Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011665

Physical Location & Seq

Genomic Coordinates Forward (+)

7179273 .. 7181574

Gene Structure 2302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20696.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAGCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTTGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGAGGAAGGCCCTAAGGAAGATGAGGAATCTGACAAGTCAGTTTCAGAGGTTAACGATGAGGATGATGCTGAGGATGGCAGTGAAGAGGAGGAAGACGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

141

Amino Acids

15.68

Weight (kDa)

5.71

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	32 - 104	6e-15	HMG-box domain
HMG_box	PF00505	35 - 104	1.2e-22	HMG (high mobility group) box
HMG_WDHD1	PF24815	38 - 86	4.9e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20693 AT1G20693 AT1G20693 AT1G20696 AT1G20696 AT1G20696 AT1G20696 AT1G20696
fragaria_vesca	FvH4_5g25420
rosa_chinensis	RchiOBHm_Chr7g0215651
rosa_laevigata	RLG00000002633
rosa_multiflora	Rmu_sc0000898.1_g000029
rosa_roxburghii	Rroxscaffold_3G00243940
rosa_rugosa	Rorug07G0155900 Rorug07G0156000
rosa_samantha	Rh7AG292600 Rh7BG285200 Rh7CG312700
rosa_wichuraiana	Rw7G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	11, 43, 206
AluI	AGCT	3 cut(s)	11, 43, 206
Alw21I	GWGCWC	2 cut(s)	38, 171
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	110, 328
ApeKI	GCWGC	2 cut(s)	83, 191
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	38, 171
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	70, 178
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	84, 192
BlsI	GCNGC	2 cut(s)	85, 193
Bme1390I	CCNGG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	73, 249
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	3 cut(s)	66, 261, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	388, 400
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	231, 381
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	179, 422
BseXI	GCAGC	2 cut(s)	70, 178
BshFI	GGCC	2 cut(s)	112, 330
BsiHKAI	GWGCWC	2 cut(s)	38, 171
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	2 cut(s)	112, 330
Bsp1286I	GDGCHC	2 cut(s)	38, 171
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	112, 330
BspCNI	CTCAG	2 cut(s)	232, 382
BspLI	GGNNCC	2 cut(s)	73, 249
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	9 cut(s)	18, 54, 66, 105, 174, 240, 261, 333, 390
BstF5I	GGATG	2 cut(s)	388, 400
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	70, 178
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	112, 330
BtsCI	GGATG	2 cut(s)	388, 400
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	124, 406
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	2 cut(s)	136, 298
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	9 cut(s)	18, 54, 66, 105, 174, 240, 261, 333, 390
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	139, 301
FaiI	YATR	4 cut(s)	137, 255, 288, 299
FatI	CATG	2 cut(s)	135, 297
Fnu4HI	GCNGC	2 cut(s)	84, 192
FokI	GGATG	2 cut(s)	395, 407
Fsp4HI	GCNGC	2 cut(s)	84, 192
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	84, 192
HaeIII	GGCC	2 cut(s)	112, 330
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	139, 301
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	2 cut(s)	236, 347
HpaI	GTTAAC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	235, 241, 352, 367
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	4 cut(s)	123, 133, 238, 320
HpyCH4IV	ACGT	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
HpyF3I	CTNAG	9 cut(s)	18, 54, 66, 105, 174, 240, 261, 333, 390
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	139, 301
HspAI	GCGC	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	5 cut(s)	8, 33, 71, 166, 253
LpnPI	CCDG	5 cut(s)	16, 43, 75, 130, 192
Lsp1109I	GCAGC	2 cut(s)	70, 178
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	49, 151
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	6 cut(s)	118, 152, 304, 350, 416, 425
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	38, 171
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	102, 157, 316, 337, 361, 373, 385, 400, 403
MseI	TTAA	2 cut(s)	372, 424
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	139, 301
NlaIV	GGNNCC	2 cut(s)	73, 249
NmuCI	GTSAC	2 cut(s)	49, 151
PceI	AGGCCT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	85, 193
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	73, 249
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	372, 424
SatI	GCNGC	2 cut(s)	84, 192
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	38, 171
SetI	ASST	8 cut(s)	13, 45, 82, 106, 158, 208, 282, 372
SfaNI	GCATC	1 cut(s)	376
Sse9I	AATT	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	158
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	372, 424
Tru9I	TTAA	2 cut(s)	372, 424
TscAI	CASTG	2 cut(s)	124, 406
TseFI	GTSAC	2 cut(s)	49, 151
TseI	GCWGC	2 cut(s)	83, 191
Tsp45I	GTSAC	2 cut(s)	49, 151
TspDTI	ATGAA	3 cut(s)	17, 124, 314
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	124, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.