Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015305

Physical Location & Seq

Genomic Coordinates Forward (+)

7128867 .. 7130799

Gene Structure 1933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCCTCAGGTCATATCGTGACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAACTGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGTAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAACATGCTCCAATGTTCAAGCGGTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTGGGTGTTGGCAGAGGTAGAGGTGCAATGCGAGGGAAACCGGCTGCCGGGCCCGGGCGTGGAACTGGAGGAAGGGGAGCGGTACCACCTGTGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048589 GO:0065003 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04139 ko05322 map03040 map04139 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

131

Amino Acids

14.24

Weight (kDa)

10.28

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	10 - 74	7e-19	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20580
fragaria_vesca	FvH4_2g37310
malus_domestica	MD08G1002200.v1.1 MD15G1001300.v1.1
prunus_persica	Prupe.1G353900_v2.0.a1
pyrus_communis	pycom15g00060
rosa_chinensis	RchiOBHm_Chr6g0304391
rosa_laevigata	RLG00000010984
rosa_multiflora	Rmu_ssc0000218.1_g000044
rosa_roxburghii	Rroxscaffold_7G00163780
rosa_rugosa	Rorug06G0331100
rosa_samantha	Rh6AG444000 Rh6BG458400 Rh6CG456800 Rh6DG443500
rosa_wichuraiana	Rw6G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	2 cut(s)	78, 374
AciI	CCGC	4 cut(s)	78, 153, 259, 374
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	4 cut(s)	13, 341, 348, 353
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	6 cut(s)	31, 70, 85, 133, 178, 288
AluI	AGCT	6 cut(s)	31, 70, 85, 133, 178, 288
Alw21I	GWGCWC	1 cut(s)	290
Ama87I	CYCGRG	2 cut(s)	134, 347
AoxI	GGCC	2 cut(s)	42, 344
ApaI	GGGCCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	338
AsiGI	ACCGGT	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	344, 345
AsuC2I	CCSGG	3 cut(s)	343, 348, 349
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	2 cut(s)	134, 347
AxyI	CCTNAGG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	290, 348
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	155
BcnI	CCSGG	3 cut(s)	343, 348, 349
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	79, 339
BlsI	GCNGC	2 cut(s)	80, 340
Bme1390I	CCNGG	3 cut(s)	343, 348, 349
BmeT110I	CYCGRG	2 cut(s)	134, 347
BmgT120I	GGNCC	2 cut(s)	344, 345
BmiI	GGNNCC	2 cut(s)	346, 378
BmrFI	CCNGG	3 cut(s)	343, 348, 349
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	3 cut(s)	343, 348, 349
BsaJI	CCNNGG	2 cut(s)	156, 347
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 341, 348, 353
Bse118I	RCCGGY	2 cut(s)	22, 334
Bse1I	ACTGG	3 cut(s)	125, 300, 364
Bse21I	CCTNAGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	156, 347
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	4 cut(s)	13, 341, 348, 353
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	125, 300, 364
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	44, 346
BshNI	GGYRCC	1 cut(s)	376
BshTI	ACCGGT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	134, 347
BsiSI	CCGG	4 cut(s)	23, 335, 342, 348
BslI	CCNNNNNNNGG	4 cut(s)	13, 341, 348, 353
BsnI	GGCC	2 cut(s)	44, 346
BsoBI	CYCGRG	2 cut(s)	134, 347
Bsp120I	GGGCCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	290, 348
BspACI	CCGC	4 cut(s)	78, 153, 259, 374
BspANI	GGCC	2 cut(s)	44, 346
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	346, 378
BspT107I	GGYRCC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	78, 374
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	2 cut(s)	22, 334
BsrI	ACTGG	3 cut(s)	125, 300, 364
BssAI	RCCGGY	2 cut(s)	22, 334
BssECI	CCNNGG	2 cut(s)	156, 347
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	64, 128
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	166
BstNSI	RCATGY	2 cut(s)	188, 245
BstSCI	CCNGG	3 cut(s)	341, 346, 347
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	44, 346
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	83
Cfr10I	RCCGGY	2 cut(s)	22, 334
Cfr13I	GGNCC	2 cut(s)	344, 345
Cfr9I	CCCGGG	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	377
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	185, 242
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	2 cut(s)	290, 348
Eco53kI	GAGCTC	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	46
Eco88I	CYCGRG	2 cut(s)	134, 347
EcoICRI	GAGCTC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	290, 348
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	188, 245
FaiI	YATR	7 cut(s)	54, 101, 150, 186, 218, 224, 243
FatI	CATG	2 cut(s)	184, 241
Fnu4HI	GCNGC	2 cut(s)	79, 339
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	2 cut(s)	290, 348
Fsp4HI	GCNGC	2 cut(s)	79, 339
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	79, 339
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	44, 346
HapII	CCGG	4 cut(s)	23, 335, 342, 348
Hin1II	CATG	2 cut(s)	188, 245
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	4 cut(s)	23, 335, 342, 348
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	38, 58
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	2 cut(s)	64, 128
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	188, 245
KpnI	GGTACC	1 cut(s)	380
LmnI	GCTCC	3 cut(s)	67, 250, 371
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	58
MbiI	CCGCTC	2 cut(s)	78, 374
MboII	GAAGA	2 cut(s)	26, 181
MhlI	GDGCHC	2 cut(s)	290, 348
MspI	CCGG	4 cut(s)	23, 335, 342, 348
MspR9I	CCNGG	3 cut(s)	343, 348, 349
NciI	CCSGG	3 cut(s)	343, 348, 349
NlaIII	CATG	2 cut(s)	188, 245
NlaIV	GGNNCC	2 cut(s)	346, 378
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	2 cut(s)	188, 245
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	80, 340
Psp124BI	GAGCTC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	346, 378
PspOMI	GGGCCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	344, 345
PspXI	VCTCGAGB	1 cut(s)	134
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	290
SatI	GCNGC	2 cut(s)	79, 339
Sau96I	GGNCC	2 cut(s)	344, 345
ScrFI	CCNGG	3 cut(s)	343, 348, 349
SduI	GDGCHC	2 cut(s)	290, 348
SfaNI	GCATC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	134, 179
SmoI	CTYRAG	2 cut(s)	134, 179
SrfI	GCCCGGGC	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	4 cut(s)	78, 153, 259, 374
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	341, 346, 347
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	64, 128
TaqI	TCGA	2 cut(s)	135, 196
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	181
TspMI	CCCGGG	1 cut(s)	347
TspRI	CASTG	1 cut(s)	300
XceI	RCATGY	2 cut(s)	188, 245
XhoI	CTCGAG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.