AT1G19025

DNA repair metallo-beta-lactamase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015940
Physical Location & Seq
Forward (+)
6568674 .. 6570939
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19025.3

Sequence Viewer

Length: 1650 bp
ATGTCGATAGAGATGCCAAGAGGTTTACCATTTGCCGTCGACACTTTTGGACCATACACGGAGACGAAGAGAAGAAAGAGACATCATTTCTTAACTCATGCTCATAAAGATCACACCGTTGGGGTTTCTCCTTCTAACATTGTCGTCTTCCCCATTTACTCTACTTCCCTCACCATCTCTCTTCTTCTTCAACGTTTCCCTCAGCTTGATGAGTCTTACTTCGTGAGAGTTGAAATTGGTCAATCAGTGATTGTTGATGATCCTGATGGCGAGTTTAAAGTTACTGCTTTTGATGCTAATCATTGTCCTGGAGCCGTTATGTTCTTGTTTGAAGGAAGTTTTGGTAACATACTTCACACTGGTGATTGTAGGCTTACACTAGATTGTCTACATAGTCTACCTGAGAAATATGTTGGAAGAAGCCATGGCATGAAACCAAAATGCTCTCTTGGTTACATTTTCTTAGATTGTACATTTGGGAAATCATCTCACTCTCAGAGGTTTCCCACTAAGCATTCAGCTATTAGACAGATCATCAATTGCATATGGAACCACCCAGATGCACCAGTTGTATATCTTGCTTGTGATATGTTGGGACAAGAGGATGTTCTCTTAGAAGTTTCTAGAACGTTTGGCTCCAAGATTTATGTGGACAAAGCTACAAACTTGGAATGTTTCAGATCGTTAATGGTTATAGTTCCCGAAATTGTCTCTGAAGATCCTTCTTCCAGGTTTCACATATTCAGTGGGTTCCCTAAACTGTATGAAAGAACAAGTGCAAAGCTTGCTGAGGCAAGATCGAAACTTCAGAGTGAGCCTCTTATCATCCGTCCTTCAGCTCAGTGGTATGTTTGTGATGATGAAGATGATTGGAAAAGTGGAAGCATTCAAAAGCAGAGAAAAGTTAGGTTTAGTGAAGCTGTCAAGGATGAGTTTGGCCTTTGGCATGTGTGTTACTCAATGCATTCATCCCGTGCAGAGTTGGAATCAGCGATGCAACTTCTTTCTCCGAAATGGGTTGTATCAACAGTTCCTTCTTGTAGAGCAATGGAACTCAACTATGTGAAGAAAAACTGTTTTATCAGTCGGTTTTCGCCTGATGATCCTTTCTGGAAGCTTCTAGACATCGATATGGAAGCTTCTCCAGTTGCAGCAGCTGATACTCAAACTGTAGCTCTTAGTTGCTGTCTCATGAGTGAACAGATTATTCTGGATTCGGGAAAATCGAAGTTAGAACCTGTGATAGAATCGTCTAGCACGAAGAAGAAGCTTCTGAGTTTATCCCCTGAAAATAGTCTTCCTGTAACTCTGTTTGGGAGAGCAAGGCAAAGTTCTCAGGAATGTGATCAACTACATGAGAGAAAAGTCATACACACTCAATGTGTATACACCAAAACCTCGCCGGTATTGGAAAAACTGAATGTAAAGGTAGTAATTGAGCCTTTACAAGATGATACTAAAGAAGAAACAGTAGAGAAGGAATCTTGTACAATCTTTTCTACTTCTACCTCAAAGGAGACTTGCAAGGATCTTAGTGGGGATTTGAGAAAGCTATACAGATCAATGAACGCACCTGTGCCTCGGCCGCTACCATCATTGATGGAGCTTATGAACGCTAGGAAACGCTCTCGGAATCACTTGAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

549

Amino Acids

62.14

Weight (kDa)

7.24

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DRMBL PF07522 91 - 204 4.8e-24 DNA repair metallo-beta-lactamase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19025 AT1G19025 AT1G19025
fragaria_vesca FvH4_1g24320
pyrus_communis pycom01g02340
rosa_chinensis RchiOBHm_Chr2g0120831
rosa_laevigata RLG00000018593
rosa_multiflora Rmu_sc0000621.1_g000008
rosa_roxburghii Rroxscaffold_2G00122800
rosa_rugosa Rorug02G0231900
rosa_samantha Rh2AG288500 Rh2BG299500 Rh2CG277500 Rh2DG313600
rosa_wichuraiana Rw2G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 39, 388, 397, 1386
AciI CCGC 1 cut(s) 1586
AclI AACGTT 2 cut(s) 193, 629
AclWI GGATC 4 cut(s) 254, 713, 1097, 1536
AcoI YGGCCR 1 cut(s) 1583
AcuI CTGAAG 3 cut(s) 735, 791, 819
AfaI GTAC 2 cut(s) 472, 1489
AgsI TTSAA 4 cut(s) 191, 233, 332, 890
AjnI CCWGG 2 cut(s) 307, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AleI CACNNNNGTG 1 cut(s) 360
Alw26I GTCTC 5 cut(s) 56, 73, 715, 1193, 1511
AlwI GGATC 4 cut(s) 254, 713, 1097, 1536
AlwNI CAGNNNCTG 1 cut(s) 1157
AoxI GGCC 2 cut(s) 937, 1583
ApeKI GCWGC 2 cut(s) 1151, 1154
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 163, 374
AvaII GGWCC 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 139, 1289
BbvCI CCTCAGC 2 cut(s) 201, 789
BbvI GCAGC 2 cut(s) 1163, 1166
BccI CCATC 4 cut(s) 182, 260, 1594, 1600
BceAI ACGGC 2 cut(s) 20, 299
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 309, 730
BclI TGATCA 1 cut(s) 1345
BcoDI GTCTC 5 cut(s) 56, 73, 715, 1193, 1511
BfaI CTAG 6 cut(s) 380, 624, 1121, 1254, 1617, 1648
BfmI CTRYAG 1 cut(s) 1170
BisI GCNGC 3 cut(s) 1152, 1155, 1586
BlsI GCNGC 3 cut(s) 1153, 1156, 1587
Bme1390I CCNGG 2 cut(s) 309, 730
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 4 cut(s) 313, 551, 637, 752
BmrFI CCNGG 2 cut(s) 309, 730
BmsI GCATC 4 cut(s) 3, 283, 550, 984
BpiI GAAGAC 2 cut(s) 139, 1289
BplI GAGNNNNNCTC 2 cut(s) 802, 834
BpmI CTGGAG 2 cut(s) 330, 1128
Bpu10I CCTNAGC 2 cut(s) 201, 789
Bsa29I ATCGAT 1 cut(s) 1128
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 424, 1580
Bse118I RCCGGY 1 cut(s) 1402
Bse1I ACTGG 3 cut(s) 364, 566, 1145
Bse3DI GCAATG 1 cut(s) 1053
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 309, 730
BseCI ATCGAT 1 cut(s) 1128
BseDI CCNNGG 2 cut(s) 424, 1580
BseGI GGATG 4 cut(s) 610, 825, 934, 968
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 7 cut(s) 215, 393, 509, 780, 854, 1265, 1349
BseNI ACTGG 3 cut(s) 364, 566, 1145
BseX3I CGGCCG 1 cut(s) 1583
BseXI GCAGC 2 cut(s) 1163, 1166
BsgI GTGCAG 1 cut(s) 996
Bsh1285I CGRYCG 1 cut(s) 1586
BshFI GGCC 2 cut(s) 939, 1585
BshVI ATCGAT 1 cut(s) 1128
BsiEI CGRYCG 1 cut(s) 1586
BsiSI CCGG 1 cut(s) 1403
BslFI GGGAC 1 cut(s) 609
BsmAI GTCTC 5 cut(s) 56, 73, 715, 1193, 1511
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 609
BsmI GAATGC 3 cut(s) 514, 885, 964
BsnI GGCC 2 cut(s) 939, 1585
Bsp1407I TGTACA 2 cut(s) 470, 1487
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 1 cut(s) 1586
BspANI GGCC 2 cut(s) 939, 1585
BspCNI CTCAG 7 cut(s) 214, 394, 508, 781, 853, 1266, 1348
BspDI ATCGAT 1 cut(s) 1128
BspHI TCATGA 1 cut(s) 1191
BspLI GGNNCC 4 cut(s) 313, 551, 637, 752
BspPI GGATC 4 cut(s) 254, 713, 1097, 1536
BsrDI GCAATG 1 cut(s) 1053
BsrFI RCCGGY 1 cut(s) 1402
BsrGI TGTACA 2 cut(s) 470, 1487
BsrI ACTGG 3 cut(s) 364, 566, 1145
BssAI RCCGGY 1 cut(s) 1402
BssECI CCNNGG 2 cut(s) 424, 1580
BssNAI GTATAC 1 cut(s) 1387
BssT1I CCWWGG 1 cut(s) 424
Bst1107I GTATAC 1 cut(s) 1387
Bst2UI CCWGG 2 cut(s) 309, 730
Bst4CI ACNGT 6 cut(s) 118, 762, 1030, 1076, 1171, 1471
Bst6I CTCTTC 2 cut(s) 62, 186
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 2 cut(s) 470, 1487
BstC8I GCNNGC 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 4 cut(s) 610, 825, 934, 968
BstMAI GTCTC 5 cut(s) 56, 73, 715, 1193, 1511
BstMCI CGRYCG 1 cut(s) 1586
BstMWI GCNNNNNNNGC 3 cut(s) 293, 785, 1585
BstNI CCWGG 2 cut(s) 309, 730
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 2 cut(s) 307, 728
BstSFI CTRYAG 1 cut(s) 1170
BstV1I GCAGC 2 cut(s) 1163, 1166
BstV2I GAAGAC 2 cut(s) 139, 1289
BstX2I RGATCY 2 cut(s) 718, 1528
BstYI RGATCY 2 cut(s) 718, 1528
BstZ17I GTATAC 1 cut(s) 1387
BstZI CGGCCG 1 cut(s) 1583
Bsu15I ATCGAT 1 cut(s) 1128
BsuRI GGCC 2 cut(s) 939, 1585
BsuTUI ATCGAT 1 cut(s) 1128
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 1007
BtsCI GGATG 4 cut(s) 610, 825, 934, 968
BtsIMutI CAGTG 4 cut(s) 252, 357, 751, 848
Cac8I GCNNGC 1 cut(s) 786
CaiI CAGNNNCTG 1 cut(s) 1157
CciI TCATGA 1 cut(s) 1191
Cfr10I RCCGGY 1 cut(s) 1402
Cfr13I GGNCC 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 1128
Csp6I GTAC 2 cut(s) 471, 1488
CviAII CATG 6 cut(s) 98, 425, 430, 947, 1192, 1355
CviQI GTAC 2 cut(s) 471, 1488
DraI TTTAAA 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 1583
EagI CGGCCG 1 cut(s) 1583
Eam1104I CTCTTC 2 cut(s) 62, 186
EarI CTCTTC 2 cut(s) 62, 186
EclXI CGGCCG 1 cut(s) 1583
Eco130I CCWWGG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 50
Eco52I CGGCCG 1 cut(s) 1583
Eco57I CTGAAG 3 cut(s) 735, 791, 819
EcoRII CCWGG 2 cut(s) 307, 728
EcoT14I CCWWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 6 cut(s) 101, 428, 433, 950, 1195, 1358
FaqI GGGAC 1 cut(s) 609
FatI CATG 6 cut(s) 97, 424, 429, 946, 1191, 1354
FauNDI CATATG 1 cut(s) 545
FbaI TGATCA 1 cut(s) 1345
FblI GTMKAC 4 cut(s) 39, 388, 397, 1386
Fnu4HI GCNGC 3 cut(s) 1152, 1155, 1586
FokI GGATG 4 cut(s) 617, 812, 941, 955
Fsp4HI GCNGC 3 cut(s) 1152, 1155, 1586
FspBI CTAG 6 cut(s) 380, 624, 1121, 1254, 1617, 1648
GluI GCNGC 3 cut(s) 1152, 1155, 1586
GsuI CTGGAG 2 cut(s) 330, 1128
HaeIII GGCC 2 cut(s) 939, 1585
HapII CCGG 1 cut(s) 1403
Hin1II CATG 6 cut(s) 101, 428, 433, 950, 1195, 1358
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 4 cut(s) 782, 1115, 1137, 1268
HinfI GANTC 6 cut(s) 212, 986, 1214, 1247, 1481, 1633
HpaII CCGG 1 cut(s) 1403
HphI GGTGA 2 cut(s) 163, 374
Hpy166II GTNNAC 7 cut(s) 26, 40, 389, 398, 652, 1199, 1387
Hpy188I TCNGA 7 cut(s) 498, 680, 715, 810, 1011, 1275, 1632
Hpy8I GTNNAC 7 cut(s) 26, 40, 389, 398, 652, 1199, 1387
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 6 cut(s) 141, 326, 732, 843, 1044, 1471
HpyCH4III ACNGT 6 cut(s) 118, 762, 1030, 1076, 1171, 1471
HpyCH4IV ACGT 2 cut(s) 193, 629
HpyCH4V TGCA 8 cut(s) 543, 563, 779, 964, 977, 997, 1151, 1524
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 785, 1585
HpySE526I ACGT 2 cut(s) 193, 629
Hsp92II CATG 6 cut(s) 101, 428, 433, 950, 1195, 1358
Ksp22I TGATCA 1 cut(s) 1345
LmnI GCTCC 3 cut(s) 311, 641, 1603
Lsp1109I GCAGC 2 cut(s) 1163, 1166
LweI GCATC 4 cut(s) 3, 283, 550, 984
MaeI CTAG 6 cut(s) 380, 624, 1121, 1254, 1617, 1648
MaeII ACGT 2 cut(s) 193, 629
MaeIII GTNAC 5 cut(s) 280, 344, 452, 953, 1303
MfeI CAATTG 1 cut(s) 538
MflI RGATCY 2 cut(s) 718, 1528
MluCI AATT 4 cut(s) 234, 538, 705, 1434
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 394, 963
Mph1103I ATGCAT 1 cut(s) 966
MseI TTAA 3 cut(s) 92, 276, 686
MslI CAYNNNNRTG 3 cut(s) 360, 558, 1130
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 1 cut(s) 1403
MspR9I CCNGG 2 cut(s) 309, 730
MunI CAATTG 1 cut(s) 538
Mva1269I GAATGC 3 cut(s) 514, 885, 964
MvaI CCWGG 2 cut(s) 309, 730
MwoI GCNNNNNNNGC 3 cut(s) 293, 785, 1585
NcoI CCATGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 545
NlaIII CATG 6 cut(s) 101, 428, 433, 950, 1195, 1358
NlaIV GGNNCC 4 cut(s) 313, 551, 637, 752
NmeAIII GCCGAG 1 cut(s) 1561
NsiI ATGCAT 1 cut(s) 966
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 1 cut(s) 360
PagI TCATGA 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 2 cut(s) 1223, 1256
PctI GAATGC 3 cut(s) 514, 885, 964
PfeI GAWTC 5 cut(s) 986, 1214, 1247, 1481, 1633
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 3 cut(s) 1153, 1156, 1587
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp1406I AACGTT 2 cut(s) 193, 629
Psp6I CCWGG 2 cut(s) 307, 728
PspGI CCWGG 2 cut(s) 307, 728
PspN4I GGNNCC 4 cut(s) 313, 551, 637, 752
PspPI GGNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 1014, 1046
PstNI CAGNNNCTG 1 cut(s) 1157
PsuI RGATCY 2 cut(s) 718, 1528
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 2 cut(s) 472, 1489
RsaNI GTAC 2 cut(s) 471, 1488
RseI CAYNNNNRTG 3 cut(s) 360, 558, 1130
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 3 cut(s) 92, 276, 686
SatI GCNGC 3 cut(s) 1152, 1155, 1586
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 309, 730
SfaNI GCATC 4 cut(s) 3, 283, 550, 984
SfcI CTRYAG 1 cut(s) 1170
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 3 cut(s) 360, 558, 1130
SmlI CTYRAG 1 cut(s) 1639
SmoI CTYRAG 1 cut(s) 1639
Sse9I AATT 4 cut(s) 234, 538, 705, 1434
SsiI CCGC 1 cut(s) 1586
SspMI CTAG 6 cut(s) 380, 624, 1121, 1254, 1617, 1648
StyD4I CCNGG 2 cut(s) 307, 728
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 6 cut(s) 118, 762, 1030, 1076, 1171, 1471
TaiI ACGT 2 cut(s) 196, 632
TaqI TCGA 5 cut(s) 5, 39, 800, 1128, 1226
TasI AATT 4 cut(s) 234, 538, 705, 1434
TatI WGTACW 2 cut(s) 470, 1487
TauI GCSGC 1 cut(s) 1588
TfiI GAWTC 5 cut(s) 986, 1214, 1247, 1481, 1633
Tru1I TTAA 3 cut(s) 92, 276, 686
Tru9I TTAA 3 cut(s) 92, 276, 686
TscAI CASTG 4 cut(s) 252, 364, 751, 848
TseI GCWGC 2 cut(s) 1151, 1154
TspDTI ATGAA 6 cut(s) 446, 780, 876, 957, 1580, 1625
TspGWI ACGGA 2 cut(s) 74, 818
TspRI CASTG 4 cut(s) 252, 364, 751, 848
VpaK11BI GGWCC 1 cut(s) 50
XbaI TCTAGA 2 cut(s) 623, 1120
XceI RCATGY 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmiI GTMKAC 4 cut(s) 39, 388, 397, 1386
XspI CTAG 6 cut(s) 380, 624, 1121, 1254, 1617, 1648
Zsp2I ATGCAT 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.