Rroxscaffold_3G00228830

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011935
Physical Location & Seq
Reverse (-)
13212622 .. 13214574
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228830.1

Sequence Viewer

Length: 342 bp
ATGGCGTCGTTCGCTGAAGCTCCACCGGGAGATGCCAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGACAAAGGCGCCGGCCACAAGCAGGGACCCAATTTGAATGGGCTGTTTGGGAGGCAGTCTGGAACAACCCCCGGATACTCCTATTCTGCTGCTAACAAGAACATGGCTGTTAATTGGGAGGAGAAGACATTGTATGACTATTTGCTTAATCCCAAGAAGTACATTCCTGGAACCAAGATGGTATTCCCTGGATTGAAGAAGCCAAAGGAACGTGCTGACCTCATTGCCTATTTGAAGGAATCAACTGCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005773 GO:0005774 GO:0005829 GO:0006091 GO:0006119 GO:0006122 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0010336 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0031090 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042592 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0048878 GO:0050801 GO:0055081 GO:0055086 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072521 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 ko01524 ko02020 ko04115 ko04210 ko04214 ko04215 ko04932 ko05010 ko05012 ko05014 ko05016 ko05134 ko05145 ko05152 ko05161 ko05164 ko05167 ko05168 ko05200 ko05210 ko05222 ko05416 map00920 map01100 map01120 map01524 map02020 map04115 map04210 map04214 map04215 map04932 map05010 map05012 map05014 map05016 map05134 map05145 map05152 map05161 map05164 map05167 map05168 map05200 map05210 map05222 map05416
Pfam Domains
Protein Families
Cytochrom_C

Protein Analysis

113

Amino Acids

12.29

Weight (kDa)

9.44

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 11 - 107 4e-06 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_C PF00034 12 - 109 3.6e-12 Cytochrome c
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22840 AT1G22840 AT4G10040
fragaria_vesca FvH4_5g33350
malus_domestica MD08G1213100.v1.1 MD15G1395600.v1.1
prunus_persica Prupe.1G544400_v2.0.a1 Prupe.1G544400_v2.0.a1
pyrus_communis pycom08g18300
rosa_chinensis RchiOBHm_Chr7g0232081
rosa_laevigata RLG00000001393
rosa_multiflora Rmu_sc0004618.1_g000007
rosa_roxburghii Rroxscaffold_3G00228830
rosa_rugosa Rorug07G0268900
rosa_samantha Rh7AG423500 Rh7BG397500 Rh7CG443800 Rh7DG415600
rosa_wichuraiana Rw7G035020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 5, 96
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 4 cut(s) 58, 124, 283, 322
AjnI CCWGG 2 cut(s) 253, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 2 cut(s) 39, 100
ApeKI GCWGC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 71, 98
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 2 cut(s) 27, 159
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 255, 276
BciVI GTATCC 1 cut(s) 155
BcnI CCSGG 2 cut(s) 27, 159
BfoI RGCGCY 1 cut(s) 99
BfuI GTATCC 1 cut(s) 155
BglII AGATCT 1 cut(s) 51
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 4 cut(s) 27, 159, 255, 276
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 4 cut(s) 97, 114, 115, 259
BmrFI CCNGG 4 cut(s) 27, 159, 255, 276
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 27, 159
BsaHI GRCGYC 2 cut(s) 5, 96
BsaJI CCNNGG 3 cut(s) 36, 157, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 2 cut(s) 255, 276
BseDI CCNNGG 3 cut(s) 36, 157, 274
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 2 cut(s) 41, 102
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 4 cut(s) 26, 42, 99, 159
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 41, 102
Bsp143I GATC 1 cut(s) 51
BspANI GGCC 2 cut(s) 41, 102
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 4 cut(s) 97, 114, 115, 259
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 36, 157, 274
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 2 cut(s) 5, 96
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 255, 276
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 2 cut(s) 5, 96
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 71, 98
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 11, 75
BstNI CCWGG 2 cut(s) 255, 276
BstSCI CCNGG 4 cut(s) 25, 157, 253, 274
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 41, 102
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 71, 98
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 190
CviJI RGCY 6 cut(s) 20, 41, 102, 130, 194, 289
CviKI_1 RGCY 6 cut(s) 20, 41, 102, 130, 194, 289
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 72
DinI GGCGCC 1 cut(s) 97
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 253, 274
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 222
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 2 cut(s) 70, 97
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 41, 102
HapII CCGG 4 cut(s) 26, 42, 99, 159
HhaI GCGC 2 cut(s) 71, 98
Hin1I GRCGYC 2 cut(s) 5, 96
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 69, 96
HinP1I GCGC 2 cut(s) 69, 96
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 326
HpaII CCGG 4 cut(s) 26, 42, 99, 159
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 58, 147
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 10, 89
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 75
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 2 cut(s) 5, 96
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 69, 96
KasI GGCGCC 1 cut(s) 95
KflI GGGWCCC 1 cut(s) 113
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 298
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 4 cut(s) 46, 61, 223, 295
MflI RGATCY 1 cut(s) 51
MluCI AATT 2 cut(s) 118, 199
Mly113I GGCGCC 1 cut(s) 96
MnlI CCTC 3 cut(s) 132, 199, 317
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 3 cut(s) 198, 234, 340
MspI CCGG 4 cut(s) 26, 42, 99, 159
MspR9I CCNGG 4 cut(s) 27, 159, 255, 276
MvaI CCWGG 2 cut(s) 255, 276
MwoI GCNNNNNNNGC 2 cut(s) 11, 75
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 2 cut(s) 27, 159
NdeII GATC 1 cut(s) 51
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 4 cut(s) 97, 114, 115, 259
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 253, 274
PspGI CCWGG 2 cut(s) 253, 274
PspN4I GGNNCC 4 cut(s) 97, 114, 115, 259
PspPI GGNCC 1 cut(s) 113
PspPPI RGGWCCY 1 cut(s) 113
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 198, 234, 340
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 4 cut(s) 27, 159, 255, 276
SetI ASST 3 cut(s) 22, 301, 309
SfaNI GCATC 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 118, 199
SspDI GGCGCC 1 cut(s) 95
StyD4I CCNGG 4 cut(s) 25, 157, 253, 274
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 118, 199
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 3 cut(s) 198, 234, 340
Tru9I TTAA 3 cut(s) 198, 234, 340
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 176
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.