Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Reverse (-)

23296775 .. 23298209

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCCAGCTGTCTTCTCTGCTTGTCATAGAGTACTCAAGGAGGTTCGTACAAGGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGAGTTCGGCTTTCTATCCTATTGTGATGGTTCATGCATATTCGAGGAGTAACTGGCTAAAGCAGATTCTTCACTGTTTTTATGTTCTAATCTTAGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAATTCAGAGAGAGAACATGACCTTGTAATTGCTGTAAGTTGTGTTTATCTAGAACATCTCTCAATTACAAACTTAATTTTTCTCTTGGCATTTTTGGTCCTAATAATATATGTTGTTTGTTACTATGGGTTGAAGTCCTATGTGCTTGGAGAGATACCATCGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTAGGGATCTTACGCGGGAAGTCTTGGTATACCTCCAAACCTATATTTTGGATGGAGAAAAGGTTCTCTTGATGCAGTGCTCTCACGATGGGGCATGTCCTTTGGAGAGAGCAGGTAAATATTGTCATTTTGTTCAATGTTTGGAGAGAACTTCTACACAGCTTGCATACAAGGTTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

218

Amino Acids

24.71

Weight (kDa)

8.74

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	487
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	456, 486
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	3 cut(s)	33, 49, 465
AfiI	CCNNNNNNNGG	2 cut(s)	425, 475
AgsI	TTSAA	2 cut(s)	394, 608
AjnI	CCWGG	1 cut(s)	58
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	2 cut(s)	8, 634
AluI	AGCT	2 cut(s)	8, 634
Alw21I	GWGCWC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	456, 486
ApeKI	GCWGC	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	5 cut(s)	121, 427, 445, 518, 554
BciT130I	CCWGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	264, 534
BpiI	GAAGAC	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 475
Bse1I	ACTGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	2 cut(s)	425, 475
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	425, 475
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	448, 478
BspACI	CCGC	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	2 cut(s)	456, 486
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	448, 478
BssNAI	GTATAC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	176, 224, 460
BstC8I	GCNNGC	3 cut(s)	6, 97, 636
BstDEI	CTNAG	2 cut(s)	193, 473
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	487
BstKTI	GATC	2 cut(s)	451, 481
BstMBI	GATC	2 cut(s)	448, 478
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BstZ17I	GTATAC	1 cut(s)	502
BtgZI	GCGATG	2 cut(s)	405, 423
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	172, 554
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	6, 97, 636
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	32, 48, 464
CviAII	CATG	3 cut(s)	134, 278, 567
CviJI	RGCY	5 cut(s)	8, 55, 110, 157, 634
CviKI_1	RGCY	5 cut(s)	8, 55, 110, 157, 634
CviQI	GTAC	3 cut(s)	32, 48, 464
DdeI	CTNAG	2 cut(s)	193, 473
DpnI	GATC	2 cut(s)	450, 480
DpnII	GATC	2 cut(s)	448, 478
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	3 cut(s)	137, 281, 570
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	3 cut(s)	133, 277, 566
FauI	CCCGC	1 cut(s)	480
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	137, 281, 570
HinfI	GANTC	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	201, 268
Hpy188III	TCNNGA	3 cut(s)	311, 541, 557
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	3 cut(s)	176, 224, 460
HpyCH4V	TGCA	3 cut(s)	137, 547, 638
HpyF3I	CTNAG	2 cut(s)	193, 473
Hsp92II	CATG	3 cut(s)	137, 281, 570
Kzo9I	GATC	2 cut(s)	448, 478
LpnPI	CCDG	7 cut(s)	18, 45, 72, 81, 84, 139, 570
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	264, 534
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	149, 380
MalI	GATC	2 cut(s)	450, 480
MboI	GATC	2 cut(s)	448, 478
MboII	GAAGA	3 cut(s)	4, 161, 214
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	5 cut(s)	262, 288, 324, 336, 453
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	34, 138, 245, 515
Mph1103I	ATGCAT	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	3 cut(s)	209, 335, 655
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	487
NdeII	GATC	2 cut(s)	448, 478
NlaIII	CATG	3 cut(s)	137, 281, 570
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	3 cut(s)	33, 49, 465
RsaNI	GTAC	3 cut(s)	32, 48, 464
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	209, 335, 655
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	448, 478
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	554
SfaNI	GCATC	2 cut(s)	264, 534
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	262, 288, 324, 336, 453
SsiI	CCGC	1 cut(s)	487
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	176, 224, 460
TaqI	TCGA	2 cut(s)	143, 451
TasI	AATT	5 cut(s)	262, 288, 324, 336, 453
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	209, 335, 655
Tru9I	TTAA	3 cut(s)	209, 335, 655
TscAI	CASTG	2 cut(s)	179, 554
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	179, 554
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	358
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.