AT4G10040

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6276948 .. 6278622
1675 bp
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UTR
Exon/CDS
Intron
AT4G10040.1

Sequence Viewer

Length: 339 bp
ATGGCGTCGTTCGACGAAGCACCTCCCGGAAACCCCAAAGCCGGTGAAAAGATCTTCAGAACCAAGTGCGCTCAGTGTCACACCGTCGAGAAAGGTGCCGGTCACAAACAAGGACCGAATTTGAATGGATTGTTTGGAAGACAATCTGGAACAACTCCAGGATATTCTTACTCTGCTGCTAACAAAAGCATGGCTGTGAATTGGGAGGAGAAGACTCTTTACGATTACTTGTTGAATCCTAAGAAGTACATCCCTGGAACAAAAATGGTGTTTCCTGGACTGAAAAAACCGCAAGATCGTGCCGATCTCATCGCTTATTTGAAGGAAGGTACTGCTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

9.37

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 11 - 107 5e-06 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_C PF00034 13 - 109 5.2e-12 Cytochrome c
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011935)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 248, 331
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 124, 235, 322
AjnI CCWGG 3 cut(s) 157, 253, 274
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 95
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 2 cut(s) 145, 218
BbvI GCAGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 3 cut(s) 159, 255, 276
BcnI CCSGG 1 cut(s) 27
BglII AGATCT 1 cut(s) 51
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 4 cut(s) 27, 159, 255, 276
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 4 cut(s) 27, 159, 255, 276
BpiI GAAGAC 2 cut(s) 145, 218
BpmI CTGGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 2 cut(s) 41, 98
BseBI CCWGG 3 cut(s) 159, 255, 276
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 3 cut(s) 27, 42, 99
BslI CCNNNNNNNGG 1 cut(s) 41
Bsp143I GATC 3 cut(s) 51, 295, 304
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrFI RCCGGY 2 cut(s) 41, 98
BssAI RCCGGY 2 cut(s) 41, 98
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 51, 295, 304
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 159, 255, 276
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 72, 240, 336
BstF5I GGATG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 54, 298, 307
BstMBI GATC 3 cut(s) 51, 295, 304
BstNI CCWGG 3 cut(s) 159, 255, 276
BstSCI CCNGG 4 cut(s) 25, 157, 253, 274
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 2 cut(s) 145, 218
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 41, 98
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 247, 330
CviAII CATG 1 cut(s) 190
CviJI RGCY 2 cut(s) 41, 194
CviKI_1 RGCY 2 cut(s) 41, 194
CviQI GTAC 2 cut(s) 247, 330
DdeI CTNAG 3 cut(s) 72, 240, 336
DpnI GATC 3 cut(s) 53, 297, 306
DpnII GATC 3 cut(s) 51, 295, 304
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 40
EcoRII CCWGG 3 cut(s) 157, 253, 274
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 3 cut(s) 27, 42, 99
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 214, 235
HpaII CCGG 3 cut(s) 27, 42, 99
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 88, 147
Hpy99I CGWCG 3 cut(s) 10, 17, 89
HpyAV CCTTC 2 cut(s) 316, 320
HpyCH4III ACNGT 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 72, 240, 336
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 51, 295, 304
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 77, 101
MalI GATC 3 cut(s) 53, 297, 306
MboI GATC 3 cut(s) 51, 295, 304
MboII GAAGA 3 cut(s) 46, 150, 223
MflI RGATCY 1 cut(s) 51
MluCI AATT 2 cut(s) 118, 199
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 2 cut(s) 33, 199
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 3 cut(s) 27, 42, 99
MspR9I CCNGG 4 cut(s) 27, 159, 255, 276
MvaI CCWGG 3 cut(s) 159, 255, 276
NciI CCSGG 1 cut(s) 27
NdeII GATC 3 cut(s) 51, 295, 304
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 77, 101
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 3 cut(s) 25, 157, 274
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 3 cut(s) 157, 253, 274
PspGI CCWGG 3 cut(s) 157, 253, 274
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 248, 331
RsaNI GTAC 2 cut(s) 247, 330
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 51, 295, 304
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 27, 159, 255, 276
SetI ASST 3 cut(s) 25, 97, 331
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 118, 199
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 4 cut(s) 25, 157, 253, 274
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 12, 87
TaqII GACCGA 1 cut(s) 130
TasI AATT 2 cut(s) 118, 199
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 2 cut(s) 77, 101
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 77, 101
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.