AT1G22200

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020163
Physical Location & Seq
Reverse (-)
7837563 .. 7840898
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22200.2

Sequence Viewer

Length: 1161 bp
ATGGTCGGCGTGATGAACAGATTGAGGAATCTGGACGCTTACCCTAAAATCAATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCAGCTGTACATTCACCCGGTTACTGAGACTCAGCTTCGTGTTGATACATCAAGAGGAGAGAAGCTACGGATTAATTTTGATGTTACATTCCCTGCGCTTCAATGTTCGATTATTAGTCTTGATTCCATGGATATCAGTGGGGAGAGGCACCTTGATGTGCGACATGACATTATTAAAAGGAGATTAGACTCTTCTGGCAATGTCATCGAGGCAAAACAAGACGGAATTGGTCATACTAAGATTGAAAAACCTTTACAAAAACATGGTGGAAGGTTGGAACACAATGAAACATACTGTGGTTCCTGTTTTGGAGCAGAAGCGTCAGATGATGCTTGTTGTAATTCATGTGAGGAAGTTCGCGAAGCTTACCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAGTGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGATGAAGAAGGTGAAGGTTGTAATGTTCACGGTTTCTTGGAAGTTAACAAAGTTGCTGGGAACTTTCATTTCATTCCTGGGCAAAGCTTTCATCAATCCGGTTTTCAATTTCATGATATGTTATTGTTCCAGCAAGGCAACTACAATATTAGCCACAAGGTCAACAGGTTGGCCTTTGGAGACTTTTTCCCCGGTGTAGTGAACCCTCTTGATGGTGTGCAGTGGAATCAGGGGAAACAGAGTGGCGTCTATCAATACTTCATCAAGGTGGTACCAAGCATATACACCGATGTTCACCAGAATACAATACAGTCAAACCAGTTCTCTGTGACAGAACATTTCCAGAACATGGAAGCAGGTCGCATGCAATCTCCGCCTGGTGTTTTCTTCTACTATGATCTATCGCCAATTAAGGTGATATTTGAGGAGCAACATGTGGAGTTCTTGCACTTCCTAACAAATGTTTGCGCTATAGTAGGAGGTATCTTCACGGTATCGGGAATAGTAGATTCGTTCATATACCATGGACAACGAGCAATTAAGAAGAAAATGGAGATTGGTAAATTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

386

Amino Acids

43.8

Weight (kDa)

6.15

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 97 7e-32 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 149 - 335 2.5e-68 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22200 AT1G22200
malus_domestica MD05G1045400.v1.1 MD10G1052300.v1.1
prunus_persica Prupe.8G062600_v2.0.a1
pyrus_communis pycom10g03700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 935
Acc65I GGTACC 1 cut(s) 859
AccB1I GGYRCC 2 cut(s) 288, 859
AccB7I CCANNNNNTGG 1 cut(s) 937
AccII CGCG 1 cut(s) 501
AciI CCGC 1 cut(s) 962
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 3 cut(s) 73, 149, 861
AfiI CCNNNNNNNGG 2 cut(s) 800, 937
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 4 cut(s) 242, 386, 695, 1156
AjnI CCWGG 2 cut(s) 664, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 6 cut(s) 139, 145, 175, 205, 506, 675
AluI AGCT 6 cut(s) 139, 145, 175, 205, 506, 675
Alw26I GTCTC 2 cut(s) 161, 762
AoxI GGCC 2 cut(s) 525, 759
ApaI GGGCCC 1 cut(s) 529
ApoI RAATTY 1 cut(s) 1151
AseI ATTAAT 1 cut(s) 213
Asp718I GGTACC 1 cut(s) 859
AspLEI GCGC 2 cut(s) 238, 1058
AspS9I GGNCC 3 cut(s) 525, 526, 535
AsuC2I CCSGG 2 cut(s) 158, 780
AsuHPI GGTGA 5 cut(s) 85, 146, 611, 875, 1015
AvaII GGWCC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 288, 859
BanII GRGCYC 1 cut(s) 529
BccI CCATC 1 cut(s) 794
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 2 cut(s) 666, 966
BcnI CCSGG 2 cut(s) 158, 780
BcoDI GTCTC 2 cut(s) 161, 762
BfmI CTRYAG 2 cut(s) 64, 1059
BfuAI ACCTGC 1 cut(s) 935
Bme1390I CCNGG 4 cut(s) 158, 666, 780, 966
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 525, 526, 535
BmiI GGNNCC 5 cut(s) 290, 442, 527, 537, 861
BmrFI CCNGG 4 cut(s) 158, 666, 780, 966
BmsI GCATC 1 cut(s) 460
BpuMI CCSGG 2 cut(s) 158, 780
BsaHI GRCGYC 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 267, 665, 778, 1111
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 937
Bse1I ACTGG 2 cut(s) 553, 907
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 666, 966
BseDI CCNNGG 4 cut(s) 267, 665, 778, 1111
BseLI CCNNNNNNNGG 2 cut(s) 800, 937
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 156, 185
BseNI ACTGG 2 cut(s) 553, 907
BseRI GAGGAG 2 cut(s) 210, 1028
BseSI GKGCMC 1 cut(s) 529
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 527, 761
BshNI GGYRCC 2 cut(s) 288, 859
BsiSI CCGG 3 cut(s) 158, 687, 780
BslI CCNNNNNNNGG 2 cut(s) 800, 937
BsmAI GTCTC 2 cut(s) 161, 762
BsnI GGCC 2 cut(s) 527, 761
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 985
Bsp19I CCATGG 2 cut(s) 267, 1111
Bsp68I TCGCGA 1 cut(s) 501
BspACI CCGC 1 cut(s) 962
BspANI GGCC 2 cut(s) 527, 761
BspCNI CTCAG 2 cut(s) 157, 184
BspFNI CGCG 1 cut(s) 501
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 5 cut(s) 290, 442, 527, 537, 861
BspMI ACCTGC 1 cut(s) 935
BspT107I GGYRCC 2 cut(s) 288, 859
BsrDI GCAATG 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 2 cut(s) 553, 907
BssECI CCNNGG 4 cut(s) 267, 665, 778, 1111
BssMI GATC 1 cut(s) 985
BssNI GRCGYC 1 cut(s) 834
BssT1I CCWWGG 2 cut(s) 267, 1111
Bst2UI CCWGG 2 cut(s) 666, 966
Bst4CI ACNGT 4 cut(s) 437, 620, 900, 1081
Bst6I CTCTTC 3 cut(s) 109, 131, 337
BstACI GRCGYC 1 cut(s) 834
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 953
BstDEI CTNAG 3 cut(s) 165, 171, 378
BstDSI CCRYGG 2 cut(s) 267, 1111
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 2 cut(s) 238, 1058
BstKTI GATC 1 cut(s) 988
BstMAI GTCTC 2 cut(s) 161, 762
BstMBI GATC 1 cut(s) 985
BstMWI GCNNNNNNNGC 1 cut(s) 961
BstNI CCWGG 2 cut(s) 666, 966
BstNSI RCATGY 2 cut(s) 955, 1025
BstSCI CCNGG 4 cut(s) 156, 664, 778, 964
BstSFI CTRYAG 2 cut(s) 64, 1059
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 1 cut(s) 501
BsuRI GGCC 2 cut(s) 527, 761
BtgI CCRYGG 2 cut(s) 267, 1111
BtsI GCAGTG 1 cut(s) 815
BtsIMutI CAGTG 3 cut(s) 283, 560, 815
BtuMI TCGCGA 1 cut(s) 501
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 1 cut(s) 953
CciI TCATGA 1 cut(s) 700
CfoI GCGC 2 cut(s) 238, 1058
Cfr13I GGNCC 3 cut(s) 525, 526, 535
CseI GACGC 3 cut(s) 44, 450, 823
Csp6I GTAC 3 cut(s) 72, 148, 860
CviQI GTAC 3 cut(s) 72, 148, 860
DdeI CTNAG 3 cut(s) 165, 171, 378
DpnI GATC 1 cut(s) 987
DpnII GATC 1 cut(s) 985
Eam1104I CTCTTC 3 cut(s) 109, 131, 337
EarI CTCTTC 3 cut(s) 109, 131, 337
EciI GGCGGA 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 267, 1111
Eco24I GRGCYC 1 cut(s) 529
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 664, 964
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 267, 1111
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 267, 1111
FriOI GRGCYC 1 cut(s) 529
GlaI GCGC 2 cut(s) 237, 1057
GsaI CCCAGC 1 cut(s) 648
HaeIII GGCC 2 cut(s) 527, 761
HapII CCGG 3 cut(s) 158, 687, 780
HgaI GACGC 3 cut(s) 44, 450, 823
HhaI GCGC 2 cut(s) 238, 1058
Hin1I GRCGYC 1 cut(s) 834
Hin6I GCGC 2 cut(s) 236, 1056
HinP1I GCGC 2 cut(s) 236, 1056
HincII GTYRAC 2 cut(s) 634, 751
HindII GTYRAC 2 cut(s) 634, 751
HindIII AAGCTT 2 cut(s) 504, 673
HinfI GANTC 7 cut(s) 28, 169, 263, 329, 542, 814, 1097
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 3 cut(s) 158, 687, 780
HphI GGTGA 5 cut(s) 85, 146, 611, 875, 1015
Hpy166II GTNNAC 5 cut(s) 616, 634, 751, 790, 883
Hpy188I TCNGA 3 cut(s) 136, 466, 535
Hpy188III TCNNGA 8 cut(s) 32, 192, 260, 500, 701, 797, 931, 1086
Hpy8I GTNNAC 5 cut(s) 616, 634, 751, 790, 883
HpyAV CCTTC 4 cut(s) 405, 560, 590, 596
HpyCH4III ACNGT 4 cut(s) 437, 620, 900, 1081
HpyCH4V TGCA 4 cut(s) 577, 808, 955, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 961
HpyF3I CTNAG 3 cut(s) 165, 171, 378
Hsp92I GRCGYC 1 cut(s) 834
HspAI GCGC 2 cut(s) 236, 1056
KpnI GGTACC 1 cut(s) 863
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 1 cut(s) 985
LmnI GCTCC 2 cut(s) 452, 1015
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 3 cut(s) 160, 223, 916
MalI GATC 1 cut(s) 987
MboI GATC 1 cut(s) 985
MboII GAAGA 9 cut(s) 68, 96, 118, 121, 324, 605, 967, 1066, 1144
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 8 cut(s) 120, 214, 366, 481, 695, 996, 1125, 1151
MlyI GAGTC 2 cut(s) 163, 323
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 5 cut(s) 213, 315, 633, 999, 1128
MslI CAYNNNNRTG 2 cut(s) 294, 854
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 3 cut(s) 158, 687, 780
MspR9I CCNGG 4 cut(s) 158, 666, 780, 966
MvaI CCWGG 2 cut(s) 666, 966
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 961
NciI CCSGG 2 cut(s) 158, 780
NcoI CCATGG 2 cut(s) 267, 1111
NdeII GATC 1 cut(s) 985
NlaIV GGNNCC 5 cut(s) 290, 442, 527, 537, 861
NmuCI GTSAC 1 cut(s) 916
NruI TCGCGA 1 cut(s) 501
NspI RCATGY 2 cut(s) 955, 1025
PaeI GCATGC 1 cut(s) 955
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 1021
PfeI GAWTC 5 cut(s) 28, 263, 542, 814, 1097
PflMI CCANNNNNTGG 1 cut(s) 937
PleI GAGTC 2 cut(s) 163, 323
PpsI GAGTC 2 cut(s) 163, 323
PscI ACATGT 1 cut(s) 1021
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 664, 964
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 2 cut(s) 664, 964
PspN4I GGNNCC 5 cut(s) 290, 442, 527, 537, 861
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 3 cut(s) 525, 526, 535
PvuII CAGCTG 1 cut(s) 145
RruI TCGCGA 1 cut(s) 501
RsaI GTAC 3 cut(s) 73, 149, 861
RsaNI GTAC 3 cut(s) 72, 148, 860
RseI CAYNNNNRTG 2 cut(s) 294, 854
SaqAI TTAA 5 cut(s) 213, 315, 633, 999, 1128
Sau3AI GATC 1 cut(s) 985
Sau96I GGNCC 3 cut(s) 525, 526, 535
SchI GAGTC 2 cut(s) 163, 323
ScrFI CCNGG 4 cut(s) 158, 666, 780, 966
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 64, 1059
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 2 cut(s) 294, 854
SphI GCATGC 1 cut(s) 955
Sse9I AATT 8 cut(s) 120, 214, 366, 481, 695, 996, 1125, 1151
SsiI CCGC 1 cut(s) 962
SspI AATATT 1 cut(s) 736
StyD4I CCNGG 4 cut(s) 156, 664, 778, 964
StyI CCWWGG 2 cut(s) 267, 1111
TaaI ACNGT 4 cut(s) 437, 620, 900, 1081
TaqI TCGA 3 cut(s) 248, 348, 549
TasI AATT 8 cut(s) 120, 214, 366, 481, 695, 996, 1125, 1151
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 5 cut(s) 28, 263, 542, 814, 1097
Tru1I TTAA 5 cut(s) 213, 315, 633, 999, 1128
Tru9I TTAA 5 cut(s) 213, 315, 633, 999, 1128
TscAI CASTG 3 cut(s) 283, 560, 815
TseFI GTSAC 1 cut(s) 916
Tsp45I GTSAC 1 cut(s) 916
TspGWI ACGGA 2 cut(s) 223, 378
TspRI CASTG 3 cut(s) 283, 560, 815
Van91I CCANNNNNTGG 1 cut(s) 937
VpaK11BI GGWCC 1 cut(s) 535
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 1151
XceI RCATGY 2 cut(s) 955, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.