AT1G22840

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011935
Physical Location & Seq
Forward (+)
8079287 .. 8080574
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22840.1

Sequence Viewer

Length: 345 bp
ATGGCGTCGTTTGATGAAGCACCACCAGGAAACGCCAAGGCCGGTGAGAAGATCTTCAGGACCAAGTGTGCTCAGTGTCACACCGTCGAAGCAGGCGCCGGTCACAAACAAGGACCCAATCTAAACGGTCTATTTGGAAGACAATCTGGTACAACTGCTGGTTACTCTTACTCTGCTGCTAACAAGAACAAAGCTGTGGAATGGGAAGAGAAGGCCTTGTACGATTACTTGCTCAACCCCAAGAAGTACATACCAGGTACCAAGATGGTGTTCCCTGGGCTAAAGAAGCCGCAAGACCGTGCTGATCTCATCGCCTACTTGAAGGAATCTACTGCGCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005773 GO:0005774 GO:0005829 GO:0006091 GO:0006119 GO:0006122 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0010336 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0031090 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042592 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0048878 GO:0050801 GO:0055081 GO:0055086 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072521 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 ko01524 ko02020 ko04115 ko04210 ko04214 ko04215 ko04932 ko05010 ko05012 ko05014 ko05016 ko05134 ko05145 ko05152 ko05161 ko05164 ko05167 ko05168 ko05200 ko05210 ko05222 ko05416 map00920 map01100 map01120 map01524 map02020 map04115 map04210 map04214 map04215 map04932 map05010 map05012 map05014 map05016 map05134 map05145 map05152 map05161 map05164 map05167 map05168 map05200 map05210 map05222 map05416
Pfam Domains
Protein Families
Cytochrom_C

Protein Analysis

114

Amino Acids

12.39

Weight (kDa)

9.34

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 11 - 107 4.4e-06 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_C PF00034 12 - 109 1.7e-12 Cytochrome c
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22840 AT1G22840 AT4G10040
fragaria_vesca FvH4_5g33350
malus_domestica MD08G1213100.v1.1 MD15G1395600.v1.1
prunus_persica Prupe.1G544400_v2.0.a1 Prupe.1G544400_v2.0.a1
pyrus_communis pycom08g18300
rosa_chinensis RchiOBHm_Chr7g0232081
rosa_laevigata RLG00000001393
rosa_multiflora Rmu_sc0004618.1_g000007
rosa_roxburghii Rroxscaffold_3G00228830
rosa_rugosa Rorug07G0268900
rosa_samantha Rh7AG423500 Rh7BG397500 Rh7CG443800 Rh7DG415600
rosa_wichuraiana Rw7G035020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 2 cut(s) 95, 257
AciI CCGC 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 2 cut(s) 5, 96
AfaI GTAC 4 cut(s) 151, 221, 248, 259
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 3 cut(s) 25, 253, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 2 cut(s) 39, 213
ApeKI GCWGC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 98, 337
AspS9I GGNCC 2 cut(s) 60, 113
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 60, 113
BanI GGYRCC 2 cut(s) 95, 257
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 3 cut(s) 27, 255, 276
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 51
BisI GCNGC 2 cut(s) 177, 290
BlsI GCNGC 2 cut(s) 178, 291
Bme1390I CCNGG 3 cut(s) 27, 255, 276
Bme18I GGWCC 2 cut(s) 60, 113
BmgT120I GGNCC 2 cut(s) 60, 113
BmiI GGNNCC 3 cut(s) 97, 115, 259
BmrFI CCNGG 3 cut(s) 27, 255, 276
BpiI GAAGAC 1 cut(s) 145
BsaHI GRCGYC 2 cut(s) 5, 96
BsaJI CCNNGG 3 cut(s) 36, 274, 275
Bse118I RCCGGY 2 cut(s) 41, 98
BseBI CCWGG 3 cut(s) 27, 255, 276
BseDI CCNNGG 3 cut(s) 36, 274, 275
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 2 cut(s) 41, 215
BshNI GGYRCC 2 cut(s) 95, 257
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 42, 99
BsnI GGCC 2 cut(s) 41, 215
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 51, 304
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 41, 215
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 3 cut(s) 97, 115, 259
BspT107I GGYRCC 2 cut(s) 95, 257
BsrFI RCCGGY 2 cut(s) 41, 98
BssAI RCCGGY 2 cut(s) 41, 98
BssECI CCNNGG 3 cut(s) 36, 274, 275
BssMI GATC 2 cut(s) 51, 304
BssNI GRCGYC 2 cut(s) 5, 96
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 3 cut(s) 27, 255, 276
Bst4CI ACNGT 3 cut(s) 85, 128, 299
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 2 cut(s) 5, 96
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 72, 339
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 337
BstKTI GATC 2 cut(s) 54, 307
BstMBI GATC 2 cut(s) 51, 304
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 3 cut(s) 27, 255, 276
BstSCI CCNGG 3 cut(s) 25, 253, 274
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 2 cut(s) 41, 215
BtgZI GCGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 2 cut(s) 98, 337
Cfr10I RCCGGY 2 cut(s) 41, 98
Cfr13I GGNCC 2 cut(s) 60, 113
CsiI ACCWGGT 1 cut(s) 253
Csp6I GTAC 4 cut(s) 150, 220, 247, 258
CviJI RGCY 5 cut(s) 41, 194, 215, 280, 289
CviKI_1 RGCY 5 cut(s) 41, 194, 215, 280, 289
CviQI GTAC 4 cut(s) 150, 220, 247, 258
DdeI CTNAG 2 cut(s) 72, 339
DinI GGCGCC 1 cut(s) 97
DpnI GATC 2 cut(s) 53, 306
DpnII GATC 2 cut(s) 51, 304
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 60, 113
Eco57I CTGAAG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 3 cut(s) 25, 253, 274
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 1 cut(s) 251
Fnu4HI GCNGC 2 cut(s) 177, 290
Fsp4HI GCNGC 2 cut(s) 177, 290
GlaI GCGC 2 cut(s) 97, 336
GluI GCNGC 2 cut(s) 177, 290
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 41, 215
HapII CCGG 2 cut(s) 42, 99
HhaI GCGC 2 cut(s) 98, 337
Hin1I GRCGYC 2 cut(s) 5, 96
Hin6I GCGC 2 cut(s) 96, 335
HinP1I GCGC 2 cut(s) 96, 335
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 42, 99
HphI GGTGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 10, 89
HpyAV CCTTC 2 cut(s) 205, 316
HpyCH4III ACNGT 3 cut(s) 85, 128, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 72, 339
Hsp92I GRCGYC 2 cut(s) 5, 96
HspAI GCGC 2 cut(s) 96, 335
KasI GGCGCC 1 cut(s) 95
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 51, 304
Lsp1109I GCAGC 1 cut(s) 163
MabI ACCWGGT 1 cut(s) 253
MaeIII GTNAC 3 cut(s) 77, 101, 161
MalI GATC 2 cut(s) 53, 306
MboI GATC 2 cut(s) 51, 304
MboII GAAGA 4 cut(s) 46, 61, 150, 218
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 53
MspI CCGG 2 cut(s) 42, 99
MspR9I CCNGG 3 cut(s) 27, 255, 276
MvaI CCWGG 3 cut(s) 27, 255, 276
MwoI GCNNNNNNNGC 1 cut(s) 286
NarI GGCGCC 1 cut(s) 96
NdeII GATC 2 cut(s) 51, 304
NlaIV GGNNCC 3 cut(s) 97, 115, 259
NmuCI GTSAC 2 cut(s) 77, 101
PasI CCCWGGG 1 cut(s) 275
PceI AGGCCT 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 178, 291
PluTI GGCGCC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 25, 253, 274
PspGI CCWGG 3 cut(s) 25, 253, 274
PspN4I GGNNCC 3 cut(s) 97, 115, 259
PspPI GGNCC 2 cut(s) 60, 113
PspPPI RGGWCCY 1 cut(s) 113
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 4 cut(s) 151, 221, 248, 259
RsaNI GTAC 4 cut(s) 150, 220, 247, 258
SatI GCNGC 2 cut(s) 177, 290
Sau3AI GATC 2 cut(s) 51, 304
Sau96I GGNCC 2 cut(s) 60, 113
ScrFI CCNGG 3 cut(s) 27, 255, 276
SduI GDGCHC 1 cut(s) 73
SetI ASST 2 cut(s) 196, 259
SexAI ACCWGGT 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 2 cut(s) 60, 113
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 1 cut(s) 290
SspDI GGCGCC 1 cut(s) 95
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 25, 253, 274
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 85, 128, 299
TaqI TCGA 1 cut(s) 87
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 1 cut(s) 326
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 2 cut(s) 77, 101
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 77, 101
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 60, 113
XmnI GAANNNNTTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.