Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011171

Physical Location & Seq

Genomic Coordinates Forward (+)

48415388 .. 48418609

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTAAATTTTGGTGGGAGTGTTGCGAATCATGTCTCTGGTGCGCCACAACATGATCTGAACCAAAAGATGATCATGGAAGCTGGAACTAGTGTGAACCAAACTGATGCGCTTGCATTACCTTGGATGGTTCAATCCCCAATGCCGGCTCAAAGTTGTGTTGACTATCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTATACTGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTACGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGTCTAGTTTTGACAATGTTTCTCAAGTTGATCAAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCGGCCATGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGCTCGTAGGATCCGAATTGCTGAAAGGGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCGCGAGGGATATGGTCACTACTTCTTACACCAGCAAATGCTGAGTGAACCTCTTGAAGAGATGATAGGAAAATTGCTGGAGACAAATCCAGCAGCAGCAGACCAGCTGTTAAAGGACAAGGGTCTTTCGATGGTGCCTCTGGGTTTAACCAAGAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048589 GO:0065003 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04139 ko05322 map03040 map04139 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

300

Amino Acids

32.98

Weight (kDa)

5.26

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31770
fragaria_vesca	FvH4_2g37300 FvH4_2g37300 FvH4_2g37300 FvH4_2g37300
malus_domestica	MD08G1001300.v1.1 MD15G1000600.v1.1
prunus_persica	Prupe.1G353300_v2.0.a1
pyrus_communis	pycom08g00070
rosa_chinensis	RchiOBHm_Chr6g0304401
rosa_laevigata	RLG00000010982
rosa_multiflora	Rmu_ssc0000218.1_g000046
rosa_roxburghii	Rroxscaffold_7G00163770
rosa_rugosa	Rorug06G0331100 Rorug06G0331200
rosa_samantha	Rh6AG444100 Rh6BG458300 Rh6CG456900 Rh6DG443600
rosa_wichuraiana	Rw6G038550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	871
AccII	CGCG	1 cut(s)	741
AciI	CCGC	1 cut(s)	739
AclWI	GGATC	5 cut(s)	389, 402, 556, 569, 693
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	3 cut(s)	49, 314, 629
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	176, 677, 794
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	1 cut(s)	881
AluBI	AGCT	5 cut(s)	125, 356, 536, 673, 844
AluI	AGCT	5 cut(s)	125, 356, 536, 673, 844
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	82, 313, 812
AlwI	GGATC	5 cut(s)	389, 402, 556, 569, 693
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	6 cut(s)	296, 339, 485, 670, 830, 833
ApoI	RAATTY	3 cut(s)	49, 314, 629
Asp700I	GAANNNNTTC	3 cut(s)	355, 600, 896
AspLEI	GCGC	2 cut(s)	88, 154
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	722
BamHI	GGATCC	2 cut(s)	394, 561
BanI	GGYRCC	1 cut(s)	871
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	6 cut(s)	283, 351, 472, 682, 842, 845
BccI	CCATC	2 cut(s)	163, 862
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	114, 466
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	3 cut(s)	82, 313, 812
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	4 cut(s)	132, 212, 260, 441
BfmI	CTRYAG	2 cut(s)	337, 612
BisI	GCNGC	6 cut(s)	297, 340, 486, 671, 831, 834
BlsI	GCNGC	6 cut(s)	298, 341, 487, 672, 832, 835
Bme1390I	CCNGG	2 cut(s)	492, 505
BmiI	GGNNCC	3 cut(s)	396, 563, 873
BmrFI	CCNGG	2 cut(s)	492, 505
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	139, 415
BmuI	ACTGGG	1 cut(s)	444
BoxI	GACNNNNGTC	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
BpmI	CTGGAG	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	164, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	4 cut(s)	439, 486, 594, 642
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	164, 398
BseGI	GGATG	2 cut(s)	174, 646
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	4 cut(s)	439, 486, 594, 642
BseXI	GCAGC	6 cut(s)	283, 351, 472, 682, 842, 845
BsgI	GTGCAG	2 cut(s)	471, 570
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	188, 505
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	82, 313, 812
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	771
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	3 cut(s)	396, 563, 873
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	5 cut(s)	389, 402, 556, 569, 693
BspT107I	GGYRCC	1 cut(s)	871
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	439, 486, 594, 642
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	164, 398
BssMI	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
BssT1I	CCWWGG	2 cut(s)	164, 398
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	156, 189
BstDEI	CTNAG	2 cut(s)	689, 779
BstF5I	GGATG	2 cut(s)	174, 646
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	2 cut(s)	88, 154
BstKTI	GATC	7 cut(s)	100, 117, 397, 469, 550, 564, 688
BstMAI	GTCTC	3 cut(s)	82, 313, 812
BstMBI	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	259, 296
BstPAI	GACNNNNGTC	1 cut(s)	858
BstSCI	CCNGG	2 cut(s)	490, 503
BstSFI	CTRYAG	2 cut(s)	337, 612
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	6 cut(s)	283, 351, 472, 682, 842, 845
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	394, 561, 685
BstYI	RGATCY	3 cut(s)	394, 561, 685
BsuRI	GGCC	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	174, 646
BtsIMutI	CAGTG	3 cut(s)	432, 479, 587
Cac8I	GCNNGC	2 cut(s)	156, 189
CfoI	GCGC	2 cut(s)	88, 154
Cfr10I	RCCGGY	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	8 cut(s)	74, 95, 118, 256, 293, 391, 417, 510
CviJI	RGCY	9 cut(s)	18, 125, 191, 356, 485, 508, 536, 673, 844
CviKI_1	RGCY	9 cut(s)	18, 125, 191, 356, 485, 508, 536, 673, 844
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	2 cut(s)	689, 779
DpnI	GATC	7 cut(s)	99, 116, 396, 468, 549, 563, 687
DpnII	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
DraI	TTTAAA	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	164, 398
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	164, 398
ErhI	CCWWGG	2 cut(s)	164, 398
FaeI	CATG	8 cut(s)	77, 98, 121, 259, 296, 394, 420, 513
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	8 cut(s)	73, 94, 117, 255, 292, 390, 416, 509
FbaI	TGATCA	2 cut(s)	114, 466
Fnu4HI	GCNGC	6 cut(s)	297, 340, 486, 671, 831, 834
FokI	GGATG	2 cut(s)	181, 653
Fsp4HI	GCNGC	6 cut(s)	297, 340, 486, 671, 831, 834
FspBI	CTAG	4 cut(s)	132, 212, 260, 441
GlaI	GCGC	2 cut(s)	87, 153
GluI	GCNGC	6 cut(s)	297, 340, 486, 671, 831, 834
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	188, 505
HhaI	GCGC	2 cut(s)	88, 154
Hin1II	CATG	8 cut(s)	77, 98, 121, 259, 296, 394, 420, 513
Hin6I	GCGC	2 cut(s)	86, 152
HinP1I	GCGC	2 cut(s)	86, 152
HincII	GTYRAC	2 cut(s)	205, 477
HindII	GTYRAC	2 cut(s)	205, 477
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	70, 306
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	188, 505
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	4 cut(s)	139, 205, 477, 785
Hpy188I	TCNGA	4 cut(s)	102, 313, 566, 902
Hpy188III	TCNNGA	2 cut(s)	626, 791
Hpy8I	GTNNAC	4 cut(s)	139, 205, 477, 785
HpyAV	CCTTC	1 cut(s)	510
HpyCH4V	TGCA	6 cut(s)	34, 158, 339, 488, 587, 670
HpyF3I	CTNAG	2 cut(s)	689, 779
Hsp92II	CATG	8 cut(s)	77, 98, 121, 259, 296, 394, 420, 513
HspAI	GCGC	2 cut(s)	86, 152
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	2 cut(s)	114, 466
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
Lsp1109I	GCAGC	6 cut(s)	283, 351, 472, 682, 842, 845
LweI	GCATC	2 cut(s)	139, 415
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	4 cut(s)	132, 212, 260, 441
MaeIII	GTNAC	3 cut(s)	541, 580, 752
MalI	GATC	7 cut(s)	99, 116, 396, 468, 549, 563, 687
MboI	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
MboII	GAAGA	3 cut(s)	263, 605, 806
MfeI	CAATTG	2 cut(s)	35, 372
MflI	RGATCY	3 cut(s)	394, 561, 685
MhlI	GDGCHC	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	6 cut(s)	258, 610, 701, 736, 798, 885
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	3 cut(s)	355, 600, 896
MseI	TTAA	4 cut(s)	47, 476, 848, 884
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	2 cut(s)	188, 505
MspR9I	CCNGG	2 cut(s)	492, 505
MunI	CAATTG	2 cut(s)	35, 372
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	741
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	8 cut(s)	77, 98, 121, 259, 296, 394, 420, 513
NlaIV	GGNNCC	3 cut(s)	396, 563, 873
NmuCI	GTSAC	1 cut(s)	752
NspI	RCATGY	2 cut(s)	259, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	3 cut(s)	355, 600, 896
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	6 cut(s)	298, 341, 487, 672, 832, 835
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	396, 563, 873
PstI	CTGCAG	1 cut(s)	341
PsuI	RGATCY	3 cut(s)	394, 561, 685
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SaqAI	TTAA	4 cut(s)	47, 476, 848, 884
SatI	GCNGC	6 cut(s)	297, 340, 486, 671, 831, 834
Sau3AI	GATC	7 cut(s)	97, 114, 394, 466, 547, 561, 685
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	492, 505
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	9 cut(s)	127, 166, 358, 493, 538, 675, 712, 790, 846
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	139, 415
SfcI	CTRYAG	2 cut(s)	337, 612
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
SpeI	ACTAGT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	4 cut(s)	132, 212, 260, 441
StyD4I	CCNGG	2 cut(s)	490, 503
StyI	CCWWGG	2 cut(s)	164, 398
TaqI	TCGA	1 cut(s)	866
TatI	WGTACW	1 cut(s)	634
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	4 cut(s)	47, 476, 848, 884
Tru9I	TTAA	4 cut(s)	47, 476, 848, 884
TscAI	CASTG	3 cut(s)	439, 486, 594
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	6 cut(s)	296, 339, 485, 670, 830, 833
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	213, 264, 405
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	439, 486, 594
XapI	RAATTY	3 cut(s)	49, 314, 629
XceI	RCATGY	2 cut(s)	259, 296
XmnI	GAANNNNTTC	3 cut(s)	355, 600, 896
XspI	CTAG	4 cut(s)	132, 212, 260, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.