FvH4_4g25090

ALBINO3-like protein 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
26995542 .. 26998706
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25090.t3

Sequence Viewer

Length: 1638 bp
ATGGCCACTACTCTATTCTCCTTCCACCCAACCCCACTCCTCTCCCCGCCGCCCAATCTCCGCAACCCTCTCCTCCCCCGCTCCCACCGCCCCCACCTCCTCCGCGGCTCCCTCGCCGTCGCCCGCCTCGGACTCGGGTCGGGTCCAATCCCCGACCCGGAACAATCCCTCCCCGCTCTCCACGACCTCCTCTCTAAAGCCGAGAGCTTTCTCTACACGGTTGCCGACGCGGCGGCGACGGAGAATCTGAGCAAGAGCAACAACGATTGGCTGTCTGGGATTACGAACTACCTTGAGAGCGGGCTCAAGGTTTTGAAGGATGGGCTCTCCAGTGTTCATGTTCCATACTCTTATGGATTCGCCATTATATTGTTGACTGTGATTGTTAAAGCTGCGACCTTTCCTCTGACGAAGAAGCAGGTCGAGTCTACTATGGCTATGCTGTCGTTGCAGCCTCAGATAAAAGCGATTCAAGAACGCTACGCCGGGGATCAGGAGAGAATTCAACTCGAAACTGCAAGGTTGTATAAACTAGCTGGCATAAACCCCTTGGCAGGATGCCTGCCTACGCTTGCAACGATACCGATATGGATTGGTTTGTATAGGGCTCTTTCAAATGTGGCAGATGAGGGACTCCTTTCGGAAGGGTTTTTTTGGATACCCTCGTTGGCCGGTCCTACAACGATCGCTGCTCGAAGTAGTGGCAGTGGAGTCTCTTGGCTTTTCCCTTTTGTAGATGGTCATCCACCCCTTGGCTGGTCAGACACCTTGGCATATCTTGTCTTGCCTGTTTTGCTGGTTGTCTCGCAGTATGTATCTGTTCAAATTATGCAGGCATCACAGCCACAGACTAACGATCCAAACATGAAGAGTTCTCAAGCGATTACCAAGTTCCTTCCTTTGATGATTGGTTACTTTTCTCTTTCAGTTCCTTCGGGTCTAAGTCTCTATTGGTTGACAAATAACTTACTGAGCACAGCACAACAAGTATGGCTTCAAAAGTTCGGGGGTGCAAAGAATCCAATTAGTGAACTAAGTGATACCGTGATCAAGGAAGAGGAACCCCAAATTCGAAAGTCTGTCTCTGCAACGAAGTCTGTCTCTACTCTAAATCCAACCAAATCTGTCTCTGCTCTTACTTCAACCCAAAAGGATGCCAAACAAGAAGTGAAGTTGACGTCAGAGGGTCTGCGGCCTGGTGAAAGGTTTAAAATGATAAAGGAGCAAGAAGCCCGGAGAAAAAAGCAAAGAGAAGAAGAAAAGAGGAAACTTGAAGAGGCAGCAGCCAAAGGAAGTCAAAAAACTAATGAGATACATGGAGAAGCCAGATTACTTGAGAAAGAAAATGGAGTTGCAGTTGAAGTAGTGGTTGAAAAGAGAGAAGAAGTTGAATCTCGGACCACAACTCATAATTCCTCTCGTGTTGGAGTTCCTGTCAATGGTGATGGGTCCATAGAGGAATTGAAGGAAGATAAGAACACAGTATCAGGTCAGATGGAAAGCAGTGAAGATTCTACTATTCTAAATGATGGGCACGAGTCACACGAGAGTAGAGAAAATCAAAAGGAAGCTATTAAAGTACAAACTTCCACAACCACCGTGGATAATAAAACAGTATCTGAAGAAGGCAGAGAGTAA

Protein Analysis

546

Amino Acids

59.66

Weight (kDa)

6.27

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 118 - 334 7.4e-52 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010121)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1181
Acc36I ACCTGC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 752
AccBSI CCGCTC 3 cut(s) 81, 176, 300
AccI GTMKAC 1 cut(s) 428
AccII CGCG 2 cut(s) 105, 230
AclWI GGATC 2 cut(s) 498, 851
AcoI YGGCCR 2 cut(s) 3, 669
AcsI RAATTY 2 cut(s) 501, 1068
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 1 cut(s) 1581
AfiI CCNNNNNNNGG 5 cut(s) 157, 554, 752, 756, 1439
AjnI CCWGG 1 cut(s) 1195
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 4 cut(s) 207, 392, 536, 1571
AluI AGCT 4 cut(s) 207, 392, 536, 1571
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 6 cut(s) 718, 808, 950, 1087, 1105, 1132
AlwI GGATC 2 cut(s) 498, 851
AlwNI CAGNNNCTG 1 cut(s) 1619
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 3 cut(s) 3, 669, 1193
ApeKI GCWGC 5 cut(s) 392, 451, 689, 1280, 1283
ApoI RAATTY 2 cut(s) 501, 1068
AspS9I GGNCC 4 cut(s) 143, 674, 1398, 1449
AsuC2I CCSGG 3 cut(s) 158, 487, 1234
AsuHPI GGTGA 2 cut(s) 1211, 1454
AsuII TTCGAA 1 cut(s) 1072
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 4 cut(s) 143, 674, 1398, 1449
BaeGI GKGCMC 1 cut(s) 1536
BaeI ACNNNNGTAYC 2 cut(s) 650, 683
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 306, 327, 610
BarI GAAGNNNNNNTAC 2 cut(s) 1314, 1346
BauI CACGAG 3 cut(s) 1419, 1535, 1544
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 5 cut(s) 379, 463, 676, 1292, 1295
BccI CCATC 5 cut(s) 314, 731, 1439, 1489, 1523
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 1197
BciVI GTATCC 1 cut(s) 651
BclI TGATCA 1 cut(s) 1047
BcnI CCSGG 3 cut(s) 158, 487, 1234
BcoDI GTCTC 6 cut(s) 718, 808, 950, 1087, 1105, 1132
BfaI CTAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 409
BfuI GTATCC 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 230
Bme1390I CCNGG 4 cut(s) 158, 487, 1197, 1234
Bme18I GGWCC 4 cut(s) 143, 674, 1398, 1449
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 143, 674, 1398, 1449
BmiI GGNNCC 4 cut(s) 109, 144, 1062, 1450
BmrFI CCNGG 4 cut(s) 158, 487, 1197, 1234
BmsI GCATC 3 cut(s) 548, 845, 1144
BoxI GACNNNNGTC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 1072
BpuEI CTTGAG 4 cut(s) 290, 314, 861, 1355
BpuMI CCSGG 3 cut(s) 158, 487, 1234
BsaBI GATNNNNATC 1 cut(s) 741
BsaHI GRCGYC 1 cut(s) 1178
BsaJI CCNNGG 7 cut(s) 103, 127, 486, 549, 751, 768, 1599
BsaXI ACNNNNNCTCC 6 cut(s) 153, 183, 1341, 1371, 1419, 1449
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 554, 752, 756, 1439
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 7 cut(s) 103, 127, 486, 549, 751, 768, 1599
BseGI GGATG 4 cut(s) 325, 563, 742, 1159
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 5 cut(s) 157, 554, 752, 756, 1439
BseMII CTCAG 3 cut(s) 239, 470, 962
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 4 cut(s) 29, 62, 89, 179
BseSI GKGCMC 1 cut(s) 1536
BseXI GCAGC 5 cut(s) 379, 463, 676, 1292, 1295
Bsh1236I CGCG 2 cut(s) 105, 230
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 3 cut(s) 5, 671, 1195
BsiEI CGRYCG 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 977
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 4 cut(s) 158, 486, 672, 1234
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 5 cut(s) 157, 554, 752, 756, 1439
BsmAI GTCTC 6 cut(s) 718, 808, 950, 1087, 1105, 1132
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 3 cut(s) 5, 671, 1195
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 1072
Bsp1286I GDGCHC 5 cut(s) 306, 327, 610, 977, 1536
Bsp143I GATC 4 cut(s) 490, 684, 856, 1047
BspANI GGCC 3 cut(s) 5, 671, 1195
BspCNI CTCAG 3 cut(s) 240, 469, 963
BspFNI CGCG 2 cut(s) 105, 230
BspLI GGNNCC 4 cut(s) 109, 144, 1062, 1450
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 2 cut(s) 498, 851
BspT104I TTCGAA 1 cut(s) 1072
BsrBI CCGCTC 3 cut(s) 81, 176, 300
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 7 cut(s) 103, 127, 486, 549, 751, 768, 1599
BssMI GATC 4 cut(s) 490, 684, 856, 1047
BssNI GRCGYC 1 cut(s) 1178
BssSI CACGAG 3 cut(s) 1419, 1535, 1544
BssT1I CCWWGG 3 cut(s) 549, 751, 768
Bst2BI CACGAG 3 cut(s) 1419, 1535, 1544
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 6 cut(s) 220, 379, 1045, 1483, 1600, 1615
Bst6I CTCTTC 3 cut(s) 863, 1050, 1269
BstACI GRCGYC 1 cut(s) 1178
BstBI TTCGAA 1 cut(s) 1072
BstC8I GCNNGC 6 cut(s) 124, 302, 538, 563, 573, 834
BstDEI CTNAG 5 cut(s) 248, 456, 941, 971, 1034
BstDSI CCRYGG 2 cut(s) 103, 1599
BstF5I GGATG 4 cut(s) 325, 563, 742, 1159
BstFNI CGCG 2 cut(s) 105, 230
BstKTI GATC 4 cut(s) 493, 687, 859, 1050
BstMAI GTCTC 6 cut(s) 718, 808, 950, 1087, 1105, 1132
BstMBI GATC 4 cut(s) 490, 684, 856, 1047
BstMCI CGRYCG 1 cut(s) 687
BstMWI GCNNNNNNNGC 4 cut(s) 87, 230, 448, 793
BstNI CCWGG 1 cut(s) 1197
BstPAI GACNNNNGTC 1 cut(s) 136
BstSCI CCNGG 4 cut(s) 156, 485, 1195, 1232
BstSLI GKGCMC 1 cut(s) 1536
BstUI CGCG 2 cut(s) 105, 230
BstV1I GCAGC 5 cut(s) 379, 463, 676, 1292, 1295
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 5, 671, 1195
BtgI CCRYGG 2 cut(s) 103, 1599
BtsCI GGATG 4 cut(s) 325, 563, 742, 1159
BtsI GCAGTG 2 cut(s) 712, 1510
BtsIMutI CAGTG 3 cut(s) 337, 712, 1510
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 6 cut(s) 124, 302, 538, 563, 573, 834
CaiI CAGNNNCTG 1 cut(s) 1619
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 4 cut(s) 143, 674, 1398, 1449
Cfr42I CCGCGG 1 cut(s) 106
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 1580
CspCI CAANNNNNGTGG 2 cut(s) 1581, 1616
CviAII CATG 3 cut(s) 338, 865, 1316
CviQI GTAC 1 cut(s) 1580
DdeI CTNAG 5 cut(s) 248, 456, 941, 971, 1034
DpnI GATC 4 cut(s) 492, 686, 858, 1049
DpnII GATC 4 cut(s) 490, 684, 856, 1047
DraI TTTAAA 1 cut(s) 1210
EaeI YGGCCR 2 cut(s) 3, 669
Eam1104I CTCTTC 3 cut(s) 863, 1050, 1269
EarI CTCTTC 3 cut(s) 863, 1050, 1269
Eco130I CCWWGG 3 cut(s) 549, 751, 768
Eco24I GRGCYC 3 cut(s) 306, 327, 610
Eco47I GGWCC 4 cut(s) 143, 674, 1398, 1449
Eco88I CYCGRG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 1195
EcoT14I CCWWGG 3 cut(s) 549, 751, 768
EcoT38I GRGCYC 3 cut(s) 306, 327, 610
ErhI CCWWGG 3 cut(s) 549, 751, 768
FaeI CATG 3 cut(s) 341, 868, 1319
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FaqI GGGAC 1 cut(s) 645
FatI CATG 3 cut(s) 337, 864, 1315
FauI CCCGC 5 cut(s) 54, 86, 131, 181, 293
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 1 cut(s) 428
FokI GGATG 4 cut(s) 332, 570, 729, 1166
FriOI GRGCYC 3 cut(s) 306, 327, 610
FspBI CTAG 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 3 cut(s) 5, 671, 1195
HapII CCGG 4 cut(s) 158, 486, 672, 1234
HgaI GACGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 1178
Hin1II CATG 3 cut(s) 341, 868, 1319
HincII GTYRAC 3 cut(s) 375, 957, 1176
HindII GTYRAC 3 cut(s) 375, 957, 1176
HpaII CCGG 4 cut(s) 158, 486, 672, 1234
HphI GGTGA 2 cut(s) 1211, 1454
Hpy166II GTNNAC 5 cut(s) 375, 429, 957, 1031, 1176
Hpy188III TCNNGA 2 cut(s) 473, 494
Hpy8I GTNNAC 5 cut(s) 375, 429, 957, 1031, 1176
Hpy99I CGWCG 3 cut(s) 122, 230, 241
HpyAV CCTTC 7 cut(s) 31, 310, 638, 905, 942, 1459, 1619
HpyCH4III ACNGT 6 cut(s) 220, 379, 1045, 1483, 1600, 1615
HpyCH4IV ACGT 1 cut(s) 1178
HpyCH4V TGCA 7 cut(s) 451, 518, 575, 832, 1013, 1088, 1355
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 230, 448, 793
HpyF3I CTNAG 5 cut(s) 248, 456, 941, 971, 1034
HpySE526I ACGT 1 cut(s) 1178
Hsp92I GRCGYC 1 cut(s) 1178
Hsp92II CATG 3 cut(s) 341, 868, 1319
Ksp22I TGATCA 1 cut(s) 1047
KspI CCGCGG 1 cut(s) 106
Kzo9I GATC 4 cut(s) 490, 684, 856, 1047
LmnI GCTCC 3 cut(s) 86, 113, 1222
Lsp1109I GCAGC 5 cut(s) 379, 463, 676, 1292, 1295
LweI GCATC 3 cut(s) 548, 845, 1144
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 1178
MaeIII GTNAC 2 cut(s) 911, 1539
MalI GATC 4 cut(s) 492, 686, 858, 1049
MbiI CCGCTC 3 cut(s) 81, 176, 300
MboI GATC 4 cut(s) 490, 684, 856, 1047
MhlI GDGCHC 5 cut(s) 306, 327, 610, 977, 1536
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 501, 825, 1023, 1068, 1411, 1460
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 126, 434, 627, 720, 1547
MmeI TCCRAC 2 cut(s) 1139, 1405
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 387, 1209, 1575
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 4 cut(s) 158, 486, 672, 1234
MspR9I CCNGG 4 cut(s) 158, 487, 1197, 1234
MvaI CCWGG 1 cut(s) 1197
MvnI CGCG 2 cut(s) 105, 230
MwoI GCNNNNNNNGC 4 cut(s) 87, 230, 448, 793
NciI CCSGG 3 cut(s) 158, 487, 1234
NdeII GATC 4 cut(s) 490, 684, 856, 1047
NlaIII CATG 3 cut(s) 341, 868, 1319
NlaIV GGNNCC 4 cut(s) 109, 144, 1062, 1450
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 1539
NspV TTCGAA 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 2 cut(s) 575, 1542
PfeI GAWTC 6 cut(s) 244, 357, 469, 1018, 1391, 1511
PflMI CCANNNNNTGG 1 cut(s) 752
Ple19I CGATCG 1 cut(s) 687
PleI GAGTC 5 cut(s) 126, 433, 627, 719, 1546
PpsI GAGTC 5 cut(s) 126, 433, 627, 719, 1546
PshAI GACNNNNGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 1195
PspGI CCWGG 1 cut(s) 1195
PspN4I GGNNCC 4 cut(s) 109, 144, 1062, 1450
PspPI GGNCC 4 cut(s) 143, 674, 1398, 1449
PstNI CAGNNNCTG 1 cut(s) 1619
PvuI CGATCG 1 cut(s) 687
RsaI GTAC 1 cut(s) 1581
RsaNI GTAC 1 cut(s) 1580
SacII CCGCGG 1 cut(s) 106
SaqAI TTAA 3 cut(s) 387, 1209, 1575
Sau3AI GATC 4 cut(s) 490, 684, 856, 1047
Sau96I GGNCC 4 cut(s) 143, 674, 1398, 1449
SchI GAGTC 5 cut(s) 126, 434, 627, 720, 1547
ScrFI CCNGG 4 cut(s) 158, 487, 1197, 1234
SduI GDGCHC 5 cut(s) 306, 327, 610, 977, 1536
SfaNI GCATC 3 cut(s) 548, 845, 1144
Sfr303I CCGCGG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 1072
SgrBI CCGCGG 1 cut(s) 106
SinI GGWCC 4 cut(s) 143, 674, 1398, 1449
SmlI CTYRAG 4 cut(s) 293, 305, 876, 1334
SmoI CTYRAG 4 cut(s) 293, 305, 876, 1334
Sse9I AATT 6 cut(s) 501, 825, 1023, 1068, 1411, 1460
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 4 cut(s) 156, 485, 1195, 1232
StyI CCWWGG 3 cut(s) 549, 751, 768
TaaI ACNGT 6 cut(s) 220, 379, 1045, 1483, 1600, 1615
TaiI ACGT 1 cut(s) 1181
TaqI TCGA 4 cut(s) 423, 510, 694, 1072
TasI AATT 6 cut(s) 501, 825, 1023, 1068, 1411, 1460
TatI WGTACW 1 cut(s) 1579
TauI GCSGC 5 cut(s) 52, 108, 233, 236, 1195
TfiI GAWTC 6 cut(s) 244, 357, 469, 1018, 1391, 1511
Tru1I TTAA 3 cut(s) 387, 1209, 1575
Tru9I TTAA 3 cut(s) 387, 1209, 1575
TscAI CASTG 3 cut(s) 337, 712, 1510
TseFI GTSAC 1 cut(s) 1539
TseI GCWGC 5 cut(s) 392, 451, 689, 1280, 1283
Tsp45I GTSAC 1 cut(s) 1539
TspDTI ATGAA 2 cut(s) 326, 881
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 337, 712, 1510
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 4 cut(s) 143, 674, 1398, 1449
XapI RAATTY 2 cut(s) 501, 1068
XcmI CCANNNNNNNNNTGG 2 cut(s) 753, 1597
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 1 cut(s) 533
ZraI GACGTC 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.