Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Reverse (-)

18655661 .. 18662418

Gene Structure 6758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCCCGAATATGACTACCTGTTTAAGCTTTTGCTGATTGGTGATTCTGGTGTCGGCAAGTCATGTCTACTTCTGCGGTTTGCTGATGATTCATACTTGGATAGCTACATCAGCACAATTGGAGTTGACTTTAAAATCCGCACTGTGGAGCAGGATGGAAAGACTATCAAACTTCAAATTTGGGACACAGCTGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACCGTGGTGCGCATGGTATCATTGTTGTTTATGATGTCACAGACCAAGAGAGCTTCAACAATGTTAAGCAATGGTTGAACGAAATTGACCGTTATGCAAGTGAAAATGTGAACAAGCTTCTAGTTGGAAACAAGTGCGATCTCACAGCAAATAAAGTTGTGTCCACTGAGACAGCCAAGGCATTTGCAGATGAAATTGGAATTCCTTTTATGGAAACCAGTGCTAAGAATTCCACCAATGTTGAGCAGGCCTTCATGGCTATGGCTGCTGAGATTAAGAACAGGATGGCAAGCCAACCGATGAACAACGCCAGGCCTCCAACAGTGCAGATTCGTGGACAGCCTGTGAACCAAAAGTCTGGTTGCTGCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

202

Amino Acids

22.56

Weight (kDa)

5.52

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	7.7e-17	ADP-ribosylation factor family
Ras	PF00071	10 - 170	1.7e-69	Ras family
Roc	PF08477	10 - 124	3.4e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	45 - 166	1.6e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	2 cut(s)	79, 142
AclI	AACGTT	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	180, 432, 460
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	179, 289, 310
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	6 cut(s)	31, 108, 194, 228, 285, 349
AluI	AGCT	6 cut(s)	31, 108, 194, 228, 285, 349
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	196, 480, 545
ApeKI	GCWGC	3 cut(s)	225, 497, 597
ApoI	RAATTY	3 cut(s)	180, 432, 460
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	237, 484, 584
BccI	CCATC	2 cut(s)	152, 511
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	222, 353
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	226, 498, 598
BlsI	GCNGC	3 cut(s)	227, 499, 599
Bme1390I	CCNGG	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	235, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	235, 408
BseGI	GGATG	2 cut(s)	163, 522
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	390, 492
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	237, 484, 584
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	3 cut(s)	198, 482, 547
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	198, 482, 547
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	2 cut(s)	79, 142
BspANI	GGCC	3 cut(s)	198, 482, 547
BspCNI	CTCAG	2 cut(s)	391, 493
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	235, 408
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	148, 236, 323, 556
BstC8I	GCNNGC	3 cut(s)	196, 480, 523
BstDEI	CTNAG	3 cut(s)	399, 456, 501
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	163, 522
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 488, 497
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	237, 484, 584
BstXI	CCANNNNNNTGG	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	198, 482, 547
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	163, 522
BtsIMutI	CAGTG	4 cut(s)	144, 396, 457, 561
Cac8I	GCNNGC	3 cut(s)	196, 480, 523
CfoI	GCGC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	3 cut(s)	66, 245, 487
DdeI	CTNAG	3 cut(s)	399, 456, 501
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	2 cut(s)	482, 547
EcoRI	GAATTC	2 cut(s)	432, 460
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	69, 248, 490
FaiI	YATR	9 cut(s)	15, 67, 97, 246, 264, 327, 443, 488, 494
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	65, 244, 486
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	226, 498, 598
FokI	GGATG	2 cut(s)	170, 529
Fsp4HI	GCNGC	3 cut(s)	226, 498, 598
FspAI	RTGCGCAY	1 cut(s)	243
FspBI	CTAG	2 cut(s)	222, 353
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	226, 498, 598
HaeIII	GGCC	3 cut(s)	198, 482, 547
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	69, 248, 490
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	29, 347
HinfI	GANTC	4 cut(s)	4, 47, 92, 562
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	6 cut(s)	71, 130, 343, 396, 569, 580
Hpy188III	TCNNGA	2 cut(s)	8, 211
Hpy8I	GTNNAC	6 cut(s)	71, 130, 343, 396, 569, 580
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	4 cut(s)	148, 236, 323, 556
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	329, 419, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 488, 497
HpyF3I	CTNAG	3 cut(s)	399, 456, 501
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	69, 248, 490
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	3 cut(s)	237, 484, 584
MaeI	CTAG	2 cut(s)	222, 353
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	1 cut(s)	594
MfeI	CAATTG	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	6 cut(s)	120, 180, 315, 426, 432, 460
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	337, 575
MnlI	CCTC	1 cut(s)	558
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	5 cut(s)	27, 135, 297, 507, 607
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	114, 488, 497
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	69, 248, 490
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	243
PceI	AGGCCT	2 cut(s)	482, 547
PfeI	GAWTC	4 cut(s)	4, 47, 92, 562
PkrI	GCNGC	3 cut(s)	227, 499, 599
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	5 cut(s)	27, 135, 297, 507, 607
SatI	GCNGC	3 cut(s)	226, 498, 598
Sau3AI	GATC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	544
SetI	ASST	8 cut(s)	24, 33, 110, 196, 208, 230, 287, 351
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	120, 180, 315, 426, 432, 460
SseBI	AGGCCT	2 cut(s)	482, 547
SsiI	CCGC	2 cut(s)	79, 142
SspMI	CTAG	2 cut(s)	222, 353
StuI	AGGCCT	2 cut(s)	482, 547
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	148, 236, 323, 556
TaiI	ACGT	1 cut(s)	208
TasI	AATT	6 cut(s)	120, 180, 315, 426, 432, 460
TfiI	GAWTC	4 cut(s)	4, 47, 92, 562
Tru1I	TTAA	5 cut(s)	27, 135, 297, 507, 607
Tru9I	TTAA	5 cut(s)	27, 135, 297, 507, 607
TscAI	CASTG	4 cut(s)	151, 403, 457, 561
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	225, 497, 597
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	17, 84, 438, 475, 548
TspRI	CASTG	4 cut(s)	151, 403, 457, 561
XapI	RAATTY	3 cut(s)	180, 432, 460
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	2 cut(s)	222, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.