AT1G26100

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014445
Physical Location & Seq
Reverse (-)
9022542 .. 9024081
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26100.1

Sequence Viewer

Length: 711 bp
ATGGGAAGTGTAGATCCTTCAAGACTATCATTGGTCTTGTTTGCGAGACTGTCCGGTTTAGTAGTCGCAGTTTCGGTTCTGTACTGGGCTCTCTTCCTGCCTAATCTAGGACTCAGCTACTCTACTCTTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATTCTGATACACAGATGGTTGCCTGGTTCAAGGAAAACAAAGAAAGCTGTTCATTTATGGCTACAAGGAATGGCATTGGCCTCTGCAGTGTTTGGGATTTGGACAAAGTTCCATTACCAACGTGGAGTTTTCGCCAATTTCTACAGTCTCCATTCTTGGATGGGTTTGCTCTCTGTTTCTCTCTTCGCTGCCCAGTGGGTGACTGGGTTCATGAGCTTCTGGCATAGAGGAGAAGTACGGACTACAAGAACCACGTTTCTTCCCTGGCATGTATTCCTCGGACTCTATACCTATGGTTTAGCCATTGCCACAGCTGAGACCGGACTGCTTGAGAAACTGACGTTCCTTCAGACCAAGAGGAATGTCCCCAGACGCGGTTCTGAATCAATGACTGTCAATGGTTTAGGGCTTGGCTTGGCTCTACTCGGTTGCATTGTTATAACTGCTGCTATTTTGCCAAAGTATCAGAGCCATTCTCGTGATGAGAAACTCGTTTATTCATCTCAAGATCGTCCTAAATGTTTGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

236

Amino Acids

26.31

Weight (kDa)

10.15

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 43 - 174 5e-42 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26100
fragaria_vesca FvH4_4g28220 FvH4_4g28220 FvH4_4g28220 FvH4_4g28220
malus_domestica MD13G1048100.v1.1
prunus_persica Prupe.1G304000_v2.0.a1
pyrus_communis pycom13g04220
rosa_chinensis RchiOBHm_Chr4g0436011
rosa_laevigata RLG00000006542
rosa_roxburghii Rroxscaffold_5G00377160
rosa_rugosa Rorug04G0291200
rosa_samantha Rh4AG345500 Rh4BG354500 Rh4CG369000 Rh4DG348200
rosa_wichuraiana Rw4G030210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AccII CGCG 1 cut(s) 552
AciI CCGC 1 cut(s) 552
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 2 cut(s) 83, 414
AfiI CCNNNNNNNGG 2 cut(s) 107, 551
AgsI TTSAA 2 cut(s) 21, 207
AjnI CCWGG 2 cut(s) 199, 440
AluBI AGCT 4 cut(s) 117, 224, 393, 491
AluI AGCT 4 cut(s) 117, 224, 393, 491
Alw26I GTCTC 3 cut(s) 40, 329, 488
AlwI GGATC 1 cut(s) 8
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 365, 623
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 157, 388
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 352, 610
BccI CCATC 3 cut(s) 136, 186, 331
BciT130I CCWGG 2 cut(s) 201, 442
BcoDI GTCTC 3 cut(s) 40, 329, 488
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 261, 319
BisI GCNGC 2 cut(s) 366, 624
BlsI GCNGC 2 cut(s) 367, 625
Bme1390I CCNGG 2 cut(s) 201, 442
BmrFI CCNGG 2 cut(s) 201, 442
BmrI ACTGGG 3 cut(s) 94, 364, 390
BmuI ACTGGG 3 cut(s) 94, 364, 390
BpiI GAAGAC 1 cut(s) 696
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpuEI CTTGAG 2 cut(s) 527, 666
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 440, 454
BsaWI WCCGGW 2 cut(s) 53, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 551
Bse1I ACTGG 3 cut(s) 89, 370, 385
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 201, 442
BseDI CCNNGG 2 cut(s) 440, 454
BseGI GGATG 2 cut(s) 130, 342
BseLI CCNNNNNNNGG 2 cut(s) 107, 551
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 2 cut(s) 127, 483
BseNI ACTGG 3 cut(s) 89, 370, 385
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 352, 610
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 54, 498
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 107, 551
BsmAI GTCTC 3 cut(s) 40, 329, 488
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 13, 685
BspACI CCGC 1 cut(s) 552
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 126, 484
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 3 cut(s) 89, 370, 385
BssECI CCNNGG 2 cut(s) 440, 454
BssMI GATC 2 cut(s) 13, 685
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 2 cut(s) 201, 442
Bst4CI ACNGT 3 cut(s) 51, 323, 571
Bst6I CTCTTC 3 cut(s) 98, 132, 365
BstDEI CTNAG 2 cut(s) 113, 492
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 130, 342
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 2 cut(s) 16, 688
BstMAI GTCTC 3 cut(s) 40, 329, 488
BstMBI GATC 2 cut(s) 13, 685
BstNI CCWGG 2 cut(s) 201, 442
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 199, 440
BstSFI CTRYAG 2 cut(s) 261, 319
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 352, 610
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 2 cut(s) 130, 342
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 377
CciI TCATGA 1 cut(s) 387
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 82, 413
CviAII CATG 2 cut(s) 388, 446
CviQI GTAC 2 cut(s) 82, 413
DdeI CTNAG 2 cut(s) 113, 492
DpnI GATC 2 cut(s) 15, 687
DpnII GATC 2 cut(s) 13, 685
Eam1104I CTCTTC 3 cut(s) 98, 132, 365
EarI CTCTTC 3 cut(s) 98, 132, 365
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 199, 440
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 2 cut(s) 391, 449
FaiI YATR 7 cut(s) 235, 389, 402, 447, 465, 471, 617
FaqI GGGAC 1 cut(s) 527
FatI CATG 2 cut(s) 387, 445
Fnu4HI GCNGC 2 cut(s) 366, 624
FokI GGATG 2 cut(s) 117, 349
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 366, 624
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 366, 624
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 54, 498
HgaI GACGC 1 cut(s) 558
Hin1II CATG 2 cut(s) 391, 449
HinfI GANTC 4 cut(s) 111, 178, 459, 560
HpaII CCGG 2 cut(s) 54, 498
HphI GGTGA 2 cut(s) 157, 388
Hpy188I TCNGA 5 cut(s) 183, 458, 528, 559, 645
Hpy188III TCNNGA 5 cut(s) 21, 388, 656, 683, 708
HpyAV CCTTC 2 cut(s) 27, 533
HpyCH4III ACNGT 3 cut(s) 51, 323, 571
HpyCH4IV ACGT 3 cut(s) 298, 431, 518
HpyCH4V TGCA 2 cut(s) 263, 609
HpyF3I CTNAG 2 cut(s) 113, 492
HpySE526I ACGT 3 cut(s) 298, 431, 518
Hsp92II CATG 2 cut(s) 391, 449
Kzo9I GATC 2 cut(s) 13, 685
Lsp1109I GCAGC 2 cut(s) 352, 610
MaeI CTAG 1 cut(s) 107
MaeII ACGT 3 cut(s) 298, 431, 518
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 15, 687
MboI GATC 2 cut(s) 13, 685
MboII GAAGA 5 cut(s) 85, 119, 352, 428, 696
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 313
MlyI GAGTC 2 cut(s) 105, 453
MnlI CCTC 5 cut(s) 144, 268, 398, 464, 528
MroXI GAANNNNTTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 2 cut(s) 54, 498
MspR9I CCNGG 2 cut(s) 201, 442
MvaI CCWGG 2 cut(s) 201, 442
MvnI CGCG 1 cut(s) 552
NdeII GATC 2 cut(s) 13, 685
NlaIII CATG 2 cut(s) 391, 449
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 449
PagI TCATGA 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 178, 560
PkrI GCNGC 2 cut(s) 367, 625
PleI GAGTC 2 cut(s) 105, 453
PpsI GAGTC 2 cut(s) 105, 453
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 199, 440
PspGI CCWGG 2 cut(s) 199, 440
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 2 cut(s) 83, 414
RsaNI GTAC 2 cut(s) 82, 413
RseI CAYNNNNRTG 1 cut(s) 654
SatI GCNGC 2 cut(s) 366, 624
Sau3AI GATC 2 cut(s) 13, 685
SchI GAGTC 2 cut(s) 105, 453
ScrFI CCNGG 2 cut(s) 201, 442
SduI GDGCHC 1 cut(s) 91
SetI ASST 8 cut(s) 119, 226, 301, 395, 434, 470, 493, 521
SfcI CTRYAG 2 cut(s) 261, 319
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 506, 681
SmoI CTYRAG 2 cut(s) 506, 681
Sse9I AATT 1 cut(s) 313
SsiI CCGC 1 cut(s) 552
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 199, 440
TaaI ACNGT 3 cut(s) 51, 323, 571
TaiI ACGT 3 cut(s) 301, 434, 521
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 2 cut(s) 178, 560
TscAI CASTG 2 cut(s) 270, 377
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 365, 623
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 5 cut(s) 119, 145, 218, 376, 666
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 270, 377
XagI CCTNNNNNAGG 1 cut(s) 105
XceI RCATGY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 2 cut(s) 296, 377
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.