Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011171

Physical Location & Seq

Genomic Coordinates Reverse (-)

48419582 .. 48423434

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAAGCAGTGTTTGGCCTCGTGCTGCTGGATATAGATCACAGAACGATGAACATAGAGCCCACAATTTTTCTAAGCATGAGACGTCGTGTGACAGCGTGGTGAAGAAGGGTCCAAAGGCTAGGATCGGGATTTGGGATCCGGGTCAGCTACTAAATCTGGCAAACTTGAGAGCCCGCTCGTCGTTTAGGCCTGATGGGGCCCGCAGTTTCGACGGCGACGACGACCGTCATCTGAGATCTTGGCGTCGCAAACTCCTCTCCTCCCTCACCGCCGTCAAACTCAAGCTCACCTGGACCTCCGCCTTCAGATTCGCCCTCCTCCTCTTCCTCCTCGCCGCCATTGCCACCGCCTGCATTTCCCTCCCAATCGAAAAGAGTTTGAAGGATTTCTTGTTATGGATTAAGCAGGATCTTGGACCTTGGGGTCCACTTGTTTTGGCTGTCGCATACATTCCTCTCACCGTGCTGGCAGTTCCGGCTTCTGTACTTACTCTTGGTGGAGGTTATCTTTTTGGTTTGCCCGTGGGATTCATTGCAGACTCTATCGGTGCAACATTAGGTGCAACAGCGGCATTCATTCTTGGAAGAACAATTGGAAGATCTTATGTTATTTCCAAACTAAAGCATTATCCAAAGTTTCAAGCTGTTGCTGTTGCCATTCAGAGATCTGGTTTCAAGATAGTTCTTCTGCTGCGGCTTGCTCCTTTGCTTCCATTTAACATGCTGAACTACCTACTCTCTGTGACTCCTGTTCACATAGGGGACTATATGCTGGCAACTTGGTTGGGAATGATGCCGATCACATTTGCACTGGTATATGTTGGTACAACTCTTAAGGATCTTTCAGATGTTACACATGGATGGAATGAAGTTTCAACAACTCGTTGGGTGTTTATAGTACTTGGTTTTGGAATATCCGTGATTCTTCTGATTTGCATTAGTAAAGTTGCAAAGGCTTCTTTGGAAAAAGCACTGGCTGACAATGCTGAAATAGAAGGGATATTCTCGTCTTCAACGCTGCCCATTGTAGCAGGTTCATCCCCGGATCTTCCAAAAACTCTCATCATACAGATAGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

361

Amino Acids

39.4

Weight (kDa)

9.66

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	159 - 277	2.1e-24	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31770
fragaria_vesca	FvH4_2g37300 FvH4_2g37300 FvH4_2g37300 FvH4_2g37300
malus_domestica	MD08G1001300.v1.1 MD15G1000600.v1.1
prunus_persica	Prupe.1G353300_v2.0.a1
pyrus_communis	pycom08g00070
rosa_chinensis	RchiOBHm_Chr6g0304401
rosa_laevigata	RLG00000010982
rosa_multiflora	Rmu_ssc0000218.1_g000046
rosa_roxburghii	Rroxscaffold_7G00163770
rosa_rugosa	Rorug06G0331100 Rorug06G0331200
rosa_samantha	Rh6AG444100 Rh6BG458300 Rh6CG456900 Rh6DG443600
rosa_wichuraiana	Rw6G038550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	426
AatII	GACGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	1025
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	8 cut(s)	178, 205, 273, 303, 339, 351, 572, 697
AclWI	GGATC	6 cut(s)	134, 134, 147, 420, 849, 1056
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	2 cut(s)	86, 247
AfaI	GTAC	3 cut(s)	489, 829, 903
AflII	CTTAAG	1 cut(s)	836
AgsI	TTSAA	5 cut(s)	385, 644, 679, 879, 1017
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	151, 289, 647
AluI	AGCT	3 cut(s)	151, 289, 647
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	6 cut(s)	134, 134, 147, 420, 849, 1056
AoxI	GGCC	3 cut(s)	17, 191, 201
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	26, 694, 1021
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	6 cut(s)	113, 201, 202, 297, 419, 428
AsuC2I	CCSGG	2 cut(s)	144, 1046
AsuHPI	GGTGA	4 cut(s)	115, 262, 283, 454
AvaII	GGWCC	4 cut(s)	113, 297, 419, 428
BaeGI	GKGCMC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	3 cut(s)	64, 178, 205
BauI	CACGAG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	1005
BbvI	GCAGC	3 cut(s)	13, 681, 1008
BccI	CCATC	2 cut(s)	191, 858
BceAI	ACGGC	2 cut(s)	232, 260
BciT130I	CCWGG	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	144, 1046
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	1025
BglII	AGATCT	3 cut(s)	239, 602, 668
BisI	GCNGC	6 cut(s)	27, 339, 573, 695, 698, 1022
BlsI	GCNGC	6 cut(s)	28, 340, 574, 696, 699, 1023
BmcAI	AGTACT	1 cut(s)	903
Bme1390I	CCNGG	3 cut(s)	144, 295, 1046
Bme18I	GGWCC	4 cut(s)	113, 297, 419, 428
BmgT120I	GGNCC	6 cut(s)	113, 201, 202, 297, 419, 428
BmiI	GGNNCC	5 cut(s)	114, 141, 202, 203, 429
BmrFI	CCNGG	3 cut(s)	144, 295, 1046
BmsI	GCATC	1 cut(s)	786
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	1005
BpuEI	CTTGAG	2 cut(s)	190, 269
BpuMI	CCSGG	2 cut(s)	144, 1046
BsaBI	GATNNNNATC	2 cut(s)	37, 800
BsaHI	GRCGYC	2 cut(s)	86, 247
BsaJI	CCNNGG	3 cut(s)	422, 525, 1044
Bse1I	ACTGG	2 cut(s)	819, 981
Bse3DI	GCAATG	2 cut(s)	342, 534
Bse8I	GATNNNNATC	2 cut(s)	37, 800
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	422, 525, 1044
BseGI	GGATG	2 cut(s)	869, 1040
BseJI	GATNNNNATC	2 cut(s)	37, 800
BseMI	GCAATG	2 cut(s)	342, 534
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	819, 981
BseRI	GAGGAG	5 cut(s)	248, 253, 311, 314, 323
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	13, 681, 1008
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	19, 193, 203
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	143, 479, 1046
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	19, 193, 203
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	64, 178, 205
BspACI	CCGC	8 cut(s)	178, 205, 273, 303, 339, 351, 572, 697
BspANI	GGCC	3 cut(s)	19, 193, 203
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	114, 141, 202, 203, 429
BspMI	ACCTGC	1 cut(s)	1025
BspPI	GGATC	6 cut(s)	134, 134, 147, 420, 849, 1056
BspTI	CTTAAG	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	2 cut(s)	342, 534
BsrI	ACTGG	2 cut(s)	819, 981
BssECI	CCNNGG	3 cut(s)	422, 525, 1044
BssNI	GRCGYC	2 cut(s)	86, 247
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	230, 466
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	86, 247
BstAFI	CTTAAG	1 cut(s)	836
BstC8I	GCNNGC	6 cut(s)	178, 205, 355, 471, 702, 777
BstDEI	CTNAG	2 cut(s)	75, 236
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	869, 1040
BstMAI	GTCTC	1 cut(s)	77
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 479, 572, 986
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	3 cut(s)	142, 293, 1044
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	13, 681, 1008
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	7 cut(s)	139, 239, 412, 602, 668, 841, 1048
BstYI	RGATCY	7 cut(s)	139, 239, 412, 602, 668, 841, 1048
BsuRI	GGCC	3 cut(s)	19, 193, 203
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	869, 1040
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 812, 974
BveI	ACCTGC	1 cut(s)	1025
Cac8I	GCNNGC	6 cut(s)	178, 205, 355, 471, 702, 777
Cfr13I	GGNCC	6 cut(s)	113, 201, 202, 297, 419, 428
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	488, 828, 902
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	3 cut(s)	80, 724, 860
CviQI	GTAC	3 cut(s)	488, 828, 902
DdeI	CTNAG	2 cut(s)	75, 236
DrdI	GACNNNNNNGTC	1 cut(s)	426
DseDI	GACNNNNNNGTC	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	64, 178, 205
Eco47I	GGWCC	4 cut(s)	113, 297, 419, 428
Eco57I	CTGAAG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	3 cut(s)	64, 178, 205
ErhI	CCWWGG	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	83, 727, 863
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	3 cut(s)	79, 723, 859
FauI	CCCGC	2 cut(s)	185, 212
Fnu4HI	GCNGC	6 cut(s)	27, 339, 573, 695, 698, 1022
FokI	GGATG	2 cut(s)	876, 1027
FriOI	GRGCYC	3 cut(s)	64, 178, 205
Fsp4HI	GCNGC	6 cut(s)	27, 339, 573, 695, 698, 1022
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	6 cut(s)	27, 339, 573, 695, 698, 1022
HaeIII	GGCC	3 cut(s)	19, 193, 203
HapII	CCGG	3 cut(s)	143, 479, 1046
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	2 cut(s)	86, 247
Hin1II	CATG	3 cut(s)	83, 727, 863
HinfI	GANTC	6 cut(s)	312, 531, 542, 748, 925, 1079
HpaII	CCGG	3 cut(s)	143, 479, 1046
HphI	GGTGA	4 cut(s)	115, 262, 283, 454
Hpy166II	GTNNAC	2 cut(s)	431, 757
Hpy188I	TCNGA	5 cut(s)	237, 311, 666, 850, 933
Hpy188III	TCNNGA	2 cut(s)	130, 679
Hpy8I	GTNNAC	2 cut(s)	431, 757
Hpy99I	CGWCG	6 cut(s)	91, 187, 218, 224, 227, 252
HpyAV	CCTTC	4 cut(s)	103, 316, 379, 992
HpyCH4III	ACNGT	2 cut(s)	230, 466
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	7 cut(s)	357, 539, 554, 566, 812, 939, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 479, 572, 986
HpyF3I	CTNAG	2 cut(s)	75, 236
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	2 cut(s)	86, 247
Hsp92II	CATG	3 cut(s)	83, 727, 863
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	3 cut(s)	13, 681, 1008
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	3 cut(s)	92, 745, 853
MbiI	CCGCTC	1 cut(s)	180
MboII	GAAGA	8 cut(s)	118, 319, 600, 612, 680, 920, 1005, 1043
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	7 cut(s)	139, 239, 412, 602, 668, 841, 1048
MhlI	GDGCHC	3 cut(s)	64, 178, 205
MluCI	AATT	2 cut(s)	67, 594
MlyI	GAGTC	3 cut(s)	536, 742, 1073
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	405, 720, 837
MslI	CAYNNNNRTG	1 cut(s)	862
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	3 cut(s)	143, 479, 1046
MspR9I	CCNGG	3 cut(s)	144, 295, 1046
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	4 cut(s)	344, 479, 572, 986
NciI	CCSGG	2 cut(s)	144, 1046
NlaIII	CATG	3 cut(s)	83, 727, 863
NlaIV	GGNNCC	5 cut(s)	114, 141, 202, 203, 429
NmuCI	GTSAC	2 cut(s)	92, 745
NspI	RCATGY	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 222
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	312, 531, 925
PkrI	GCNGC	6 cut(s)	28, 340, 574, 696, 699, 1023
PleI	GAGTC	3 cut(s)	536, 742, 1073
PpsI	GAGTC	3 cut(s)	536, 742, 1073
PshAI	GACNNNNGTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	5 cut(s)	114, 141, 202, 203, 429
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	6 cut(s)	113, 201, 202, 297, 419, 428
PsuI	RGATCY	7 cut(s)	139, 239, 412, 602, 668, 841, 1048
RsaI	GTAC	3 cut(s)	489, 829, 903
RsaNI	GTAC	3 cut(s)	488, 828, 902
RseI	CAYNNNNRTG	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	405, 720, 837
SatI	GCNGC	6 cut(s)	27, 339, 573, 695, 698, 1022
Sau96I	GGNCC	6 cut(s)	113, 201, 202, 297, 419, 428
ScaI	AGTACT	1 cut(s)	903
SchI	GAGTC	3 cut(s)	536, 742, 1073
ScrFI	CCNGG	3 cut(s)	144, 295, 1046
SduI	GDGCHC	3 cut(s)	64, 178, 205
SfaNI	GCATC	1 cut(s)	786
SinI	GGWCC	4 cut(s)	113, 297, 419, 428
SmiMI	CAYNNNNRTG	1 cut(s)	862
SmlI	CTYRAG	3 cut(s)	169, 284, 836
SmoI	CTYRAG	3 cut(s)	169, 284, 836
Sse9I	AATT	2 cut(s)	67, 594
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	8 cut(s)	178, 205, 273, 303, 339, 351, 572, 697
SspMI	CTAG	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	142, 293, 1044
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	230, 466
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	213, 372
TasI	AATT	2 cut(s)	67, 594
TatI	WGTACW	2 cut(s)	487, 901
TauI	GCSGC	3 cut(s)	341, 575, 700
TfiI	GAWTC	3 cut(s)	312, 531, 925
Tru1I	TTAA	3 cut(s)	405, 720, 837
Tru9I	TTAA	3 cut(s)	405, 720, 837
TscAI	CASTG	3 cut(s)	16, 819, 981
TseFI	GTSAC	2 cut(s)	92, 745
TseI	GCWGC	3 cut(s)	26, 694, 1021
Tsp45I	GTSAC	2 cut(s)	92, 745
TspDTI	ATGAA	5 cut(s)	66, 523, 568, 885, 1029
TspGWI	ACGGA	1 cut(s)	910
TspRI	CASTG	3 cut(s)	16, 819, 981
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	4 cut(s)	113, 297, 419, 428
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.