Prupe.8G062600_v2.0.a1

Endoplasmic reticulum-Golgi intermediate compartment protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0020163
Physical Location & Seq
Reverse (-)
9055067 .. 9064819
9753 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G062600.2

Sequence Viewer

Length: 1161 bp
ATGGACAGCATCCTTCAGAAGCTGAGGAATTTGGACGCCTACCCTAAAATCAATGACGATTTCTTCAGCCGTACACTCTCCGGTGGCATTATTACCCTCGCCTCTTCCCTCCTTATCCTCTTGCTTTTCTTCTCTGAGCTCAGACTATACCTCCACACTGTTACAGAGTCAAAGCTGCTTGTAGATGCTTCAAGAGGAGAAACCTTACATATCAATTTTGATGTAACTTTTCCTGCTATCCGGTGCTCATTACTCAGTCTTGACACAATGGATATCAGTGGAGAACAACATTTTGACATACGACACGATATAGTCAAGAAAAGAATTGATGCTCATGGTAATGTAATAGAAGCTAAGAAGGATGGAATTGGCGCACCAAAGATTGATAATCCCTTGCAAAGGCATGGTGGAAGGCTTGAGCATAACGAAAAATATTGTGGTTCGTGCTTTGGAGCAGAAATGTCTGATGATGACTGTTGCAACTCATGCGATGAAGTTCGTGATGCATATAGGAAAAAAGGTTGGGCACTGACAAATGCAGATATGATAGACCAGTGCAAACGGGAAGGTTTTATTCAAAAGATTAAAGATGAAGATGGTGAAGGATGTAACATTGAAGGATCTCTTGAAGTTAATAAAGTGGCTGGTAATTTTCATTTTGTATCTGGAAAAAGCTTTCACCAGTCAAATATTCATGTGCAGGATTTGCTGGCTTTCCAGACAGATAGTTACAATATAAGTCACAAGATCAATAGATTAGCTTTTGGTGACTACTTTCCTGGCAAGCTAAATCCCCTTGATGGTGTACAGTGGAGGCAGGAAACACCGAATGGTATGTACCAGTATTTCATCAAGGTGGTCCCTACGTTATACACCAATATTAGAGGCCGTACAATTCGCTCAAATCAGTACTCTGTGACAGAGCATTTTAAGAGTTCAGAGTTGGGACACTCTCAGCTGCTTCCAGGAGTTTTCTTCTTTTATGATCTTTCTCCAATTAAGGTGACATTGAAAGAAGAACATGTTCCATTTTTACACTTTATGACCCATATTTGTGCCATAGTTGGAGGTATATTTACCGTTGCAGGACTTATAGATTCGTTTGTATATCATGGTCAAAGAGCAATGAAGAAAAAGATGGAAATCGGAAAGTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

387

Amino Acids

43.7

Weight (kDa)

6.49

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22200 AT1G22200
malus_domestica MD05G1045400.v1.1 MD10G1052300.v1.1
prunus_persica Prupe.8G062600_v2.0.a1
pyrus_communis pycom10g03700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 628
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 5 cut(s) 73, 807, 839, 892, 911
AfiI CCNNNNNNNGG 2 cut(s) 399, 800
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 5 cut(s) 192, 578, 617, 629, 1012
AjnI CCWGG 2 cut(s) 778, 964
AluBI AGCT 8 cut(s) 22, 139, 175, 353, 675, 761, 787, 958
AluI AGCT 8 cut(s) 22, 139, 175, 353, 675, 761, 787, 958
Alw21I GWGCWC 2 cut(s) 141, 248
AlwI GGATC 1 cut(s) 628
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 1 cut(s) 886
ApeKI GCWGC 2 cut(s) 175, 958
ApoI RAATTY 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 1023
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 859
AsuHPI GGTGA 4 cut(s) 611, 671, 779, 1015
AvaII GGWCC 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 141, 248
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 162, 945
BccI CCATC 4 cut(s) 356, 590, 794, 1132
BceAI ACGGC 2 cut(s) 54, 873
BciT130I CCWGG 2 cut(s) 780, 966
BisI GCNGC 2 cut(s) 176, 959
BlsI GCNGC 2 cut(s) 177, 960
BmcAI AGTACT 1 cut(s) 911
Bme1390I CCNGG 2 cut(s) 780, 966
Bme18I GGWCC 1 cut(s) 859
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 2 cut(s) 780, 966
BmsI GCATC 4 cut(s) 18, 175, 319, 493
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 1142
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 2 cut(s) 80, 240
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 800
Bse1I ACTGG 3 cut(s) 553, 682, 841
Bse3DI GCAATG 1 cut(s) 1131
Bse8I GATNNNNATC 1 cut(s) 1142
BseBI CCWGG 2 cut(s) 780, 966
BseGI GGATG 3 cut(s) 9, 367, 611
BseJI GATNNNNATC 1 cut(s) 1142
BseLI CCNNNNNNNGG 2 cut(s) 399, 800
BseMI GCAATG 1 cut(s) 1131
BseMII CTCAG 5 cut(s) 14, 126, 154, 268, 968
BseNI ACTGG 3 cut(s) 553, 682, 841
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 2 cut(s) 162, 945
BsgI GTGCAG 1 cut(s) 719
BshFI GGCC 1 cut(s) 888
BsiHKAI GWGCWC 2 cut(s) 141, 248
BsiSI CCGG 2 cut(s) 81, 241
BslFI GGGAC 2 cut(s) 845, 960
BslI CCNNNNNNNGG 2 cut(s) 399, 800
BsmFI GGGAC 2 cut(s) 845, 960
BsnI GGCC 1 cut(s) 888
Bsp1286I GDGCHC 3 cut(s) 141, 248, 529
Bsp1407I TGTACA 1 cut(s) 805
Bsp143I GATC 3 cut(s) 620, 747, 985
BspANI GGCC 1 cut(s) 888
BspCNI CTCAG 5 cut(s) 15, 127, 153, 267, 967
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 1131
BsrGI TGTACA 1 cut(s) 805
BsrI ACTGG 3 cut(s) 553, 682, 841
BssMI GATC 3 cut(s) 620, 747, 985
BssNI GRCGYC 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 780, 966
Bst4CI ACNGT 4 cut(s) 160, 476, 810, 1081
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 2 cut(s) 486, 706
BstAUI TGTACA 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 711, 785
BstDEI CTNAG 6 cut(s) 23, 135, 140, 254, 354, 954
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 9, 367, 611
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 3 cut(s) 623, 750, 988
BstMBI GATC 3 cut(s) 620, 747, 985
BstMWI GCNNNNNNNGC 2 cut(s) 486, 706
BstNI CCWGG 2 cut(s) 780, 966
BstNSI RCATGY 1 cut(s) 1025
BstSCI CCNGG 2 cut(s) 778, 964
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 2 cut(s) 162, 945
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
BsuRI GGCC 1 cut(s) 888
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 3 cut(s) 9, 367, 611
BtsIMutI CAGTG 5 cut(s) 156, 283, 527, 560, 815
Cac8I GCNNGC 2 cut(s) 711, 785
CaiI CAGNNNCTG 1 cut(s) 22
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 859
CseI GACGC 1 cut(s) 44
Csp6I GTAC 5 cut(s) 72, 806, 838, 891, 910
CviAII CATG 6 cut(s) 335, 404, 486, 695, 1022, 1112
CviQI GTAC 5 cut(s) 72, 806, 838, 891, 910
DdeI CTNAG 6 cut(s) 23, 135, 140, 254, 354, 954
DpnI GATC 3 cut(s) 622, 749, 987
DpnII GATC 3 cut(s) 620, 747, 985
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 778, 964
EcoRV GATATC 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 6 cut(s) 338, 407, 489, 698, 1025, 1115
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 2 cut(s) 845, 960
FatI CATG 6 cut(s) 334, 403, 485, 694, 1021, 1111
Fnu4HI GCNGC 2 cut(s) 176, 959
FokI GGATG 2 cut(s) 374, 618
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 176, 959
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 176, 959
HaeIII GGCC 1 cut(s) 888
HapII CCGG 2 cut(s) 81, 241
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 6 cut(s) 338, 407, 489, 698, 1025, 1115
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 2 cut(s) 167, 1097
HpaII CCGG 2 cut(s) 81, 241
HphI GGTGA 4 cut(s) 611, 671, 779, 1015
Hpy166II GTNNAC 2 cut(s) 74, 806
Hpy188I TCNGA 6 cut(s) 18, 136, 143, 466, 940, 1148
Hpy188III TCNNGA 7 cut(s) 192, 260, 316, 500, 626, 666, 718
Hpy8I GTNNAC 2 cut(s) 74, 806
HpyAV CCTTC 6 cut(s) 23, 352, 405, 560, 596, 611
HpyCH4III ACNGT 4 cut(s) 160, 476, 810, 1081
HpyCH4IV ACGT 1 cut(s) 866
HpyCH4V TGCA 7 cut(s) 397, 480, 506, 539, 558, 700, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 486, 706
HpyF3I CTNAG 6 cut(s) 23, 135, 140, 254, 354, 954
HpySE526I ACGT 1 cut(s) 866
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 6 cut(s) 338, 407, 489, 698, 1025, 1115
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 3 cut(s) 620, 747, 985
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 2 cut(s) 162, 945
LweI GCATC 4 cut(s) 18, 175, 319, 493
MaeII ACGT 1 cut(s) 866
MaeIII GTNAC 8 cut(s) 160, 223, 608, 728, 740, 767, 916, 1003
MalI GATC 3 cut(s) 622, 749, 987
MboI GATC 3 cut(s) 620, 747, 985
MboII GAAGA 7 cut(s) 55, 96, 121, 605, 967, 1028, 1141
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 3 cut(s) 141, 248, 529
MluCI AATT 7 cut(s) 28, 214, 324, 366, 649, 894, 996
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 1045
Mph1103I ATGCAT 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 1023
MseI TTAA 4 cut(s) 585, 633, 930, 999
MslI CAYNNNNRTG 3 cut(s) 339, 854, 1053
MspA1I CMGCKG 1 cut(s) 958
MspI CCGG 2 cut(s) 81, 241
MspR9I CCNGG 2 cut(s) 780, 966
MvaI CCWGG 2 cut(s) 780, 966
MwoI GCNNNNNNNGC 2 cut(s) 486, 706
NdeII GATC 3 cut(s) 620, 747, 985
NlaIII CATG 6 cut(s) 338, 407, 489, 698, 1025, 1115
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 4 cut(s) 740, 767, 916, 1003
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 1025
PciI ACATGT 1 cut(s) 1021
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 1 cut(s) 1097
PfoI TCCNGGA 1 cut(s) 964
PkrI GCNGC 2 cut(s) 177, 960
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PscI ACATGT 1 cut(s) 1021
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 778, 964
PspGI CCWGG 2 cut(s) 778, 964
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 958
RsaI GTAC 5 cut(s) 73, 807, 839, 892, 911
RsaNI GTAC 5 cut(s) 72, 806, 838, 891, 910
RseI CAYNNNNRTG 3 cut(s) 339, 854, 1053
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 585, 633, 930, 999
SatI GCNGC 2 cut(s) 176, 959
Sau3AI GATC 3 cut(s) 620, 747, 985
Sau96I GGNCC 1 cut(s) 859
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 780, 966
SduI GDGCHC 3 cut(s) 141, 248, 529
SfaNI GCATC 4 cut(s) 18, 175, 319, 493
SinI GGWCC 1 cut(s) 859
SmiMI CAYNNNNRTG 3 cut(s) 339, 854, 1053
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 7 cut(s) 28, 214, 324, 366, 649, 894, 996
SspI AATATT 3 cut(s) 434, 691, 880
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 778, 964
TaaI ACNGT 4 cut(s) 160, 476, 810, 1081
TaiI ACGT 1 cut(s) 869
TasI AATT 7 cut(s) 28, 214, 324, 366, 649, 894, 996
TatI WGTACW 2 cut(s) 805, 909
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 4 cut(s) 585, 633, 930, 999
Tru9I TTAA 4 cut(s) 585, 633, 930, 999
TscAI CASTG 5 cut(s) 163, 283, 534, 560, 815
TseFI GTSAC 4 cut(s) 740, 767, 916, 1003
TseI GCWGC 2 cut(s) 175, 958
Tsp45I GTSAC 4 cut(s) 740, 767, 916, 1003
TspDTI ATGAA 6 cut(s) 507, 606, 644, 683, 838, 1142
TspRI CASTG 5 cut(s) 163, 283, 534, 560, 815
VpaK11BI GGWCC 1 cut(s) 859
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 1025
XmnI GAANNNNTTC 1 cut(s) 1023
ZrmI AGTACT 1 cut(s) 911
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.