
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	102, 110
AlwI	GGATC	2 cut(s)	579, 609
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	196, 641
AspS9I	GGNCC	4 cut(s)	31, 49, 499, 821
AvaII	GGWCC	4 cut(s)	31, 49, 499, 821
BanI	GGYRCC	2 cut(s)	689, 854
BanII	GRGCYC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	183, 628
BccI	CCATC	3 cut(s)	262, 568, 713
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	102, 110
BfaI	CTAG	2 cut(s)	452, 678
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	2 cut(s)	197, 642
BlsI	GCNGC	2 cut(s)	198, 643
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	4 cut(s)	31, 49, 499, 821
BmgT120I	GGNCC	4 cut(s)	31, 49, 499, 821
BmiI	GGNNCC	4 cut(s)	6, 33, 691, 856
BmrFI	CCNGG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	8, 636, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	52, 299
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	8, 636, 660
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	52, 299
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	183, 628
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	2 cut(s)	689, 854
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	102, 110
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	69, 571, 601
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	4 cut(s)	6, 33, 691, 856
BspPI	GGATC	2 cut(s)	579, 609
BspT107I	GGYRCC	2 cut(s)	689, 854
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	52, 299
BssECI	CCNNGG	3 cut(s)	8, 636, 660
BssMI	GATC	3 cut(s)	69, 571, 601
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	636, 660
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	317, 365, 583
BstC8I	GCNNGC	4 cut(s)	147, 238, 745, 795
BstDEI	CTNAG	2 cut(s)	334, 596
BstFNI	CGCG	1 cut(s)	610
BstKTI	GATC	3 cut(s)	72, 574, 604
BstMAI	GTCTC	2 cut(s)	102, 110
BstMBI	GATC	3 cut(s)	69, 571, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 131
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	183, 628
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	4 cut(s)	147, 238, 745, 795
Cfr13I	GGNCC	4 cut(s)	31, 49, 499, 821
Csp6I	GTAC	4 cut(s)	173, 189, 587, 826
CviAII	CATG	3 cut(s)	275, 419, 726
CviQI	GTAC	4 cut(s)	173, 189, 587, 826
DdeI	CTNAG	2 cut(s)	334, 596
DpnI	GATC	3 cut(s)	71, 573, 603
DpnII	GATC	3 cut(s)	69, 571, 601
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	636, 660
Eco24I	GRGCYC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	4 cut(s)	31, 49, 499, 821
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	636, 660
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	2 cut(s)	636, 660
FaeI	CATG	3 cut(s)	278, 422, 729
FatI	CATG	3 cut(s)	274, 418, 725
FauI	CCCGC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	197, 642
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	197, 642
FspBI	CTAG	2 cut(s)	452, 678
GluI	GCNGC	2 cut(s)	197, 642
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	278, 422, 729
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	2 cut(s)	307, 396
HpaI	GTTAAC	1 cut(s)	874
Hpy166II	GTNNAC	2 cut(s)	49, 874
Hpy188I	TCNGA	3 cut(s)	9, 342, 409
Hpy188III	TCNNGA	5 cut(s)	73, 138, 452, 619, 716
Hpy8I	GTNNAC	2 cut(s)	49, 874
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	3 cut(s)	317, 365, 583
HpyCH4IV	ACGT	1 cut(s)	769
HpyCH4V	TGCA	4 cut(s)	40, 278, 644, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 131
HpyF3I	CTNAG	2 cut(s)	334, 596
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	3 cut(s)	278, 422, 729
KspAI	GTTAAC	1 cut(s)	874
Kzo9I	GATC	3 cut(s)	69, 571, 601
Lsp1109I	GCAGC	2 cut(s)	183, 628
MaeI	CTAG	2 cut(s)	452, 678
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	3 cut(s)	54, 290, 521
MalI	GATC	3 cut(s)	71, 573, 603
MboI	GATC	3 cut(s)	69, 571, 601
MboII	GAAGA	3 cut(s)	79, 302, 355
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	8 cut(s)	403, 429, 465, 477, 576, 645, 807, 880
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	7 cut(s)	3, 22, 54, 175, 279, 386, 845
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	5 cut(s)	350, 476, 806, 873, 883
MslI	CAYNNNNRTG	2 cut(s)	61, 366
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	2 cut(s)	19, 131
NdeII	GATC	3 cut(s)	69, 571, 601
NlaIII	CATG	3 cut(s)	278, 422, 729
NlaIV	GGNNCC	4 cut(s)	6, 33, 691, 856
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	729
OliI	CACNNNNGTG	1 cut(s)	61
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	307, 396
PkrI	GCNGC	2 cut(s)	198, 643
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	769
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	4 cut(s)	6, 33, 691, 856
PspPI	GGNCC	4 cut(s)	31, 49, 499, 821
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	174, 190, 588, 827
RsaNI	GTAC	4 cut(s)	173, 189, 587, 826
RseI	CAYNNNNRTG	2 cut(s)	61, 366
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	350, 476, 806, 873, 883
SatI	GCNGC	2 cut(s)	197, 642
Sau3AI	GATC	3 cut(s)	69, 571, 601
Sau96I	GGNCC	4 cut(s)	31, 49, 499, 821
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	4 cut(s)	31, 49, 499, 821
SmiMI	CAYNNNNRTG	2 cut(s)	61, 366
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	8 cut(s)	403, 429, 465, 477, 576, 645, 807, 880
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	2 cut(s)	452, 678
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	2 cut(s)	636, 660
TaaI	ACNGT	3 cut(s)	317, 365, 583
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	2 cut(s)	284, 574
TasI	AATT	8 cut(s)	403, 429, 465, 477, 576, 645, 807, 880
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	307, 396
Tru1I	TTAA	5 cut(s)	350, 476, 806, 873, 883
Tru9I	TTAA	5 cut(s)	350, 476, 806, 873, 883
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	196, 641
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	263, 666
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	1 cut(s)	320
VpaK11BI	GGWCC	4 cut(s)	31, 49, 499, 821
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	729
XspI	CTAG	2 cut(s)	452, 678
ZrmI	AGTACT	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.