Rorug07G0268900

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
25364536 .. 25365700
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0268900.1

Sequence Viewer

Length: 1077 bp
ATGGAGCAGATTGATAATGATGATTACCTACTCTCAACTATTCTTGATGGCAATGACACACGGGGTTCTAACTCCCATAGCAATAGAGCGCGGTCTTCCTCTGACTTAAGTCAGTTCGGTGTTTTCAGTAGTAATGGGATGGTCAAGGTAGATGAAGAGAGTGAGGAGCATAAGTTGATAAAGATTTTCTTTGATTTGGGTATGGGAACAGAAGCCAATGTTGTGGCTGTATACAAGAATTTGTGTTCTGAAGGAACGACGAGTCGAGCAAGATTGGAGAGGTTTCGGAGTTTCTCTAAGGCAGTGGCTCGAAAGCATGGGGGCAATGCCAATATTGTGCCTGCTTGGTATGGTAGTTCCAGGGATGAGATATGTGAGATTTTGTTGAATGGGTTTAGTCTTAGAGAACCTACATCTAATGATGAACCTTATGGTGTTGATACCATTCATTTGGCTCCTCTGAATTGTTCTTTTGATGGTGCTTTATGTTCAGTTGCTGATGACAGTGGGCTAAGGCACATACTACTTTGTAGCGTCATTTTGGGGAAGACAGAATTTGTGTCCCCAAATTCGAAGCAAGCTCTTCCCAGCTCCAACAAGCTTGATTGTGGTGTGGATGATCCTGTGAACCCGAGAAGATATATCATATGGAGTGATTTCATGAACTCTCACATCTGTCCTCTGTATGTTGTAAGCTTCAAGGCTCCTCCTCCTCCTCCTTGCTTAAGTCCCAAGTCTCCTGAAAAAATGAGTATCCCCAGCATCCCTAAACTTGCAAAGTCCTTACATCCTTCAAAAGTGGCTTCAATTGTTAAATGCATCAAGGAACTTCAAGGAAGTAAGATTAGGATGATGATCAGTTTTCCGGCCCATTGCTTAAAACCTCCAAGGATGAGTTTCCCTACTACAAAGCTACGACAGTTCTTAAATCATTCTAGAATGGCATTGAGTGTTAAATGCAGCAAGGAACTTCGAGCAAGTATGGTTAGCGCCGCACAGTCAATACAAAAACCGAGGAAGATCAGTTTTTCAGCTCATTGCTTAAAACTACGACCCTCAACCTCCCCAAGTTCTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

39.41

Weight (kDa)

9.09

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011935)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 91
AciI CCGC 2 cut(s) 91, 993
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 3 cut(s) 238, 554, 568
AcuI CTGAAG 1 cut(s) 270
AflII CTTAAG 2 cut(s) 106, 724
AgsI TTSAA 5 cut(s) 388, 700, 795, 807, 833
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 6 cut(s) 581, 591, 601, 696, 913, 1034
AluI AGCT 6 cut(s) 581, 591, 601, 696, 913, 1034
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 1 cut(s) 960
ApoI RAATTY 3 cut(s) 238, 554, 568
AspLEI GCGC 2 cut(s) 91, 992
AspS9I GGNCC 1 cut(s) 868
AsuII TTCGAA 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 87, 554
BbvI GCAGC 1 cut(s) 972
BccI CCATC 3 cut(s) 41, 133, 470
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 993
BfrI CTTAAG 2 cut(s) 106, 724
BfuI GTATCC 1 cut(s) 764
BisI GCNGC 2 cut(s) 961, 993
BlsI GCNGC 2 cut(s) 962, 994
Bme1390I CCNGG 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 2 cut(s) 456, 705
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 771, 828
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 2 cut(s) 87, 554
Bpu10I CCTNAGC 1 cut(s) 512
Bpu14I TTCGAA 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 360, 887, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse3DI GCAATG 4 cut(s) 58, 331, 871, 1036
Bse8I GATNNNNATC 1 cut(s) 854
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 360, 887, 1013
BseGI GGATG 7 cut(s) 144, 370, 622, 762, 787, 855, 897
BseJI GATNNNNATC 1 cut(s) 854
BseMI GCAATG 4 cut(s) 58, 331, 871, 1036
BseRI GAGGAG 6 cut(s) 179, 447, 696, 699, 702, 705
BseXI GCAGC 1 cut(s) 972
BseYI CCCAGC 2 cut(s) 587, 758
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 869
BsiHKCI CYCGRG 1 cut(s) 631
BsiSI CCGG 1 cut(s) 866
BslFI GGGAC 2 cut(s) 547, 714
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 2 cut(s) 547, 714
BsnI GGCC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 572
Bsp143I GATC 3 cut(s) 619, 855, 1020
BspACI CCGC 2 cut(s) 91, 993
BspANI GGCC 1 cut(s) 869
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 456, 705
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 572
BspTI CTTAAG 2 cut(s) 106, 724
BsrDI GCAATG 4 cut(s) 58, 331, 871, 1036
BssECI CCNNGG 3 cut(s) 360, 887, 1013
BssMI GATC 3 cut(s) 619, 855, 1020
BssNAI GTATAC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 887
Bst1107I GTATAC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 506, 921, 999
Bst6I CTCTTC 2 cut(s) 150, 588
BstAFI CTTAAG 2 cut(s) 106, 724
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 342, 579
BstDEI CTNAG 4 cut(s) 297, 401, 512, 1074
BstF5I GGATG 7 cut(s) 144, 370, 622, 762, 787, 855, 897
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 993
BstHHI GCGC 2 cut(s) 91, 992
BstKTI GATC 3 cut(s) 622, 858, 1023
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 3 cut(s) 619, 855, 1020
BstNI CCWGG 1 cut(s) 361
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 359
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 972
BstV2I GAAGAC 2 cut(s) 87, 554
BstXI CCANNNNNNTGG 2 cut(s) 223, 451
BstZ17I GTATAC 1 cut(s) 232
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 1 cut(s) 869
BtsCI GGATG 7 cut(s) 144, 370, 622, 762, 787, 855, 897
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 309, 511
Cac8I GCNNGC 2 cut(s) 342, 579
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 660
CfoI GCGC 2 cut(s) 91, 992
Cfr13I GGNCC 1 cut(s) 868
CseI GACGC 1 cut(s) 523
CviAII CATG 2 cut(s) 317, 661
DdeI CTNAG 4 cut(s) 297, 401, 512, 1074
DpnI GATC 3 cut(s) 621, 857, 1022
DpnII GATC 3 cut(s) 619, 855, 1020
Eam1104I CTCTTC 2 cut(s) 150, 588
EarI CTCTTC 2 cut(s) 150, 588
Eco130I CCWWGG 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 887
EcoT22I ATGCAT 1 cut(s) 821
ErhI CCWWGG 1 cut(s) 887
FaeI CATG 2 cut(s) 320, 664
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 2 cut(s) 547, 714
FatI CATG 2 cut(s) 316, 660
FauNDI CATATG 1 cut(s) 647
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 961, 993
FokI GGATG 7 cut(s) 151, 377, 629, 749, 774, 862, 904
Fsp4HI GCNGC 2 cut(s) 961, 993
FspBI CTAG 1 cut(s) 936
GlaI GCGC 2 cut(s) 90, 991
GluI GCNGC 2 cut(s) 961, 993
GsaI CCCAGC 2 cut(s) 591, 762
HaeII RGCGCY 1 cut(s) 993
HaeIII GGCC 1 cut(s) 869
HapII CCGG 1 cut(s) 866
HgaI GACGC 1 cut(s) 523
HhaI GCGC 2 cut(s) 91, 992
Hin1II CATG 2 cut(s) 320, 664
Hin6I GCGC 2 cut(s) 89, 990
HinP1I GCGC 2 cut(s) 89, 990
HindIII AAGCTT 2 cut(s) 599, 694
HinfI GANTC 1 cut(s) 262
HpaII CCGG 1 cut(s) 866
Hpy166II GTNNAC 2 cut(s) 232, 628
Hpy188I TCNGA 4 cut(s) 103, 250, 288, 462
Hpy188III TCNNGA 4 cut(s) 44, 661, 740, 936
Hpy8I GTNNAC 2 cut(s) 232, 628
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 245, 801
HpyCH4III ACNGT 3 cut(s) 506, 921, 999
HpyCH4V TGCA 3 cut(s) 776, 819, 960
HpyF3I CTNAG 4 cut(s) 297, 401, 512, 1074
Hsp92II CATG 2 cut(s) 320, 664
HspAI GCGC 2 cut(s) 89, 990
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 3 cut(s) 619, 855, 1020
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 5 cut(s) 4, 166, 460, 596, 709
LpnPI CCDG 8 cut(s) 346, 354, 373, 601, 636, 753, 772, 879
Lsp1109I GCAGC 1 cut(s) 972
LweI GCATC 2 cut(s) 771, 828
MaeI CTAG 1 cut(s) 936
MalI GATC 3 cut(s) 621, 857, 1022
MboI GATC 3 cut(s) 619, 855, 1020
MboII GAAGA 6 cut(s) 87, 167, 559, 575, 648, 1030
MfeI CAATTG 1 cut(s) 807
MluCI AATT 5 cut(s) 238, 463, 554, 568, 807
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 821
MseI TTAA 7 cut(s) 107, 725, 813, 878, 926, 954, 1043
MspCI CTTAAG 2 cut(s) 106, 724
MspI CCGG 1 cut(s) 866
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 91
NdeI CATATG 1 cut(s) 647
NdeII GATC 3 cut(s) 619, 855, 1020
NlaIII CATG 2 cut(s) 320, 664
NlaIV GGNNCC 2 cut(s) 456, 705
NsiI ATGCAT 1 cut(s) 821
NspV TTCGAA 1 cut(s) 572
PagI TCATGA 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 588
PkrI GCNGC 2 cut(s) 962, 994
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 2 cut(s) 587, 758
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 456, 705
PspPI GGNCC 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 7 cut(s) 107, 725, 813, 878, 926, 954, 1043
SatI GCNGC 2 cut(s) 961, 993
Sau3AI GATC 3 cut(s) 619, 855, 1020
Sau96I GGNCC 1 cut(s) 868
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 361
SfaNI GCATC 2 cut(s) 771, 828
SfuI TTCGAA 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 106, 724
SmoI CTYRAG 2 cut(s) 106, 724
Sse9I AATT 5 cut(s) 238, 463, 554, 568, 807
SsiI CCGC 2 cut(s) 91, 993
SspI AATATT 1 cut(s) 334
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 3 cut(s) 506, 921, 999
TaqI TCGA 4 cut(s) 265, 310, 572, 973
TasI AATT 5 cut(s) 238, 463, 554, 568, 807
TauI GCSGC 1 cut(s) 995
Tru1I TTAA 7 cut(s) 107, 725, 813, 878, 926, 954, 1043
Tru9I TTAA 7 cut(s) 107, 725, 813, 878, 926, 954, 1043
TscAI CASTG 2 cut(s) 309, 511
TseI GCWGC 1 cut(s) 960
TspDTI ATGAA 5 cut(s) 168, 437, 438, 649, 677
TspRI CASTG 2 cut(s) 309, 511
Vha464I CTTAAG 2 cut(s) 106, 724
XapI RAATTY 3 cut(s) 238, 554, 568
XbaI TCTAGA 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 936
Zsp2I ATGCAT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.