Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010121

Physical Location & Seq

Genomic Coordinates Forward (+)

42867234 .. 42869546

Gene Structure 2313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTTGTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCAGTTCATATTCATCCAAATCGTTATTAGTTGGTAAAATAGATAAACCCCAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTTGCTCTCTCTTTGTCCAAGAAGAGGGTACACCTCAAATCCAGAGAGAAACCAGATTCGGTTATTAAGCTTCTGAAACACTATGGATTCAATGATACCGACATATCCCAACTTGTTAAGAAATTCCCAGAAGTGCTTGGGGTTAAACCTGAGAAGACCCTTTTGCCCAAACTAGAGTTTTTCAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCGGGCTCTTTGCAGCAACCCAAGTATTTTGAAACGAAATGTAGATAGAAATCTCAGGCCGTGTTATGATATCATCAAAAGTATACTTGTTTCCGACTTAGAGGTTGTTGATTTCTTTAAGAATTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCAGAATGTTTCAGTTCTGAGAAAACTTAAGGTGCCAGAGTCTTCAATCTCTTACTATGCGACGTGTCAGCCCTTTGTAATGTCCCTTGAAAAAGAGAAGTTTCATGAAGCTGTCAAGAGGGTCATGAGTTTGGGATTCCACCCTTCGAATGCAACGACATTCATGAAAGCACTATTTGTGATCTCTATAACTGATTCATCAAAATGGGCAGAAAGGATGGATTTCTATAAAAAGTGTGGTTGGAGTGAAGATGACTTTTTGGCGGCATTTAGAAAGAATCCCTTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACCAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTATAGTTTGGAGAAATGGATAATACCTAGGTGTTCAGTTATTAGAGTTCTCCTATTGAAGGGTTTAATAACAAGGGGAGAATTCAATTTCAACACTTTGTTGGGCCTCAATAAGAAGAACTTCTTGAAGAGGTTTGTGGTGCAATATCAAGAGCAAGTACCTGAATTACTCAGCATCTTTGAAGGGAAAATGGGTCTTGCAGAACTGGGATTAGGATTTGAGGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051641 GO:0055035 GO:0070727 GO:0071840 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

407

Amino Acids

46.18

Weight (kDa)

9.3

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	95 - 247	3.9e-19	mTERF
mTERF	PF02536	224 - 373	7.6e-16	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24490 AT1G24490
fragaria_vesca	FvH4_4g25090 FvH4_4g25090 FvH4_4g25090
malus_domestica	MD13G1106600.v1.1 MD16G1106700.v1.1
prunus_persica	Prupe.1G239700_v2.0.a1
pyrus_communis	pycom13g09240 pycom16g09090
rosa_chinensis	RchiOBHm_Chr4g0432271
rosa_laevigata	RLG00000006858
rosa_multiflora	Rmu_sc0001084.1_g000048
rosa_roxburghii	Rroxscaffold_5G00373720
rosa_rugosa	Rorug04G0255800 Rorug04G0255900
rosa_samantha	Rh4AG312900 Rh4BG320500 Rh4CG335700 Rh4DG315800
rosa_wichuraiana	Rw4G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	2 cut(s)	88, 863
AcsI	RAATTY	3 cut(s)	341, 556, 1073
AfaI	GTAC	2 cut(s)	249, 1152
AfiI	CCNNNNNNNGG	2 cut(s)	243, 1051
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	9 cut(s)	310, 466, 645, 689, 1051, 1078, 1084, 1120, 1175
AjiI	CACGTC	1 cut(s)	663
AluBI	AGCT	3 cut(s)	289, 568, 710
AluI	AGCT	3 cut(s)	289, 568, 710
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	3 cut(s)	412, 491, 1096
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	3 cut(s)	341, 556, 1073
Asp700I	GAANNNNTTC	2 cut(s)	881, 1112
AspA2I	CCTAGG	1 cut(s)	1019
AspS9I	GGNCC	1 cut(s)	1096
AsuHPI	GGTGA	1 cut(s)	204
AsuII	TTCGAA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	435
AvrII	CCTAGG	1 cut(s)	1019
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	442
BbsI	GAAGAC	2 cut(s)	380, 633
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	161, 811
BceAI	ACGGC	1 cut(s)	478
BfaI	CTAG	3 cut(s)	392, 915, 1020
BfmI	CTRYAG	1 cut(s)	960
BfrI	CTTAAG	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	448, 864
BlnI	CCTAGG	1 cut(s)	1019
BlsI	GCNGC	2 cut(s)	449, 865
BmeT110I	CYCGRG	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	1096
BmiI	GGNNCC	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	1208
BmsI	GCATC	2 cut(s)	104, 1176
BmuI	ACTGGG	1 cut(s)	1208
BpiI	GAAGAC	2 cut(s)	380, 633
Bpu14I	TTCGAA	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	1019
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 1051
Bse1I	ACTGG	1 cut(s)	1203
Bse3DI	GCAATG	3 cut(s)	79, 429, 594
Bse8I	GATNNNNATC	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	1019
BseGI	GGATG	2 cut(s)	119, 822
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	243, 1051
BseMI	GCAATG	3 cut(s)	79, 429, 594
BseMII	CTCAG	6 cut(s)	360, 432, 502, 608, 614, 1177
BseNI	ACTGG	1 cut(s)	1203
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	3 cut(s)	414, 493, 1098
BshNI	GGYRCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	243, 1051
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	414, 493, 1098
BsoBI	CYCGRG	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	780
BspACI	CCGC	2 cut(s)	88, 863
BspANI	GGCC	3 cut(s)	414, 493, 1098
BspCNI	CTCAG	6 cut(s)	361, 431, 501, 609, 613, 1176
BspHI	TCATGA	3 cut(s)	703, 723, 762
BspLI	GGNNCC	1 cut(s)	633
BspMAI	CTGCAG	1 cut(s)	964
BspT104I	TTCGAA	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	3 cut(s)	79, 429, 594
BsrI	ACTGG	1 cut(s)	1203
BssECI	CCNNGG	1 cut(s)	1019
BssMI	GATC	1 cut(s)	780
BssNAI	GTATAC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	1019
Bst1107I	GTATAC	1 cut(s)	518
Bst4CI	ACNGT	3 cut(s)	181, 577, 985
Bst6I	CTCTTC	2 cut(s)	236, 1115
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	960
BstDEI	CTNAG	7 cut(s)	369, 418, 488, 532, 600, 617, 1163
BstENI	CCTNNNNNAGG	1 cut(s)	1049
BstF5I	GGATG	2 cut(s)	119, 822
BstKTI	GATC	1 cut(s)	783
BstMBI	GATC	1 cut(s)	780
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
BstSFI	CTRYAG	1 cut(s)	960
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	2 cut(s)	380, 633
BstZ17I	GTATAC	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	414, 493, 1098
BtrI	CACGTC	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	119, 822
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	960
CciI	TCATGA	3 cut(s)	703, 723, 762
Cfr13I	GGNCC	1 cut(s)	1096
Csp6I	GTAC	2 cut(s)	248, 1151
CviAII	CATG	5 cut(s)	201, 704, 724, 763, 895
CviQI	GTAC	2 cut(s)	248, 1151
DdeI	CTNAG	7 cut(s)	369, 418, 488, 532, 600, 617, 1163
DpnI	GATC	1 cut(s)	782
DpnII	GATC	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	236, 1115
EarI	CTCTTC	2 cut(s)	236, 1115
Eco130I	CCWWGG	1 cut(s)	1019
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	1049
EcoRI	GAATTC	2 cut(s)	556, 1073
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	1019
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	1019
FaeI	CATG	5 cut(s)	204, 707, 727, 766, 898
FalI	AAGNNNNNCTT	6 cut(s)	866, 898, 1097, 1129, 1100, 1132
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	5 cut(s)	200, 703, 723, 762, 894
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	448, 864
FokI	GGATG	2 cut(s)	106, 829
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	448, 864
FspBI	CTAG	3 cut(s)	392, 915, 1020
GluI	GCNGC	2 cut(s)	448, 864
HaeIII	GGCC	3 cut(s)	414, 493, 1098
Hin1II	CATG	5 cut(s)	204, 707, 727, 766, 898
HincII	GTYRAC	2 cut(s)	573, 937
HindII	GTYRAC	2 cut(s)	573, 937
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	7 cut(s)	62, 275, 306, 638, 735, 794, 877
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	5 cut(s)	196, 250, 518, 573, 937
Hpy188I	TCNGA	5 cut(s)	294, 529, 603, 618, 981
Hpy188III	TCNNGA	7 cut(s)	261, 704, 715, 724, 763, 1117, 1142
Hpy8I	GTNNAC	5 cut(s)	196, 250, 518, 573, 937
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	4 cut(s)	753, 892, 1045, 1169
HpyCH4III	ACNGT	3 cut(s)	181, 577, 985
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	6 cut(s)	28, 447, 752, 962, 1135, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
HpyF3I	CTNAG	7 cut(s)	369, 418, 488, 532, 600, 617, 1163
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	5 cut(s)	204, 707, 727, 766, 898
Kzo9I	GATC	1 cut(s)	780
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	2 cut(s)	104, 1176
MaeI	CTAG	3 cut(s)	392, 915, 1020
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	67, 210
MalI	GATC	1 cut(s)	782
MboI	GATC	1 cut(s)	780
MboII	GAAGA	7 cut(s)	253, 385, 633, 860, 916, 1120, 1132
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	7 cut(s)	29, 341, 556, 1073, 1078, 1157, 1219
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	3 cut(s)	552, 821, 1004
MnlI	CCTC	8 cut(s)	237, 263, 425, 529, 711, 1109, 1116, 1207
MroXI	GAANNNNTTC	2 cut(s)	881, 1112
MseI	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1222
MslI	CAYNNNNRTG	1 cut(s)	802
MspA1I	CMGCKG	1 cut(s)	568
MspCI	CTTAAG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
NdeII	GATC	1 cut(s)	780
NlaIII	CATG	5 cut(s)	204, 707, 727, 766, 898
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	2 cut(s)	67, 210
NspV	TTCGAA	1 cut(s)	746
PagI	TCATGA	3 cut(s)	703, 723, 762
PcsI	WCGNNNNNNNCGW	1 cut(s)	752
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	2 cut(s)	881, 1112
PfeI	GAWTC	6 cut(s)	62, 275, 306, 735, 794, 877
PkrI	GCNGC	2 cut(s)	449, 865
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	1096
PstI	CTGCAG	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	249, 1152
RsaNI	GTAC	2 cut(s)	248, 1151
RseI	CAYNNNNRTG	1 cut(s)	802
SaqAI	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1222
SatI	GCNGC	2 cut(s)	448, 864
Sau3AI	GATC	1 cut(s)	780
Sau96I	GGNCC	1 cut(s)	1096
SchI	GAGTC	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	104, 1176
SfcI	CTRYAG	1 cut(s)	960
SfuI	TTCGAA	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	802
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	7 cut(s)	29, 341, 556, 1073, 1078, 1157, 1219
SsiI	CCGC	2 cut(s)	88, 863
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	3 cut(s)	392, 915, 1020
StyI	CCWWGG	1 cut(s)	1019
TaaI	ACNGT	3 cut(s)	181, 577, 985
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	1 cut(s)	746
TasI	AATT	7 cut(s)	29, 341, 556, 1073, 1078, 1157, 1219
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	6 cut(s)	62, 275, 306, 735, 794, 877
Tru1I	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1222
Tru9I	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1222
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	67, 210
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	2 cut(s)	67, 210
TspDTI	ATGAA	9 cut(s)	102, 108, 174, 692, 720, 751, 779, 786, 905
TspRI	CASTG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	1049
XapI	RAATTY	3 cut(s)	341, 556, 1073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmaJI	CCTAGG	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	881, 1112
XspI	CTAG	3 cut(s)	392, 915, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.