Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015305

Physical Location & Seq

Genomic Coordinates Reverse (-)

32895911 .. 32898328

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G353900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCAGAAGCTTGGGAATACCAGTGAAGCTTCTTCACGAAGCGTCAGGGCACGTGGTAACAGTGGAGCTGAAGAGCGGTGAGCTTTACAGAGGAAGCATGGTGGAGTGCGAGGATAACTGGAACTGTCAGCTCGAGAACATCACCTACACCGCCAAGGACGGAAAGGTTTCACAACTTGAGCATGTTTTTATTCGAGGGAGCAAAGTAAGGTTTATGGTCATACCGGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTGGATTCTAGAATCAAGGGTAAGGGTGCTTCGCTAGGAGTTGGCAGAGGTAGAGCTGTTGCAATGCGGGCTAAAGCTCAAGCTGCCGGCCGTGGAACAGCTGGTAGGGGTGTTGTACCACCTGTTCGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048589 GO:0065003 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04139 ko05322 map03040 map04139 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

132

Amino Acids

14.29

Weight (kDa)

10.43

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20580
fragaria_vesca	FvH4_2g37310
malus_domestica	MD08G1002200.v1.1 MD15G1001300.v1.1
prunus_persica	Prupe.1G353900_v2.0.a1
pyrus_communis	pycom15g00060
rosa_chinensis	RchiOBHm_Chr6g0304391
rosa_laevigata	RLG00000010984
rosa_multiflora	Rmu_ssc0000218.1_g000044
rosa_roxburghii	Rroxscaffold_7G00163780
rosa_rugosa	Rorug06G0331100
rosa_samantha	Rh6AG444000 Rh6BG458400 Rh6CG456800 Rh6DG443500
rosa_wichuraiana	Rw6G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	3 cut(s)	78, 153, 328
AcoI	YGGCCR	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	92, 257
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	9 cut(s)	12, 31, 70, 85, 133, 317, 338, 344, 362
AluI	AGCT	9 cut(s)	12, 31, 70, 85, 133, 317, 338, 344, 362
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	92, 136
AvaI	CYCGRG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	54
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbrPI	CACGTG	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	270, 296
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	200, 324
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	156, 352
BsaWI	WCCGGW	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	23, 125
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	156, 352
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	23, 125
BseSI	GKGCMC	1 cut(s)	54
BseX3I	CGGCCG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	227, 348
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	78, 153, 328
BspANI	GGCC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	23, 125
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	156, 352
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	64, 128
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	330, 349
BstDSI	CCRYGG	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 344
BstNSI	RCATGY	2 cut(s)	188, 235
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	30, 69
Cac8I	GCNNGC	2 cut(s)	330, 349
Cfr10I	RCCGGY	1 cut(s)	347
CseI	GACGC	2 cut(s)	33, 248
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	100, 185, 232
CviQI	GTAC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	349
EagI	CGGCCG	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	92, 257
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	103, 188, 235
FaiI	YATR	5 cut(s)	101, 186, 218, 224, 233
FatI	CATG	3 cut(s)	99, 184, 231
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	270, 296
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	227, 348
HgaI	GACGC	2 cut(s)	33, 248
Hin1II	CATG	3 cut(s)	103, 188, 235
HindIII	AAGCTT	2 cut(s)	10, 29
HinfI	GANTC	2 cut(s)	266, 273
HpaII	CCGG	2 cut(s)	227, 348
HphI	GGTGA	2 cut(s)	92, 136
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	4 cut(s)	38, 136, 263, 270
HpyCH4III	ACNGT	2 cut(s)	64, 128
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 344
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	103, 188, 235
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	67, 201, 250
LpnPI	CCDG	7 cut(s)	33, 36, 106, 240, 248, 348, 361
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	270, 296
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	58
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	26, 85, 250
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	86, 106, 191, 302, 384
MroNI	GCCGGC	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	227, 348
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	329, 344
NaeI	GCCGGC	1 cut(s)	349
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	3 cut(s)	103, 188, 235
NspI	RCATGY	2 cut(s)	188, 235
PaeR7I	CTCGAG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	266, 273
PkrI	GCNGC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	55
PspCI	CACGTG	1 cut(s)	55
PsrI	GAACNNNNNNTAC	3 cut(s)	131, 163, 369
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	3 cut(s)	134, 179, 339
SmoI	CTYRAG	3 cut(s)	134, 179, 339
SsiI	CCGC	3 cut(s)	78, 153, 328
SspMI	CTAG	2 cut(s)	270, 296
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	64, 128
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	135, 196
TfiI	GAWTC	2 cut(s)	266, 273
TscAI	CASTG	2 cut(s)	30, 69
TseI	GCWGC	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	30, 69
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	2 cut(s)	188, 235
XhoI	CTCGAG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	2 cut(s)	270, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.