Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011665

Physical Location & Seq

Genomic Coordinates Reverse (-)

16928630 .. 16930414

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAGGAGGCAAATCCAACGCCAAGAAAGCCGACTCCAAGTTGGCTGTGAATAAGAAGCCTGCTAAGGCTACTAGAGCGAGCAAGAAGGCCGCCAAGGATCCTAACAAGCCTAAGAGGCCCGCAAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGGAAGCAGTTCAATAAGGAAAACCCCAACAACAAAGCAGTTTCTGCTGTGGGCAAGGCTGCCGGTGCGAAATGGAAGTCAATGTCTGATGCTGAAAAGGCACCTTATGTGGCCAAGTCAGACAAGAGGAAGGTTGAGTACGAGAAATTAATGAAGGCTTATAACATGAAACAGGCTGAAGGCAACACCGCAGCAGAGGAAGAAGGATCTGAGGTGAATGATGATGAGGATGGAGATGAAGAAGGGAGCGATGAGGAGGATGATGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

7.75

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	35 - 107	7.1e-12	HMG-box domain
HMG_box	PF00505	38 - 107	4.3e-22	HMG (high mobility group) box
HMG_WDHD1	PF24815	41 - 89	5e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20693 AT1G20693 AT1G20693 AT1G20696 AT1G20696 AT1G20696 AT1G20696 AT1G20696
fragaria_vesca	FvH4_5g25420
rosa_chinensis	RchiOBHm_Chr7g0215651
rosa_laevigata	RLG00000002633
rosa_multiflora	Rmu_sc0000898.1_g000029
rosa_roxburghii	Rroxscaffold_3G00243940
rosa_rugosa	Rorug07G0155900 Rorug07G0156000
rosa_samantha	Rh7AG292600 Rh7BG285200 Rh7CG312700
rosa_wichuraiana	Rw7G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	3 cut(s)	93, 123, 345
AclWI	GGATC	3 cut(s)	95, 108, 370
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	169
AlwI	GGATC	3 cut(s)	95, 108, 370
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	90, 119, 267
ApeKI	GCWGC	2 cut(s)	215, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AseI	ATTAAT	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	2 cut(s)	202, 359
BccI	CCATC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	93, 216, 348
BlsI	GCNGC	3 cut(s)	94, 217, 349
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	102, 258
BmsI	GCATC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	391, 421
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	202, 359
BshFI	GGCC	3 cut(s)	92, 121, 269
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	219
BsnI	GGCC	3 cut(s)	92, 121, 269
Bsp143I	GATC	2 cut(s)	100, 362
BspACI	CCGC	3 cut(s)	93, 123, 345
BspANI	GGCC	3 cut(s)	92, 121, 269
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	102, 258
BspPI	GGATC	3 cut(s)	95, 108, 370
BspT107I	GGYRCC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	100, 362
BssT1I	CCWWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	63, 82, 123
BstDEI	CTNAG	3 cut(s)	66, 114, 366
BstF5I	GGATG	2 cut(s)	391, 421
BstKTI	GATC	2 cut(s)	103, 365
BstMBI	GATC	2 cut(s)	100, 362
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 77, 118, 200, 221, 254
BstV1I	GCAGC	2 cut(s)	202, 359
BstX2I	RGATCY	2 cut(s)	100, 362
BstYI	RGATCY	2 cut(s)	100, 362
BsuRI	GGCC	3 cut(s)	92, 121, 269
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	391, 421
Cac8I	GCNNGC	3 cut(s)	63, 82, 123
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	145, 322
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	66, 114, 366
DpnI	GATC	2 cut(s)	102, 364
DpnII	GATC	2 cut(s)	100, 362
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	148, 325
FaiI	YATR	4 cut(s)	146, 264, 318, 323
FatI	CATG	2 cut(s)	144, 321
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	93, 216, 348
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	93, 216, 348
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	3 cut(s)	93, 216, 348
HaeIII	GGCC	3 cut(s)	92, 121, 269
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	148, 325
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	244, 277, 367
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	7 cut(s)	82, 142, 280, 304, 329, 353, 392
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 77, 118, 200, 221, 254
HpyF3I	CTNAG	3 cut(s)	66, 114, 366
Hsp92II	CATG	2 cut(s)	148, 325
Kzo9I	GATC	2 cut(s)	100, 362
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	4 cut(s)	75, 142, 232, 314
Lsp1109I	GCAGC	2 cut(s)	202, 359
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	102, 364
MboI	GATC	2 cut(s)	100, 362
MboII	GAAGA	4 cut(s)	127, 161, 368, 407
MflI	RGATCY	2 cut(s)	100, 362
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	111, 276, 346, 361, 376, 403, 406
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	6 cut(s)	29, 77, 118, 200, 221, 254
NdeII	GATC	2 cut(s)	100, 362
NlaIII	CATG	2 cut(s)	148, 325
NlaIV	GGNNCC	2 cut(s)	102, 258
PdmI	GAANNNNTTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	94, 217, 349
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	102, 258
PspPI	GGNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	100, 362
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	93, 216, 348
Sau3AI	GATC	2 cut(s)	100, 362
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	29
SetI	ASST	3 cut(s)	262, 291, 372
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	3 cut(s)	93, 123, 345
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	96
TasI	AATT	1 cut(s)	302
TauI	GCSGC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	2 cut(s)	215, 347
TspDTI	ATGAA	5 cut(s)	17, 133, 323, 338, 408
VspI	ATTAAT	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.