Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011665

Physical Location & Seq

Genomic Coordinates Forward (+)

7176747 .. 7178895

Gene Structure 2149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20693.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGACCAAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCTGCTGCTAAGGACCCCAACAAACCAAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAAGAGGAGGAGGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

144

Amino Acids

15.98

Weight (kDa)

6.48

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	35 - 107	6.3e-15	HMG-box domain
HMG_box	PF00505	38 - 107	1.8e-23	HMG (high mobility group) box
HMG_WDHD1	PF24815	41 - 89	1.8e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20693 AT1G20693 AT1G20693 AT1G20696 AT1G20696 AT1G20696 AT1G20696 AT1G20696
fragaria_vesca	FvH4_5g25420
rosa_chinensis	RchiOBHm_Chr7g0215651
rosa_laevigata	RLG00000002633
rosa_multiflora	Rmu_sc0000898.1_g000029
rosa_roxburghii	Rroxscaffold_3G00243940
rosa_rugosa	Rorug07G0155900 Rorug07G0156000
rosa_samantha	Rh7AG292600 Rh7BG285200 Rh7CG312700
rosa_wichuraiana	Rw7G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	169, 293
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	8 cut(s)	11, 36, 43, 89, 200, 215, 257, 314
AluI	AGCT	8 cut(s)	11, 36, 43, 89, 200, 215, 257, 314
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	155, 216
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	89, 92, 215
AspS9I	GGNCC	2 cut(s)	100, 338
AvaII	GGWCC	2 cut(s)	100, 338
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	76, 79, 202
BccI	CCATC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	155, 216
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	3 cut(s)	90, 93, 216
BlsI	GCNGC	3 cut(s)	91, 94, 217
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	100, 338
BmgT120I	GGNCC	2 cut(s)	100, 338
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	2 cut(s)	240, 350
Bpu10I	CCTNAGC	3 cut(s)	96, 270, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	126, 333
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	397, 409
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	240, 267, 390
BseNI	ACTGG	2 cut(s)	126, 333
BseRI	GAGGAG	2 cut(s)	431, 434
BseXI	GCAGC	3 cut(s)	76, 79, 202
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	155, 216
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	241, 268, 391
BspLI	GGNNCC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	126, 333
BssAI	RCCGGY	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	63, 123
BstDEI	CTNAG	5 cut(s)	96, 249, 270, 276, 399
BstF5I	GGATG	2 cut(s)	397, 409
BstMAI	GTCTC	2 cut(s)	155, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	76, 79, 202
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	397, 409
BtsIMutI	CAGTG	2 cut(s)	133, 375
Cac8I	GCNNGC	2 cut(s)	63, 123
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	100, 338
CviAII	CATG	1 cut(s)	145
DdeI	CTNAG	5 cut(s)	96, 249, 270, 276, 399
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	100, 338
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	148
FaiI	YATR	3 cut(s)	146, 264, 297
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	90, 93, 216
FokI	GGATG	2 cut(s)	404, 416
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	90, 93, 216
GluI	GCNGC	3 cut(s)	90, 93, 216
GsuI	CTGGAG	2 cut(s)	240, 350
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	2 cut(s)	245, 356
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	4 cut(s)	244, 250, 361, 376
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	166, 329
HpyCH4III	ACNGT	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	5 cut(s)	96, 249, 270, 276, 399
Hsp92II	CATG	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
LmnI	GCTCC	5 cut(s)	8, 33, 41, 71, 262
LpnPI	CCDG	8 cut(s)	16, 43, 60, 75, 135, 139, 204, 314
Lsp1109I	GCAGC	3 cut(s)	76, 79, 202
LweI	GCATC	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	5 cut(s)	127, 161, 313, 359, 425
MhlI	GDGCHC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	111, 325, 346, 370, 382, 394, 409, 412, 415
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	309
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	245, 356
PkrI	GCNGC	3 cut(s)	91, 94, 217
PpuMI	RGGWCCY	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	100, 338
PspPPI	RGGWCCY	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	90, 93, 216
Sau96I	GGNCC	2 cut(s)	100, 338
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	100, 338
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	245, 356
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	133, 375
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	3 cut(s)	89, 92, 215
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	17, 133
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	133, 375
VpaK11BI	GGWCC	2 cut(s)	100, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.