AT1G24490

ALBINO3-like protein 1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010121
Physical Location & Seq
Forward (+)
8682195 .. 8685271
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24490.1

Sequence Viewer

Length: 1500 bp
ATGTCTTCAACAATATCCCTAAAGCCGACGCACCTTATCCTCTCCTCTTTCTCCACAGGCAAAGTCCTCCAATTCCGCCGCTCCCGTTTCAGCCACACACCGTCGTCGTCGTCGTCTCGTTATCGGACTCTCGTAGCTCAACTCGGGTTCAGACCAGATTCTTTTGATTTCATCAAGGACCATGCCGAGAATCTGCTGTACACGATCGCTGATGCCGCCGTTTCGTCCTCTGAAACCTTTGAATCTGTCGCCGGCACTACTACCAAAACGACCCAGAGCAATGATTGGTTCTCTGGTATTGCTAATTACATGGAAACTATTCTCAAGGTTTTGAAAGATGGGTTATCAACTGTACATGTTCCTTATTCCTATGGTTTCGCTATCATTCTATTGACTGTGCTTGTTAAGGCTGCTACGTTCCCATTGACGAAAAAACAGGTTGAATCTGCCATGGCTATGAAATCTTTGACGCCTCAAATAAAGGCTATTCAGGAACGGTATGCTGGTGATCAGGAGAAAATTCAGCTTGAAACTGCTAGATTGTATAAGCTTGCTGGAATAAATCCCCTTGCAGGCTGCCTCCCCACACTAGCCACGATACCTGTCTGGATTGGGCTATATAGAGCCCTCTCAAATGTTGCAGATGAGGGGCTCTTAACGGAAGGTTTTTTCTGGATACCTTCTCTTGCTGGTCCAACGACTGTTGCTGCAAGACAGAATGGCAGTGGAATCTCATGGCTGTTCCCTTTCATTGAGGGACACCCACCTCTCGGATGGCCAGACACATTAGCATATCTTGTCTTACCTCTATTGCTCGTCTTCTCTCAATACCTCTCCATTCAAATTATGCAGTCCTCGCAGAGTAATGATCCAGCCATGAAGAGCTCACAAGCAGTGACTAAGCTTCTTCCACTGATGATTGGCTATTTTGCATTATCAGTTCCTTCTGGTTTAAGTCTTTATTGGCTGACCAACAACATTTTGAGCACGGCACAGCAAGTATGGCTTCAAAAATATGGTGGTGCTAAGAATCCAGTGGAGAAATTCACTAATTTGGTCACTAAGGAAGATAAAACACAACAAATTGAGAAGTCTTTTTCAGAACCACTAGTTCAGAAGTCTGTTTCAGAACTGAAAATACCAAGAGAGAAGGGTGGTGAAAAGGTGACCCCAGAATGCCCCAAACCTGGTGAAAGGTTTAGGCTGCTGAAAGAGCAAGAAGCAAAGAGACGTCGAGAAAAAGAAGAGAGGCAGAAAGCTGAAGCAGCTCTATCTAATCAAAATACAGACAAAGCACATGAACAAGATGAAAAATCTGATACAGCCATTGTCGCTGAAGATGATAAAAAAACAGAACTTTCTGCTGTGGATGAAACATCCGATGGCACAGTAGCTGTGAATGGGAAGCCATCCATTCAAAAGGACGAGACTACGAATGGGACATTCGGCATTGGCCATGATACAGAACAACAGCATTCTCATGAAACAGAGAAGAGGTAA

Protein Analysis

499

Amino Acids

55.19

Weight (kDa)

7.14

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 124 - 338 4e-51 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24490 AT1G24490
fragaria_vesca FvH4_4g25090 FvH4_4g25090 FvH4_4g25090
malus_domestica MD13G1106600.v1.1 MD16G1106700.v1.1
prunus_persica Prupe.1G239700_v2.0.a1
pyrus_communis pycom13g09240 pycom16g09090
rosa_chinensis RchiOBHm_Chr4g0432271
rosa_laevigata RLG00000006858
rosa_multiflora Rmu_sc0001084.1_g000048
rosa_roxburghii Rroxscaffold_5G00373720
rosa_rugosa Rorug04G0255800 Rorug04G0255900
rosa_samantha Rh4AG312900 Rh4BG320500 Rh4CG335700 Rh4DG315800
rosa_wichuraiana Rw4G027200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1234
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 3 cut(s) 76, 79, 216
AclWI GGATC 1 cut(s) 863
AcoI YGGCCR 2 cut(s) 776, 1453
AcsI RAATTY 2 cut(s) 519, 1043
AcuI CTGAAG 2 cut(s) 1281, 1356
AcyI GRCGYC 2 cut(s) 470, 1231
AfaI GTAC 2 cut(s) 200, 354
AfiI CCNNNNNNNGG 3 cut(s) 572, 770, 1187
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 8 cut(s) 9, 242, 334, 443, 530, 842, 1010, 1418
AhlI ACTAGT 1 cut(s) 1108
AjnI CCWGG 1 cut(s) 1186
AluBI AGCT 8 cut(s) 137, 526, 550, 885, 904, 1259, 1268, 1394
AluI AGCT 8 cut(s) 137, 526, 550, 885, 904, 1259, 1268, 1394
Alw21I GWGCWC 2 cut(s) 887, 989
Alw26I GTCTC 3 cut(s) 120, 1222, 1421
AlwI GGATC 1 cut(s) 863
AlwNI CAGNNNCTG 1 cut(s) 1394
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 776, 1453
ApeKI GCWGC 5 cut(s) 410, 576, 707, 1204, 1265
ApoI RAATTY 2 cut(s) 519, 1043
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 178, 692
AsuHPI GGTGA 4 cut(s) 518, 1169, 1177, 1202
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 2 cut(s) 178, 692
BalI TGGCCA 2 cut(s) 778, 1455
BanII GRGCYC 3 cut(s) 628, 654, 887
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 2 cut(s) 887, 989
BbvI GCAGC 5 cut(s) 397, 563, 694, 1191, 1277
BccI CCATC 4 cut(s) 332, 768, 1376, 1417
BceAI ACGGC 2 cut(s) 203, 1005
BciT130I CCWGG 1 cut(s) 1188
BciVI GTATCC 1 cut(s) 669
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 120, 1222, 1421
BcuI ACTAGT 1 cut(s) 1108
BfaI CTAG 3 cut(s) 537, 590, 1109
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 7 cut(s) 79, 216, 411, 577, 708, 1205, 1266
BlsI GCNGC 7 cut(s) 80, 217, 412, 578, 709, 1206, 1267
Bme1390I CCNGG 1 cut(s) 1188
Bme18I GGWCC 2 cut(s) 178, 692
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 178, 692
BmrFI CCNGG 1 cut(s) 1188
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 811
BpuEI CTTGAG 1 cut(s) 308
BsaHI GRCGYC 2 cut(s) 470, 1231
BsaJI CCNNGG 1 cut(s) 450
Bsc4I CCNNNNNNNGG 3 cut(s) 572, 770, 1187
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 1034
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 4 cut(s) 779, 1375, 1376, 1409
BseLI CCNNNNNNNGG 3 cut(s) 572, 770, 1187
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 1034
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 5 cut(s) 397, 563, 694, 1191, 1277
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 778, 1455
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 887, 989
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 771, 1453
BslI CCNNNNNNNGG 3 cut(s) 572, 770, 1187
BsmAI GTCTC 3 cut(s) 120, 1222, 1421
BsmBI CGTCTC 2 cut(s) 120, 1222
BsmFI GGGAC 2 cut(s) 771, 1453
BsmI GAATGC 2 cut(s) 1181, 1474
BsnI GGCC 2 cut(s) 778, 1455
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 628, 654, 887, 989
Bsp1407I TGTACA 2 cut(s) 198, 352
Bsp143I GATC 3 cut(s) 204, 508, 868
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 3 cut(s) 76, 79, 216
BspANI GGCC 2 cut(s) 778, 1455
BspHI TCATGA 1 cut(s) 1480
BspPI GGATC 1 cut(s) 863
BspQI GCTCTTC 1 cut(s) 875
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 251
BsrGI TGTACA 2 cut(s) 198, 352
BsrI ACTGG 1 cut(s) 1034
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 3 cut(s) 204, 508, 868
BssNI GRCGYC 2 cut(s) 470, 1231
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 1188
Bst4CI ACNGT 6 cut(s) 102, 352, 397, 498, 703, 1390
Bst6I CTCTTC 3 cut(s) 875, 1239, 1487
BstACI GRCGYC 2 cut(s) 470, 1231
BstAUI TGTACA 2 cut(s) 198, 352
BstC8I GCNNGC 3 cut(s) 253, 552, 574
BstDEI CTNAG 3 cut(s) 900, 1026, 1062
BstDSI CCRYGG 1 cut(s) 450
BstEII GGTNACC 1 cut(s) 1165
BstF5I GGATG 4 cut(s) 779, 1375, 1376, 1409
BstKTI GATC 3 cut(s) 207, 511, 871
BstMAI GTCTC 3 cut(s) 120, 1222, 1421
BstMBI GATC 3 cut(s) 204, 508, 868
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 215, 856, 1003, 1213, 1265, 1331
BstNI CCWGG 1 cut(s) 1188
BstNSI RCATGY 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 1165
BstSCI CCNGG 1 cut(s) 1186
BstV1I GCAGC 5 cut(s) 397, 563, 694, 1191, 1277
BstV2I GAAGAC 1 cut(s) 811
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 778, 1455
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 4 cut(s) 779, 1375, 1376, 1409
BtsI GCAGTG 2 cut(s) 730, 900
BtsIMutI CAGTG 4 cut(s) 730, 900, 911, 1041
Cac8I GCNNGC 3 cut(s) 253, 552, 574
CaiI CAGNNNCTG 1 cut(s) 1394
CciI TCATGA 1 cut(s) 1480
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 178, 692
CseI GACGC 2 cut(s) 37, 478
CsiI ACCWGGT 1 cut(s) 1186
Csp6I GTAC 2 cut(s) 199, 353
CviAII CATG 9 cut(s) 182, 310, 356, 451, 735, 877, 1298, 1457, 1481
CviQI GTAC 2 cut(s) 199, 353
DdeI CTNAG 3 cut(s) 900, 1026, 1062
DpnI GATC 3 cut(s) 206, 510, 870
DpnII GATC 3 cut(s) 204, 508, 868
EaeI YGGCCR 2 cut(s) 776, 1453
Eam1104I CTCTTC 3 cut(s) 875, 1239, 1487
EarI CTCTTC 3 cut(s) 875, 1239, 1487
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 3 cut(s) 628, 654, 887
Eco47I GGWCC 2 cut(s) 178, 692
Eco53kI GAGCTC 1 cut(s) 885
Eco57I CTGAAG 2 cut(s) 1281, 1356
Eco88I CYCGRG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 1165
EcoICRI GAGCTC 1 cut(s) 885
EcoO65I GGTNACC 1 cut(s) 1165
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 3 cut(s) 628, 654, 887
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 2 cut(s) 120, 1222
FaeI CATG 9 cut(s) 185, 313, 359, 454, 738, 880, 1301, 1460, 1484
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 771, 1453
FatI CATG 9 cut(s) 181, 309, 355, 450, 734, 876, 1297, 1456, 1480
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 7 cut(s) 79, 216, 411, 577, 708, 1205, 1266
FokI GGATG 4 cut(s) 786, 1363, 1382, 1396
FriOI GRGCYC 3 cut(s) 628, 654, 887
Fsp4HI GCNGC 7 cut(s) 79, 216, 411, 577, 708, 1205, 1266
FspBI CTAG 3 cut(s) 537, 590, 1109
GluI GCNGC 7 cut(s) 79, 216, 411, 577, 708, 1205, 1266
HaeIII GGCC 2 cut(s) 778, 1455
HapII CCGG 1 cut(s) 252
HgaI GACGC 2 cut(s) 37, 478
Hin1I GRCGYC 2 cut(s) 470, 1231
Hin1II CATG 9 cut(s) 185, 313, 359, 454, 738, 880, 1301, 1460, 1484
HindIII AAGCTT 2 cut(s) 548, 902
HinfI GANTC 7 cut(s) 127, 158, 190, 242, 443, 729, 1030
HpaII CCGG 1 cut(s) 252
HphI GGTGA 4 cut(s) 518, 1169, 1177, 1202
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 9 cut(s) 126, 152, 232, 773, 1102, 1116, 1129, 1318, 1381
Hpy188III TCNNGA 6 cut(s) 491, 512, 607, 673, 1235, 1481
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 6 cut(s) 31, 106, 109, 112, 115, 1236
HpyAV CCTTC 4 cut(s) 656, 690, 954, 1144
HpyCH4III ACNGT 6 cut(s) 102, 352, 397, 498, 703, 1390
HpyCH4IV ACGT 2 cut(s) 416, 1231
HpyCH4V TGCA 5 cut(s) 572, 641, 710, 850, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 856, 1003, 1213, 1265, 1331
HpyF3I CTNAG 3 cut(s) 900, 1026, 1062
HpySE526I ACGT 2 cut(s) 416, 1231
Hsp92I GRCGYC 2 cut(s) 470, 1231
Hsp92II CATG 9 cut(s) 185, 313, 359, 454, 738, 880, 1301, 1460, 1484
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 3 cut(s) 204, 508, 868
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 5 cut(s) 397, 563, 694, 1191, 1277
LweI GCATC 1 cut(s) 202
MabI ACCWGGT 1 cut(s) 1186
MaeI CTAG 3 cut(s) 537, 590, 1109
MaeII ACGT 2 cut(s) 416, 1231
MaeIII GTNAC 3 cut(s) 895, 1057, 1165
MalI GATC 3 cut(s) 206, 510, 870
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 204, 508, 868
MboII GAAGA 6 cut(s) 811, 892, 899, 1079, 1256, 1349
MhlI GDGCHC 4 cut(s) 628, 654, 887, 989
MlsI TGGCCA 2 cut(s) 778, 1455
MluCI AATT 7 cut(s) 71, 304, 519, 843, 1043, 1051, 1083
MluNI TGGCCA 2 cut(s) 778, 1455
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 719
Mox20I TGGCCA 2 cut(s) 778, 1455
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 2 cut(s) 778, 1455
MseI TTAA 3 cut(s) 405, 656, 953
MslI CAYNNNNRTG 2 cut(s) 455, 1479
Msp20I TGGCCA 2 cut(s) 778, 1455
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 1188
Mva1269I GAATGC 2 cut(s) 1181, 1474
MvaI CCWGG 1 cut(s) 1188
MwoI GCNNNNNNNGC 6 cut(s) 215, 856, 1003, 1213, 1265, 1331
NaeI GCCGGC 1 cut(s) 253
NcoI CCATGG 1 cut(s) 450
NdeII GATC 3 cut(s) 204, 508, 868
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 9 cut(s) 185, 313, 359, 454, 738, 880, 1301, 1460, 1484
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 3 cut(s) 895, 1057, 1165
NspI RCATGY 1 cut(s) 359
PagI TCATGA 1 cut(s) 1480
PciI ACATGT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 875
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 1181, 1474
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 6 cut(s) 158, 190, 242, 443, 729, 1030
PkrI GCNGC 7 cut(s) 80, 217, 412, 578, 709, 1206, 1267
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PscI ACATGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 887
Psp6I CCWGG 1 cut(s) 1186
PspEI GGTNACC 1 cut(s) 1165
PspGI CCWGG 1 cut(s) 1186
PspPI GGNCC 2 cut(s) 178, 692
PsrI GAACNNNNNNTAC 2 cut(s) 1122, 1154
PstNI CAGNNNCTG 1 cut(s) 1394
PvuI CGATCG 1 cut(s) 207
RsaI GTAC 2 cut(s) 200, 354
RsaNI GTAC 2 cut(s) 199, 353
RseI CAYNNNNRTG 2 cut(s) 455, 1479
SacI GAGCTC 1 cut(s) 887
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 3 cut(s) 405, 656, 953
SatI GCNGC 7 cut(s) 79, 216, 411, 577, 708, 1205, 1266
Sau3AI GATC 3 cut(s) 204, 508, 868
Sau96I GGNCC 2 cut(s) 178, 692
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 1188
SduI GDGCHC 4 cut(s) 628, 654, 887, 989
SexAI ACCWGGT 1 cut(s) 1186
SfaNI GCATC 1 cut(s) 202
SinI GGWCC 2 cut(s) 178, 692
SmiMI CAYNNNNRTG 2 cut(s) 455, 1479
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SpeI ACTAGT 1 cut(s) 1108
Sse9I AATT 7 cut(s) 71, 304, 519, 843, 1043, 1051, 1083
SsiI CCGC 3 cut(s) 76, 79, 216
SspMI CTAG 3 cut(s) 537, 590, 1109
SstI GAGCTC 1 cut(s) 887
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 6 cut(s) 102, 352, 397, 498, 703, 1390
TaiI ACGT 2 cut(s) 419, 1234
TaqI TCGA 1 cut(s) 1234
TasI AATT 7 cut(s) 71, 304, 519, 843, 1043, 1051, 1083
TatI WGTACW 2 cut(s) 198, 352
TauI GCSGC 2 cut(s) 81, 218
TfiI GAWTC 6 cut(s) 158, 190, 242, 443, 729, 1030
Tru1I TTAA 3 cut(s) 405, 656, 953
Tru9I TTAA 3 cut(s) 405, 656, 953
TscAI CASTG 4 cut(s) 730, 900, 918, 1041
TseFI GTSAC 3 cut(s) 895, 1057, 1165
TseI GCWGC 5 cut(s) 410, 576, 707, 1204, 1265
Tsp45I GTSAC 3 cut(s) 895, 1057, 1165
TspDTI ATGAA 8 cut(s) 160, 473, 739, 893, 1314, 1323, 1386, 1497
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 4 cut(s) 730, 900, 918, 1041
VpaK11BI GGWCC 2 cut(s) 178, 692
XapI RAATTY 2 cut(s) 519, 1043
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 3 cut(s) 537, 590, 1109
ZraI GACGTC 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.