Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Forward (+)

32919225 .. 32923259

Gene Structure 4035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGGAGTCACTTTTGATGAGCGAAGCTCATTACAAACACAACTTAAGCTTAACTGACAAACTGAAGAGGAAGGTGCTGAGGCTATCAGAATCCTTCACCCAAATCAAGGATGTCAACTCTCAGCTTATTGCTTCCACTTCGAAACAGCTCGTTAAGGACCCTTTGCAGTATGTGGACCAGTCACAGAGGTGGAAGATCAAGAGCTCTTTTGGAGATATTGGCCTTACTTATAGAGACGACGAGACCATTGCTTATGTTGCTTCCAGAATGCCAGCTGTCTTCTCTGCTTGTCACAGAGTACTCAAGGAGGTTCGTACAATGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGGGTTCGGCTTTCTGGGCACTACGAGAAGTCGGGCCGAATTCCTTGGAGAATGTTAACTTAGTAGAGCCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTCAGAAGAACTTAACACTTATTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAAATCAGAGAGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTTGGGATCTTACGTGGGAAGTCCTGTGCTCTCACGATGGGGCATGTCCTTTGGAGAAAGCAGTTAGTATTGGCATTAGAGGCAGACATCAAATTGTTGGACATATCCAATTGCTAGATACTTGTACAAGGGGAACCTCATGGGACCAGAGTCTGCAGGAGGTTAATATAATAATTCCAGTGCCTGCTGGAACTAAGTCAAGGGATATTGTTTATGAGGCAAAGAAGAACAGTGTGAAGTTTGGACTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

296

Amino Acids

33.11

Weight (kDa)

8.94

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	82 - 215	2.2e-21	Mitochondrial small ribosomal subunit Rsm22
Methyltransf_23	PF13489	101 - 204	1.2e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	621, 651
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	86, 629
AfaI	GTAC	4 cut(s)	303, 319, 630, 763
AfiI	CCNNNNNNNGG	2 cut(s)	109, 640
AflII	CTTAAG	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	328
AleI	CACNNNNGTG	1 cut(s)	190
AluBI	AGCT	6 cut(s)	29, 51, 127, 151, 207, 278
AluI	AGCT	6 cut(s)	29, 51, 127, 151, 207, 278
Alw21I	GWGCWC	2 cut(s)	209, 668
Alw26I	GTCTC	2 cut(s)	231, 239
AlwI	GGATC	2 cut(s)	621, 651
AlwNI	CAGNNNCTG	2 cut(s)	790, 821
AoxI	GGCC	3 cut(s)	223, 404, 463
ApeKI	GCWGC	2 cut(s)	325, 454
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	4 cut(s)	160, 178, 404, 781
AsuHPI	GGTGA	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	160, 178, 781
BaeGI	GKGCMC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	2 cut(s)	209, 668
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	312, 466
BccI	CCATC	3 cut(s)	448, 610, 668
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	231, 239
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	2 cut(s)	624, 791
BfrI	CTTAAG	1 cut(s)	46
BisI	GCNGC	2 cut(s)	326, 455
BlsI	GCNGC	2 cut(s)	327, 456
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	3 cut(s)	160, 178, 781
BmgT120I	GGNCC	4 cut(s)	160, 178, 404, 781
BmiI	GGNNCC	3 cut(s)	162, 772, 782
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 640
Bse1I	ACTGG	3 cut(s)	181, 815, 888
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	109, 640
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	71, 137
BseNI	ACTGG	3 cut(s)	181, 815, 888
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	312, 466
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	225, 406, 465
BsiHKAI	GWGCWC	2 cut(s)	209, 668
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	109, 640
BsmAI	GTCTC	2 cut(s)	231, 239
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	225, 406, 465
Bso31I	GGTCTC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	209, 391, 668
Bsp1407I	TGTACA	1 cut(s)	761
Bsp143I	GATC	3 cut(s)	198, 613, 643
BspANI	GGCC	3 cut(s)	225, 406, 465
BspCNI	CTCAG	2 cut(s)	72, 136
BspLI	GGNNCC	3 cut(s)	162, 772, 782
BspMAI	CTGCAG	1 cut(s)	795
BspPI	GGATC	2 cut(s)	621, 651
BspT104I	TTCGAA	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	181, 815, 888
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	198, 613, 643
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	509, 625, 869
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	5 cut(s)	276, 367, 459, 463, 822
BstDEI	CTNAG	4 cut(s)	80, 123, 430, 831
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	201, 616, 646
BstMAI	GTCTC	2 cut(s)	231, 239
BstMBI	GATC	3 cut(s)	198, 613, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 386, 717
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	684
BstPAI	GACNNNNGTC	1 cut(s)	786
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	624, 791
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	312, 466
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	225, 406, 465
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	822, 874
Cac8I	GCNNGC	5 cut(s)	276, 367, 459, 463, 822
CaiI	CAGNNNCTG	2 cut(s)	790, 821
Cfr13I	GGNCC	4 cut(s)	160, 178, 404, 781
Csp6I	GTAC	4 cut(s)	302, 318, 629, 762
CviAII	CATG	3 cut(s)	563, 681, 777
CviQI	GTAC	4 cut(s)	302, 318, 629, 762
DdeI	CTNAG	4 cut(s)	80, 123, 430, 831
DpnI	GATC	3 cut(s)	200, 615, 645
DpnII	GATC	3 cut(s)	198, 613, 643
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	3 cut(s)	160, 178, 781
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	86, 629
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	3 cut(s)	566, 684, 780
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	3 cut(s)	562, 680, 776
Fnu4HI	GCNGC	2 cut(s)	326, 455
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	326, 455
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	2 cut(s)	326, 455
HaeIII	GGCC	3 cut(s)	225, 406, 465
Hin1II	CATG	3 cut(s)	566, 684, 780
HincII	GTYRAC	2 cut(s)	118, 427
HindII	GTYRAC	2 cut(s)	118, 427
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	8, 92, 787
HpaI	GTTAAC	1 cut(s)	427
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	118, 178, 427
Hpy188I	TCNGA	3 cut(s)	91, 486, 553
Hpy188III	TCNNGA	3 cut(s)	202, 267, 671
Hpy8I	GTNNAC	3 cut(s)	118, 178, 427
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	67, 106, 604
HpyCH4III	ACNGT	3 cut(s)	509, 625, 869
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	4 cut(s)	169, 454, 461, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 386, 717
HpyF3I	CTNAG	4 cut(s)	80, 123, 430, 831
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	3 cut(s)	566, 684, 780
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	198, 613, 643
Lsp1109I	GCAGC	2 cut(s)	312, 466
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	3 cut(s)	9, 183, 293
MalI	GATC	3 cut(s)	200, 615, 645
MboI	GATC	3 cut(s)	198, 613, 643
MboII	GAAGA	5 cut(s)	79, 208, 274, 499, 874
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	209, 391, 668
MluCI	AATT	6 cut(s)	409, 573, 618, 729, 746, 810
MlyI	GAGTC	2 cut(s)	17, 796
MmeI	TCCRAC	2 cut(s)	333, 715
MnlI	CCTC	9 cut(s)	63, 75, 183, 304, 530, 710, 784, 790, 847
MseI	TTAA	6 cut(s)	47, 53, 156, 426, 494, 801
MslI	CAYNNNNRTG	2 cut(s)	190, 510
MspA1I	CMGCKG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	260, 386, 717
NdeII	GATC	3 cut(s)	198, 613, 643
NlaIII	CATG	3 cut(s)	566, 684, 780
NlaIV	GGNNCC	3 cut(s)	162, 772, 782
NmuCI	GTSAC	3 cut(s)	9, 183, 293
NspI	RCATGY	1 cut(s)	684
NspV	TTCGAA	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	190
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	327, 456
PleI	GAGTC	2 cut(s)	16, 795
PpsI	GAGTC	2 cut(s)	16, 795
Ppu21I	YACGTR	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	162, 772, 782
PspPI	GGNCC	4 cut(s)	160, 178, 404, 781
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	2 cut(s)	790, 821
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	4 cut(s)	303, 319, 630, 763
RsaNI	GTAC	4 cut(s)	302, 318, 629, 762
RseI	CAYNNNNRTG	2 cut(s)	190, 510
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	47, 53, 156, 426, 494, 801
SatI	GCNGC	2 cut(s)	326, 455
Sau3AI	GATC	3 cut(s)	198, 613, 643
Sau96I	GGNCC	4 cut(s)	160, 178, 404, 781
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	2 cut(s)	17, 796
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	3 cut(s)	209, 391, 668
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	2 cut(s)	624, 791
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	3 cut(s)	160, 178, 781
SmiMI	CAYNNNNRTG	2 cut(s)	190, 510
SmlI	CTYRAG	2 cut(s)	46, 305
SmoI	CTYRAG	2 cut(s)	46, 305
Sse9I	AATT	6 cut(s)	409, 573, 618, 729, 746, 810
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	509, 625, 869
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	2 cut(s)	143, 616
TasI	AATT	6 cut(s)	409, 573, 618, 729, 746, 810
TatI	WGTACW	2 cut(s)	301, 761
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	6 cut(s)	47, 53, 156, 426, 494, 801
Tru9I	TTAA	6 cut(s)	47, 53, 156, 426, 494, 801
TscAI	CASTG	2 cut(s)	822, 874
TseFI	GTSAC	3 cut(s)	9, 183, 293
TseI	GCWGC	2 cut(s)	325, 454
Tsp45I	GTSAC	3 cut(s)	9, 183, 293
TspRI	CASTG	2 cut(s)	822, 874
Vha464I	CTTAAG	1 cut(s)	46
VpaK11BI	GGWCC	3 cut(s)	160, 178, 781
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	684
XspI	CTAG	1 cut(s)	752
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.