Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Reverse (-)

22646444 .. 22649726

Gene Structure 3283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTTCAGAGGCAGAGAAAGCTCGTTGAGGACCCTTTGCAGTATGTGGACCAGTCACAGAGGTGGAAGATCAAGAGCTCTTTTGGAGATATTGGCCTTACTTATAGAGACGATGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTCTCTGCTTGTCATAGAGTACTCAAGGAGGTTCGTACAAGGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGAGTTCGGCTTTCTATCCTATTGTGATGGTTCATGCATATTCGAGGAGTAACTGGCTAAAGCAGATTCTTCACTGTTTTTATGTTCTAATCTTAGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAATTCAGAGAGAGAACATGACCTTGTAATTGCTGTAAGTTGTGTTTATCTAGAACATCTCTCAATTACAAACTTAATTTTTCTCTTGGCATTTTTGGTCCTAATAATATATGTTGTTTGTTACTATGGGTTGAAGTCCTATGTGCTTGGAGAGATACCATCGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTAGGGATCTTACGCGGGAAGTCTTGAAATGCCGTAAATCTAAGGCTGCAATTGATGAAACTTCCAAGGACTTGGTAGTGGCTAGAAAAAGTGGTGCCTATATAGTTTCTCCTTGCTCTCACGATGGGGCATGTCCTTTGGAGAGAGCAGGTAAATATTGTCATTTTGTTCAATGTTTGGAGAGAACTTCTACACAGCTTGCATACAAGTTAATTTTGGAACTTGGTCCGTACATTGAGAAGCTCACAAAAACAGGAGGTGCCATAAAGGAGTTTGTTAACCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

300

Amino Acids

33.92

Weight (kDa)

9.17

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	39 - 123	7.9e-09	Mitochondrial small ribosomal subunit Rsm22
Rsm22	PF09243	229 - 273	8.4e-08	Mitochondrial small ribosomal subunit Rsm22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	752
AccB1I	GGYRCC	2 cut(s)	707, 872
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	1 cut(s)	628
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	2 cut(s)	597, 627
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	4 cut(s)	174, 190, 606, 845
AfiI	CCNNNNNNNGG	2 cut(s)	566, 616
AgsI	TTSAA	3 cut(s)	535, 640, 785
AjnI	CCWGG	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	61
AluBI	AGCT	5 cut(s)	22, 78, 149, 811, 856
AluI	AGCT	5 cut(s)	22, 78, 149, 811, 856
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	102, 110
AlwI	GGATC	2 cut(s)	597, 627
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	196, 659
AspS9I	GGNCC	4 cut(s)	31, 49, 499, 839
AvaII	GGWCC	4 cut(s)	31, 49, 499, 839
BanI	GGYRCC	2 cut(s)	707, 872
BanII	GRGCYC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	183, 646
BccI	CCATC	4 cut(s)	262, 568, 586, 731
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	102, 110
BfaI	CTAG	2 cut(s)	452, 696
BfmI	CTRYAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	2 cut(s)	197, 660
BlsI	GCNGC	2 cut(s)	198, 661
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	4 cut(s)	31, 49, 499, 839
BmgT120I	GGNCC	4 cut(s)	31, 49, 499, 839
BmiI	GGNNCC	3 cut(s)	33, 709, 874
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 616
Bse1I	ACTGG	2 cut(s)	52, 299
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	566, 616
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	52, 299
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	183, 646
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	2 cut(s)	707, 872
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	566, 616
BsmAI	GTCTC	2 cut(s)	102, 110
BsmBI	CGTCTC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	69, 589, 619
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	3 cut(s)	33, 709, 874
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	597, 627
BspT107I	GGYRCC	2 cut(s)	707, 872
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	52, 299
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	3 cut(s)	69, 589, 619
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	317, 365, 601
BstC8I	GCNNGC	3 cut(s)	147, 238, 813
BstDEI	CTNAG	3 cut(s)	334, 614, 654
BstFNI	CGCG	1 cut(s)	628
BstKTI	GATC	3 cut(s)	72, 592, 622
BstMAI	GTCTC	2 cut(s)	102, 110
BstMBI	GATC	3 cut(s)	69, 589, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 131
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	183, 646
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	2 cut(s)	546, 564
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	3 cut(s)	147, 238, 813
Cfr13I	GGNCC	4 cut(s)	31, 49, 499, 839
Csp6I	GTAC	4 cut(s)	173, 189, 605, 844
CviAII	CATG	3 cut(s)	275, 419, 744
CviQI	GTAC	4 cut(s)	173, 189, 605, 844
DdeI	CTNAG	3 cut(s)	334, 614, 654
DpnI	GATC	3 cut(s)	71, 591, 621
DpnII	GATC	3 cut(s)	69, 589, 619
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	4 cut(s)	31, 49, 499, 839
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	678
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	678
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	3 cut(s)	278, 422, 747
FatI	CATG	3 cut(s)	274, 418, 743
FauI	CCCGC	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	197, 660
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	197, 660
FspBI	CTAG	2 cut(s)	452, 696
GluI	GCNGC	2 cut(s)	197, 660
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	278, 422, 747
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	1 cut(s)	307
HpaI	GTTAAC	1 cut(s)	892
Hpy166II	GTNNAC	2 cut(s)	49, 892
Hpy188I	TCNGA	3 cut(s)	9, 342, 409
Hpy188III	TCNNGA	5 cut(s)	73, 138, 452, 637, 734
Hpy8I	GTNNAC	2 cut(s)	49, 892
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	3 cut(s)	317, 365, 601
HpyCH4V	TGCA	4 cut(s)	40, 278, 662, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 131
HpyF3I	CTNAG	3 cut(s)	334, 614, 654
Hsp92II	CATG	3 cut(s)	278, 422, 747
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	69, 589, 619
Lsp1109I	GCAGC	2 cut(s)	183, 646
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	452, 696
MaeIII	GTNAC	3 cut(s)	54, 290, 521
MalI	GATC	3 cut(s)	71, 591, 621
MboI	GATC	3 cut(s)	69, 589, 619
MboII	GAAGA	4 cut(s)	79, 145, 302, 355
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	8 cut(s)	403, 429, 465, 477, 594, 663, 825, 898
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	7 cut(s)	3, 22, 54, 175, 279, 386, 863
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	5 cut(s)	350, 476, 824, 891, 901
MslI	CAYNNNNRTG	2 cut(s)	61, 366
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	19, 131
NdeII	GATC	3 cut(s)	69, 589, 619
NlaIII	CATG	3 cut(s)	278, 422, 747
NlaIV	GGNNCC	3 cut(s)	33, 709, 874
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	747
OliI	CACNNNNGTG	1 cut(s)	61
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	198, 661
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	33, 709, 874
PspPI	GGNCC	4 cut(s)	31, 49, 499, 839
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	174, 190, 606, 845
RsaNI	GTAC	4 cut(s)	173, 189, 605, 844
RseI	CAYNNNNRTG	2 cut(s)	61, 366
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	350, 476, 824, 891, 901
SatI	GCNGC	2 cut(s)	197, 660
Sau3AI	GATC	3 cut(s)	69, 589, 619
Sau96I	GGNCC	4 cut(s)	31, 49, 499, 839
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	4 cut(s)	31, 49, 499, 839
SmiMI	CAYNNNNRTG	2 cut(s)	61, 366
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	8 cut(s)	403, 429, 465, 477, 594, 663, 825, 898
SsiI	CCGC	1 cut(s)	628
SspI	AATATT	1 cut(s)	770
SspMI	CTAG	2 cut(s)	452, 696
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	3 cut(s)	317, 365, 601
TaqI	TCGA	2 cut(s)	284, 592
TasI	AATT	8 cut(s)	403, 429, 465, 477, 594, 663, 825, 898
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	5 cut(s)	350, 476, 824, 891, 901
Tru9I	TTAA	5 cut(s)	350, 476, 824, 891, 901
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	196, 659
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	263, 684
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	4 cut(s)	31, 49, 499, 839
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	747
XspI	CTAG	2 cut(s)	452, 696
ZrmI	AGTACT	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.