Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015305

Physical Location & Seq

Genomic Coordinates Reverse (-)

216185 .. 218271

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1002200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCAGAAGTTTGGGAATTCCGGTGAAGCTTCTTCACGAGGCGTCAGGGCACGTGGTGACGGTGGAGCTCAAGAGCGGTGAGCTTTACAGAGGAAGCATGGTCGAGTGCGAGGACAACTGGAACTGTCAGCTCGAGAACATCACCTACACCGCCAAGGACGGAAAAGTTTCACAGCTTGAGCACGTATTTATCCGAGGGAGCAAAGTAAGGTTTATGGTCATACCTGACATGCTAAAGAATGCTCCAATGTTCAAGCGCCTGGATGCTAGAATCAAGGGCAAGGGTGCTTCACTAGGAGTCAGCAGAGGTAGAGCTGTTTCAATGCGAGCTAAGGCTCAAGCTGCTGGCCGTGGGACAGCCGGTAGGGGTGTTGTACCACCTGTTCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048589 GO:0065003 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04139 ko05322 map03040 map04139 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

132

Amino Acids

14.32

Weight (kDa)

10.43

Isoelectric Point (pI)

23.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	10 - 74	3.5e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20580
fragaria_vesca	FvH4_2g37310
malus_domestica	MD08G1002200.v1.1 MD15G1001300.v1.1
prunus_persica	Prupe.1G353900_v2.0.a1
pyrus_communis	pycom15g00060
rosa_chinensis	RchiOBHm_Chr6g0304391
rosa_laevigata	RLG00000010984
rosa_multiflora	Rmu_ssc0000218.1_g000044
rosa_roxburghii	Rroxscaffold_7G00163780
rosa_rugosa	Rorug06G0331100
rosa_samantha	Rh6AG444000 Rh6BG458400 Rh6CG456800 Rh6DG443500
rosa_wichuraiana	Rw6G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	2 cut(s)	78, 153
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	256, 324
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	8 cut(s)	31, 70, 85, 133, 178, 317, 332, 344
AluI	AGCT	8 cut(s)	31, 70, 85, 133, 178, 317, 332, 344
Alw21I	GWGCWC	2 cut(s)	72, 186
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	261
AsuHPI	GGTGA	4 cut(s)	37, 70, 92, 136
AsuII	TTCGAA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	72, 186
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	2 cut(s)	270, 296
BfoI	RGCGCY	1 cut(s)	262
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	388
BpuEI	CTTGAG	3 cut(s)	56, 200, 324
BsaAI	YACGTR	2 cut(s)	55, 187
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	156, 196, 352
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	156, 196, 352
BseGI	GGATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	72, 186
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	23, 363
BslFI	GGGAC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	54, 72, 186
BspACI	CCGC	2 cut(s)	78, 153
BspANI	GGCC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	156, 196, 352
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	64, 128
BstACI	GRCGYC	1 cut(s)	44
BstBAI	YACGTR	2 cut(s)	55, 187
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	330, 349
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	330, 349
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	362
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	2 cut(s)	100, 232
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	333
DraIII	CACNNNGTG	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	103, 235
FaiI	YATR	4 cut(s)	101, 218, 224, 233
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	99, 231
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	270, 296
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	23, 363
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	103, 235
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	273, 300
HpaII	CCGG	2 cut(s)	23, 363
HphI	GGTGA	4 cut(s)	37, 70, 92, 136
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	3 cut(s)	38, 73, 136
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	2 cut(s)	64, 128
HpyCH4IV	ACGT	2 cut(s)	54, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	2 cut(s)	54, 186
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	103, 235
HspAI	GCGC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	67, 201, 250
LpnPI	CCDG	8 cut(s)	33, 36, 106, 240, 248, 275, 333, 376
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	270, 296
MaeII	ACGT	2 cut(s)	54, 186
MaeIII	GTNAC	1 cut(s)	58
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	3 cut(s)	54, 72, 186
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	34, 86, 106, 191, 302
MroXI	GAANNNNTTC	1 cut(s)	169
MspI	CCGG	2 cut(s)	23, 363
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	103, 235
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	134
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	2 cut(s)	55, 187
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	261
PspCI	CACGTG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	261
PsrI	GAACNNNNNNTAC	3 cut(s)	131, 163, 369
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	3 cut(s)	54, 72, 186
SfaNI	GCATC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	4 cut(s)	71, 134, 179, 339
SmoI	CTYRAG	4 cut(s)	71, 134, 179, 339
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	78, 153
SspMI	CTAG	2 cut(s)	270, 296
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	64, 128
TaiI	ACGT	2 cut(s)	57, 189
TaqI	TCGA	3 cut(s)	105, 135, 388
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	177
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	2 cut(s)	270, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.