Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Forward (+)

33459695 .. 33462251

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCAACTCTCAGCTTATTGCTTCCACTTCGAAACAGCTCGTTGAGGACCCTTTGCAGTATGTGGACCAGTCACAGAGGTGGAAGATCAAGAGCTCTTTTGGAGATATTGGCCTTACTTATAGAGGCGATGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTCTCTGCTTGTCACAGAGTACTCAAGGAGGTTCGTACAATGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGGGTTCGACTTTCTGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAAATCAGAGAGAGAACATGACCTTGTAATTGCTCAAAAAATACTCTTATCAAGTGCAGGGAAGAAAACGGTGGAGTACACAGTGCCATTAGCAGAGAAGACTAAAGACATGGCCATGTTTGCAGGTAAAACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAGGACAAGGCCACTGTGGTAGGTTGGACTGCAGCGCACTACGCAACTGAGGCAACAGTGGAGGGAACCAAAGCAGCTGCAAGGTTGGAGCTCAAATGCACAACAAGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGCGGATACTAGAACATGATCTACTTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

229

Amino Acids

25.51

Weight (kDa)

9.57

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	2 cut(s)	497, 658
AcoI	YGGCCR	1 cut(s)	450
AfaI	GTAC	3 cut(s)	191, 207, 416
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	15, 39, 95, 166, 584, 598, 631
AluI	AGCT	7 cut(s)	15, 39, 95, 166, 584, 598, 631
Alw21I	GWGCWC	3 cut(s)	97, 600, 633
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	3 cut(s)	111, 450, 516
ApeKI	GCWGC	4 cut(s)	213, 539, 581, 584
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	48, 66
AsuII	TTCGAA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	48, 66
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	3 cut(s)	97, 600, 633
BbsI	GAAGAC	2 cut(s)	162, 443
Bbv12I	GWGCWC	3 cut(s)	97, 600, 633
BbvI	GCAGC	4 cut(s)	200, 551, 571, 593
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	4 cut(s)	214, 540, 582, 585
BlsI	GCNGC	4 cut(s)	215, 541, 583, 586
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	2 cut(s)	48, 66
BmgT120I	GGNCC	2 cut(s)	48, 66
BmiI	GGNNCC	2 cut(s)	50, 574
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	162, 443
Bpu14I	TTCGAA	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	25, 546
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	4 cut(s)	200, 551, 571, 593
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	113, 452, 518
BsiHKAI	GWGCWC	3 cut(s)	97, 600, 633
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	113, 452, 518
Bso31I	GGTCTC	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	97, 600, 633
Bsp143I	GATC	2 cut(s)	86, 673
BspACI	CCGC	2 cut(s)	497, 658
BspANI	GGCC	3 cut(s)	113, 452, 518
BspCNI	CTCAG	2 cut(s)	24, 547
BspLI	GGNNCC	2 cut(s)	50, 574
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	86, 673
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	5 cut(s)	302, 409, 421, 523, 565
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	164, 255
BstDEI	CTNAG	3 cut(s)	11, 555, 680
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	89, 676
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	86, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 458, 548, 557, 650
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	200, 551, 571, 593
BstV2I	GAAGAC	2 cut(s)	162, 443
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	113, 452, 518
BtgZI	GCGATG	1 cut(s)	143
BtsIMutI	CAGTG	3 cut(s)	426, 519, 570
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	2 cut(s)	164, 255
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	48, 66
Csp6I	GTAC	3 cut(s)	190, 206, 415
CviAII	CATG	5 cut(s)	356, 448, 454, 491, 671
CviQI	GTAC	3 cut(s)	190, 206, 415
DdeI	CTNAG	3 cut(s)	11, 555, 680
DpnI	GATC	2 cut(s)	88, 675
DpnII	GATC	2 cut(s)	86, 673
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	673
Ecl136II	GAGCTC	3 cut(s)	95, 598, 631
Eco24I	GRGCYC	3 cut(s)	97, 600, 633
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	48, 66
Eco53kI	GAGCTC	3 cut(s)	95, 598, 631
EcoICRI	GAGCTC	3 cut(s)	95, 598, 631
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	3 cut(s)	97, 600, 633
FaeI	CATG	5 cut(s)	359, 451, 457, 494, 674
FatI	CATG	5 cut(s)	355, 447, 453, 490, 670
Fnu4HI	GCNGC	4 cut(s)	214, 540, 582, 585
FriOI	GRGCYC	3 cut(s)	97, 600, 633
Fsp4HI	GCNGC	4 cut(s)	214, 540, 582, 585
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	4 cut(s)	214, 540, 582, 585
HaeIII	GGCC	3 cut(s)	113, 452, 518
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	359, 451, 457, 494, 674
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	6, 66, 417
Hpy188I	TCNGA	2 cut(s)	279, 346
Hpy188III	TCNNGA	2 cut(s)	90, 155
Hpy8I	GTNNAC	3 cut(s)	6, 66, 417
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	5 cut(s)	302, 409, 421, 523, 565
HpyCH4V	TGCA	8 cut(s)	57, 395, 461, 478, 539, 587, 606, 639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 458, 548, 557, 650
HpyF3I	CTNAG	3 cut(s)	11, 555, 680
Hsp92II	CATG	5 cut(s)	359, 451, 457, 494, 674
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	2 cut(s)	86, 673
LmnI	GCTCC	2 cut(s)	595, 628
Lsp1109I	GCAGC	4 cut(s)	200, 551, 571, 593
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	71, 181
MalI	GATC	2 cut(s)	88, 675
MboI	GATC	2 cut(s)	86, 673
MboII	GAAGA	5 cut(s)	96, 162, 292, 412, 448
MhlI	GDGCHC	3 cut(s)	97, 600, 633
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	452
MmeI	TCCRAC	3 cut(s)	221, 512, 573
MnlI	CCTC	9 cut(s)	39, 71, 118, 192, 323, 550, 562, 609, 643
Mox20I	TGGCCA	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	3 cut(s)	78, 303, 452
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	2 cut(s)	166, 584
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	148, 458, 548, 557, 650
NdeII	GATC	2 cut(s)	86, 673
NlaIII	CATG	5 cut(s)	359, 451, 457, 494, 674
NlaIV	GGNNCC	2 cut(s)	50, 574
NmuCI	GTSAC	2 cut(s)	71, 181
NspV	TTCGAA	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	78
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	215, 541, 583, 586
PpuMI	RGGWCCY	1 cut(s)	48
Psp124BI	GAGCTC	3 cut(s)	97, 600, 633
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	50, 574
PspPI	GGNCC	2 cut(s)	48, 66
PspPPI	RGGWCCY	1 cut(s)	48
PsrI	GAACNNNNNNTAC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	166, 584
RsaI	GTAC	3 cut(s)	191, 207, 416
RsaNI	GTAC	3 cut(s)	190, 206, 415
RseI	CAYNNNNRTG	3 cut(s)	78, 303, 452
SacI	GAGCTC	3 cut(s)	97, 600, 633
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	214, 540, 582, 585
Sau3AI	GATC	2 cut(s)	86, 673
Sau96I	GGNCC	2 cut(s)	48, 66
ScaI	AGTACT	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	3 cut(s)	97, 600, 633
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	31
SinI	GGWCC	2 cut(s)	48, 66
SmiMI	CAYNNNNRTG	3 cut(s)	78, 303, 452
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	497, 658
SspMI	CTAG	1 cut(s)	665
SstI	GAGCTC	3 cut(s)	97, 600, 633
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	5 cut(s)	302, 409, 421, 523, 565
TaqI	TCGA	2 cut(s)	31, 265
TasI	AATT	1 cut(s)	366
TatI	WGTACW	2 cut(s)	189, 414
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	3 cut(s)	426, 526, 570
TseFI	GTSAC	2 cut(s)	71, 181
TseI	GCWGC	4 cut(s)	213, 539, 581, 584
Tsp45I	GTSAC	2 cut(s)	71, 181
TspRI	CASTG	3 cut(s)	426, 526, 570
VpaK11BI	GGWCC	2 cut(s)	48, 66
XspI	CTAG	1 cut(s)	665
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.