Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010121

Physical Location & Seq

Genomic Coordinates Reverse (-)

42851261 .. 42851569

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCGAACCTACGTTCAAGAAATTTGACATCGTTTTGGACCACTCAGTCCACTACTACAGCACCGTGAAAAAGCATGGGAAAGGAAAGAACAACAACGGAGATGGACATAGTTTCATCAATGGCAGTACAGTCTACAAGAATATCATGCGCGAGTGGAAAATCTTGGAGAAGAACCTCCCAGACGCCATCTACGTGCGCGCGTACGAGACCCGTGTCTACCTTATGAGGGTTGTGATTATCGGAGCAGCTGACACTGATAAGGATCTACCCCTGGGTATCGAAGAAAAGAAGAAACTGGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051641 GO:0055035 GO:0070727 GO:0071840 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

102

Amino Acids

11.77

Weight (kDa)

9.07

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24490 AT1G24490
fragaria_vesca	FvH4_4g25090 FvH4_4g25090 FvH4_4g25090
malus_domestica	MD13G1106600.v1.1 MD16G1106700.v1.1
prunus_persica	Prupe.1G239700_v2.0.a1
pyrus_communis	pycom13g09240 pycom16g09090
rosa_chinensis	RchiOBHm_Chr4g0432271
rosa_laevigata	RLG00000006858
rosa_multiflora	Rmu_sc0001084.1_g000048
rosa_roxburghii	Rroxscaffold_5G00373720
rosa_rugosa	Rorug04G0255800 Rorug04G0255900
rosa_samantha	Rh4AG312900 Rh4BG320500 Rh4CG335700 Rh4DG315800
rosa_wichuraiana	Rw4G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	135, 219
AccII	CGCG	3 cut(s)	153, 201, 203
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	130, 206
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	153, 201, 203
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	98, 197
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	275
BoxI	GACNNNNGTC	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	273, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	273, 274
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	303
BsePI	GCGCGC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	3 cut(s)	153, 201, 203
BshFI	GGCC	1 cut(s)	5
BsiWI	CGTACG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	3 cut(s)	153, 201, 203
BspPI	GGATC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	273, 274
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	67, 133
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	46
BstFNI	CGCG	3 cut(s)	153, 201, 203
BstHHI	GCGC	3 cut(s)	153, 201, 203
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	3 cut(s)	153, 201, 203
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	3 cut(s)	153, 201, 203
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	129, 205
CviAII	CATG	2 cut(s)	77, 148
CviJI	RGCY	2 cut(s)	5, 251
CviKI_1	RGCY	2 cut(s)	5, 251
CviQI	GTAC	2 cut(s)	129, 205
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	80, 151
FaiI	YATR	4 cut(s)	78, 111, 149, 227
FatI	CATG	2 cut(s)	76, 147
FblI	GTMKAC	2 cut(s)	135, 219
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	3 cut(s)	152, 200, 202
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	3 cut(s)	153, 201, 203
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	80, 151
Hin6I	GCGC	3 cut(s)	151, 199, 201
HinP1I	GCGC	3 cut(s)	151, 199, 201
Hpy166II	GTNNAC	3 cut(s)	52, 136, 220
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	52, 136, 220
HpyCH4III	ACNGT	2 cut(s)	67, 133
HpyCH4IV	ACGT	2 cut(s)	14, 195
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	2 cut(s)	14, 195
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	80, 151
HspAI	GCGC	3 cut(s)	151, 199, 201
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	4 cut(s)	195, 260, 284, 287
Lsp1109I	GCAGC	1 cut(s)	260
MaeII	ACGT	2 cut(s)	14, 195
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	184, 296, 304
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	188, 222
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	3 cut(s)	153, 201, 203
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	80, 151
PasI	CCCWGGG	1 cut(s)	274
PauI	GCGCGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
Pfl23II	CGTACG	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	196
PshAI	GACNNNNGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspLI	CGTACG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	265
PteI	GCGCGC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	130, 206
RsaNI	GTAC	2 cut(s)	129, 205
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	6 cut(s)	13, 17, 180, 198, 225, 253
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	67, 133
TaiI	ACGT	2 cut(s)	17, 198
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	128
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	23
XmiI	GTMKAC	2 cut(s)	135, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.