Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011665

Physical Location & Seq

Genomic Coordinates Reverse (-)

37325527 .. 37327104

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAAGAGAGGTCGTGGATGATCCCTTCCATTTCCACGCGCACACACACCTCTCTCTCTCTCTCTCTCTATATCTCCTTCTCCTTCAAACCCTAACCCTACACCAACCAGGAATCGCCATGAAAGGAGGCAAATCCAACACCAAGAAAGCCGACTCCAAGCTTGCTGTGAATAAGAAGCCTGCTAAGGCTACTAGAGCGAGTAAGAAGGCCGCCAAGGACCCTAACAAGCCTAAGAGGCCGGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGGAAGCAGTTCAATAAGGAAAACCCCAACAACAAAGCAGTTTCCGCTGTGGGCAAAGCTGCTGGGGCAAAATGGAAGTCAATGTCTGAGGCTCCGCACTCCTTTTCTGTTGAGCATAAGATTGCTGAAGGCAACACTGCAGCGGAGGAAGAAGGATCTGAGGTGAATGATGATGAGGATGGAGATGAAGAAGGAAGTGATGAGGAGGATGATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

166

Amino Acids

18.06

Weight (kDa)

5.83

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	75 - 123	3.5e-07	HMG-box domain
HMG_box	PF00505	78 - 123	9.9e-14	HMG (high mobility group) box
HMG_WDHD1	PF24815	81 - 122	4.7e-09	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20693 AT1G20693 AT1G20693 AT1G20696 AT1G20696 AT1G20696 AT1G20696 AT1G20696
fragaria_vesca	FvH4_5g25420
rosa_chinensis	RchiOBHm_Chr7g0215651
rosa_laevigata	RLG00000002633
rosa_multiflora	Rmu_sc0000898.1_g000029
rosa_roxburghii	Rroxscaffold_3G00243940
rosa_rugosa	Rorug07G0155900 Rorug07G0156000
rosa_samantha	Rh7AG292600 Rh7BG285200 Rh7CG312700
rosa_wichuraiana	Rw7G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	213, 321, 371, 419
AclWI	GGATC	2 cut(s)	17, 439
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	89, 289
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	163, 335
AluI	AGCT	2 cut(s)	163, 335
AlwI	GGATC	2 cut(s)	17, 439
AoxI	GGCC	3 cut(s)	210, 239, 243
ApeKI	GCWGC	2 cut(s)	335, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	322, 428
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	414
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	213, 336, 417
BlsI	GCNGC	3 cut(s)	214, 337, 418
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	222, 369
BmrFI	CCNGG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	25, 460, 490
BseMII	CTCAG	2 cut(s)	354, 426
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	322, 428
BseYI	CCCAGC	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	212, 241, 245
BsiSI	CCGG	1 cut(s)	242
BsnI	GGCC	3 cut(s)	212, 241, 245
Bsp143I	GATC	2 cut(s)	22, 431
BspACI	CCGC	4 cut(s)	213, 321, 371, 419
BspANI	GGCC	3 cut(s)	212, 241, 245
BspCNI	CTCAG	2 cut(s)	355, 427
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	222, 369
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	2 cut(s)	17, 439
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	22, 431
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	165, 183, 243
BstDEI	CTNAG	4 cut(s)	186, 234, 363, 435
BstF5I	GGATG	3 cut(s)	25, 460, 490
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	25, 434
BstMBI	GATC	2 cut(s)	22, 431
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 238, 320, 341
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	322, 428
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	212, 241, 245
BtsCI	GGATG	3 cut(s)	25, 460, 490
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	253, 411
Cac8I	GCNNGC	3 cut(s)	165, 183, 243
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	2 cut(s)	121, 265
DdeI	CTNAG	4 cut(s)	186, 234, 363, 435
DpnI	GATC	2 cut(s)	24, 433
DpnII	GATC	2 cut(s)	22, 431
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	124, 268
FaiI	YATR	4 cut(s)	73, 122, 266, 393
FatI	CATG	2 cut(s)	120, 264
Fnu4HI	GCNGC	3 cut(s)	213, 336, 417
FokI	GGATG	2 cut(s)	32, 467
FseI	GGCCGGCC	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	213, 336, 417
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	213, 336, 417
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	212, 241, 245
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	124, 268
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	114, 155
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	364, 436
Hpy188III	TCNNGA	1 cut(s)	277
HpyAV	CCTTC	8 cut(s)	37, 89, 95, 202, 262, 398, 422, 461
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 238, 320, 341
HpyF3I	CTNAG	4 cut(s)	186, 234, 363, 435
Hsp92II	CATG	2 cut(s)	124, 268
HspAI	GCGC	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	22, 431
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	96, 123, 195, 255, 259, 262, 324
Lsp1109I	GCAGC	2 cut(s)	322, 428
MaeI	CTAG	1 cut(s)	195
MalI	GATC	2 cut(s)	24, 433
MboI	GATC	2 cut(s)	22, 431
MboII	GAAGA	5 cut(s)	18, 247, 281, 437, 476
MflI	RGATCY	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	323, 419
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	197, 238, 320, 341
NaeI	GCCGGC	1 cut(s)	243
NdeII	GATC	2 cut(s)	22, 431
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	124, 268
NlaIV	GGNNCC	2 cut(s)	222, 369
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	214, 337, 418
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	222, 369
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	431
RigI	GGCCGGCC	1 cut(s)	245
SatI	GCNGC	3 cut(s)	213, 336, 417
Sau3AI	GATC	2 cut(s)	22, 431
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	5 cut(s)	15, 54, 165, 337, 441
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	220
SsiI	CCGC	4 cut(s)	213, 321, 371, 419
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	216
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	114
TscAI	CASTG	2 cut(s)	253, 418
TseI	GCWGC	2 cut(s)	335, 416
TspDTI	ATGAA	3 cut(s)	137, 253, 477
TspRI	CASTG	2 cut(s)	253, 418
VpaK11BI	GGWCC	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.