AT1G26900

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017199
Physical Location & Seq
Reverse (-)
9319643 .. 9321512
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26900.1

Sequence Viewer

Length: 1719 bp
ATGACATTGGCGATTACGTCACGGCTCAGGCGCAATTTCGTGTTCCGTCGTAGGAATCTTGAATCGTTGTTGTCTCCACAATGTCAGAAACTTATCAACGATCTAAGGTCTTGCAGAGACACCGTCGAAGTTTCTCGAATTCATGGTTACATGGTGAAAACGGGACTCGACAAGGACGATTTCGCAGTGAGCAAGCTTCTTGCTTTTTCCTCTGTACTTGACATTCGATACGCTTCGTCGATCTTCGAGCATGTCTCCAACACTAATCTCTTTATGTTCAACACTATGATCAGAGGTTACTCGATTAGCGATGAGCCGGAGCGAGCATTTTCTGTTTTCAACCAATTGAGAGCTAAAGGTTTGACCTTGGACCGATTCTCGTTTATCACGACTCTTAAATCATGTTCTCGTGAATTGTGTGTTTCAATTGGTGAGGGATTGCATGGGATTGCTTTGAGATCTGGGTTTATGGTTTTTACTGATTTGAGGAATGCTCTTATACATTTTTACTGTGTTTGTGGAAAGATTAGTGATGCTCGGAAAGTGTTCGACGAAATGCCGCAGAGTGTTGATGCTGTTACGTTTAGTACTTTGATGAATGGGTATCTTCAGGTTTCTAAGAAAGCGTTGGCTTTGGATTTGTTTAGGATTATGAGAAAAAGTGAGGTGGTCGTTAATGTCAGTACGTTGCTTAGCTTTCTTTCGGCTATTAGTGATCTAGGAGATTTGTCTGGAGCAGAATCTGCTCATGTGTTATGCATCAAGATTGGCCTTGATTTAGACTTGCATTTAATCACAGCTTTGATAGGGATGTACGGCAAAACTGGGGGTATCAGTTCAGCACGCAGGATCTTTGATTGCGCCATTCGAAAGGATGTTGTTACATGGAACTGTATGATAGACCAATATGCCAAAACGGGTCTCCTTGAAGAGTGTGTATGGCTACTGAGGCAGATGAAGTATGAAAAAATGAAACCGAATTCATCTACATTTGTTGGGCTGTTGTCTTCCTGTGCGTACAGTGAAGCAGCATTCGTAGGACGTACTGTTGCTGATCTATTGGAAGAGGAAAGAATAGCTTTGGATGCAATACTTGGAACTGCACTCGTTGATATGTATGCAAAAGTAGGATTGCTTGAAAAAGCTGTTGAGATTTTCAATAGAATGAAGGATAAGGATGTAAAGTCCTGGACCGCGATGATCTCGGGTTATGGAGCTCATGGACTAGCAAGAGAAGCAGTAACACTATTCAATAAGATGGAGGAAGAGAACTGCAAAGTGAGACCCAATGAGATTACCTTCTTGGTTGTGCTGAATGCTTGTAGCCATGGAGGGTTGGTAATGGAAGGAATCAGATGCTTTAAGAGGATGGTTGAGGCTTACAGCTTCACGCCCAAAGTTGAACATTATGGTTGTGTGGTTGATCTTTTAGGTCGAGCGGGGCAGTTAGAGGAAGCGTATGAGTTAATAAGGAACTTACCGATCACAAGTGATTCAACGGCTTGGCGTGCTCTGCTAGCTGCTTGTAGAGTATACGGGAATGCAGATTTGGGGGAAAGTGTGATGATGAGATTGGCTGAAATGGGTGAGACTCATCCGGCAGATGCAATTCTTCTAGCTGGGACACACGCTGTTGCAGGGAACCCAGAAAAATCATTAGATAATGAGTTGAATAAAGGGAGAAAAGAAGCTGGATACAGCGCCATTGAAATAGAATAG

Protein Analysis

572

Amino Acids

63.59

Weight (kDa)

6.84

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 89 - 136 9.1e-07 PPR repeat family
PPR_2 PF13041 191 - 235 1e-05 PPR repeat family
PPR_2 PF13041 291 - 339 5.5e-11 PPR repeat family
PPR PF01535 294 - 321 2.9e-07 PPR repeat
PPR_2 PF13041 392 - 442 3.6e-10 PPR repeat family
PPR PF01535 396 - 425 4.9e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26900
malus_domestica MD13G1073800.v1.1
prunus_persica Prupe.1G272200_v2.0.a1
pyrus_communis pycom16g06510
rosa_chinensis RchiOBHm_Chr4g0440061
rosa_laevigata RLG00000006209
rosa_multiflora Rmu_sc0001685.1_g000003
rosa_rugosa Rorug04G0324000
rosa_samantha Rh4AG374600 Rh4BG387000 Rh4CG401500 Rh4DG381200
rosa_wichuraiana Rw4G032050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1439
AccI GTMKAC 1 cut(s) 1533
AccII CGCG 1 cut(s) 1196
AciI CCGC 3 cut(s) 560, 1194, 1439
AclWI GGATC 1 cut(s) 857
AcsI RAATTY 2 cut(s) 138, 979
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 6 cut(s) 216, 589, 685, 815, 1019, 1045
AjnI CCWGG 1 cut(s) 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 1532, 1564
Alw21I GWGCWC 2 cut(s) 1219, 1513
Alw26I GTCTC 6 cut(s) 78, 111, 259, 926, 1276, 1583
AlwI GGATC 1 cut(s) 857
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 1204
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 2 cut(s) 1028, 1520
ApoI RAATTY 2 cut(s) 138, 979
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 3 cut(s) 33, 863, 1703
AspS9I GGNCC 2 cut(s) 370, 1191
AsuHPI GGTGA 3 cut(s) 166, 443, 1598
AsuII TTCGAA 1 cut(s) 868
AsuNHI GCTAGC 1 cut(s) 1516
AvaI CYCGRG 1 cut(s) 1204
AvaII GGWCC 2 cut(s) 370, 1191
BanII GRGCYC 1 cut(s) 1219
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 999
Bbv12I GWGCWC 2 cut(s) 1219, 1513
BbvI GCAGC 2 cut(s) 1040, 1507
BccI CCATC 2 cut(s) 1252, 1363
BceAI ACGGC 3 cut(s) 38, 832, 1515
BciT130I CCWGG 1 cut(s) 1189
BciVI GTATCC 1 cut(s) 1688
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 6 cut(s) 78, 111, 259, 926, 1276, 1583
BfaI CTAG 4 cut(s) 719, 1226, 1517, 1616
BfoI RGCGCY 1 cut(s) 1704
BfuI GTATCC 1 cut(s) 1688
BglII AGATCT 1 cut(s) 458
BisI GCNGC 3 cut(s) 560, 1029, 1521
BlpI GCTNAGC 1 cut(s) 692
BlsI GCNGC 3 cut(s) 561, 1030, 1522
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 1189
Bme18I GGWCC 2 cut(s) 370, 1191
BmeT110I CYCGRG 1 cut(s) 1204
BmgT120I GGNCC 2 cut(s) 370, 1191
BmiI GGNNCC 1 cut(s) 1643
BmrFI CCNGG 1 cut(s) 1189
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 6 cut(s) 523, 562, 768, 1075, 1346, 1594
BmtI GCTAGC 1 cut(s) 1520
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 999
BplI GAGNNNNNCTC 4 cut(s) 239, 271, 478, 510
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 26
Bpu1102I GCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 868
BsaI GGTCTC 2 cut(s) 926, 1276
BsaJI CCNNGG 2 cut(s) 366, 1327
BsaXI ACNNNNNCTCC 2 cut(s) 1323, 1353
Bse1I ACTGG 1 cut(s) 829
BseBI CCWGG 1 cut(s) 1189
BseDI CCNNGG 2 cut(s) 366, 1327
BseGI GGATG 6 cut(s) 816, 880, 1090, 1183, 1374, 1594
BseMII CTCAG 2 cut(s) 40, 938
BseNI ACTGG 1 cut(s) 829
BseXI GCAGC 2 cut(s) 1040, 1507
BseYI CCCAGC 1 cut(s) 1619
BsgI GTGCAG 1 cut(s) 1086
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 1219, 1513
BsiHKCI CYCGRG 1 cut(s) 1204
BsiSI CCGG 2 cut(s) 317, 1598
BslFI GGGAC 2 cut(s) 177, 1636
BsmAI GTCTC 6 cut(s) 78, 111, 259, 926, 1276, 1583
BsmFI GGGAC 2 cut(s) 177, 1636
BsmI GAATGC 4 cut(s) 496, 1031, 1321, 1546
BsnI GGCC 1 cut(s) 771
Bso31I GGTCTC 2 cut(s) 926, 1276
BsoBI CYCGRG 1 cut(s) 1204
Bsp119I TTCGAA 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 1219, 1513
Bsp1720I GCTNAGC 1 cut(s) 692
Bsp19I CCATGG 1 cut(s) 1327
BspACI CCGC 3 cut(s) 560, 1194, 1439
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 2 cut(s) 39, 939
BspFNI CGCG 1 cut(s) 1196
BspLI GGNNCC 1 cut(s) 1643
BspOI GCTAGC 1 cut(s) 1520
BspPI GGATC 1 cut(s) 857
BspT104I TTCGAA 1 cut(s) 868
BspTNI GGTCTC 2 cut(s) 926, 1276
BsrBI CCGCTC 1 cut(s) 1439
BsrI ACTGG 1 cut(s) 829
BssECI CCNNGG 2 cut(s) 366, 1327
BssNAI GTATAC 1 cut(s) 1534
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 366, 1327
Bst1107I GTATAC 1 cut(s) 1534
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 1189
Bst4CI ACNGT 5 cut(s) 124, 512, 893, 1022, 1048
Bst6I CTCTTC 3 cut(s) 924, 1059, 1260
BstAPI GCANNNNNTGC 1 cut(s) 743
BstBI TTCGAA 1 cut(s) 868
BstC8I GCNNGC 5 cut(s) 194, 324, 844, 1509, 1518
BstDEI CTNAG 5 cut(s) 26, 104, 618, 692, 947
BstDSI CCRYGG 1 cut(s) 1327
BstF5I GGATG 6 cut(s) 816, 880, 1090, 1183, 1374, 1594
BstFNI CGCG 1 cut(s) 1196
BstH2I RGCGCY 1 cut(s) 1704
BstHHI GCGC 3 cut(s) 33, 863, 1703
BstMAI GTCTC 6 cut(s) 78, 111, 259, 926, 1276, 1583
BstMWI GCNNNNNNNGC 7 cut(s) 743, 949, 1085, 1235, 1508, 1513, 1517
BstNI CCWGG 1 cut(s) 1189
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 1187
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 2 cut(s) 1040, 1507
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 2 cut(s) 458, 849
BstYI RGATCY 2 cut(s) 458, 849
BstZ17I GTATAC 1 cut(s) 1534
BsuI GTATCC 1 cut(s) 1688
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 1327
BtgZI GCGATG 2 cut(s) 324, 1211
BtsCI GGATG 6 cut(s) 816, 880, 1090, 1183, 1374, 1594
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 1027
Cac8I GCNNGC 5 cut(s) 194, 324, 844, 1509, 1518
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 3 cut(s) 33, 863, 1703
Cfr13I GGNCC 2 cut(s) 370, 1191
Csp6I GTAC 6 cut(s) 215, 588, 684, 814, 1018, 1044
CviAII CATG 9 cut(s) 143, 151, 251, 402, 443, 749, 885, 1220, 1328
CviQI GTAC 6 cut(s) 215, 588, 684, 814, 1018, 1044
DdeI CTNAG 5 cut(s) 26, 104, 618, 692, 947
Eam1104I CTCTTC 3 cut(s) 924, 1059, 1260
EarI CTCTTC 3 cut(s) 924, 1059, 1260
Ecl136II GAGCTC 1 cut(s) 1217
Eco130I CCWWGG 2 cut(s) 366, 1327
Eco24I GRGCYC 1 cut(s) 1219
Eco31I GGTCTC 2 cut(s) 926, 1276
Eco47I GGWCC 2 cut(s) 370, 1191
Eco53kI GAGCTC 1 cut(s) 1217
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 1204
EcoICRI GAGCTC 1 cut(s) 1217
EcoRI GAATTC 2 cut(s) 138, 979
EcoRII CCWGG 1 cut(s) 1187
EcoT14I CCWWGG 2 cut(s) 366, 1327
EcoT22I ATGCAT 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 1219
ErhI CCWWGG 2 cut(s) 366, 1327
FaeI CATG 9 cut(s) 146, 154, 254, 405, 446, 752, 888, 1223, 1331
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FaqI GGGAC 2 cut(s) 177, 1636
FatI CATG 9 cut(s) 142, 150, 250, 401, 442, 748, 884, 1219, 1327
FauI CCCGC 1 cut(s) 1432
FbaI TGATCA 1 cut(s) 288
FblI GTMKAC 1 cut(s) 1533
Fnu4HI GCNGC 3 cut(s) 560, 1029, 1521
FokI GGATG 6 cut(s) 823, 887, 1097, 1190, 1381, 1581
FriOI GRGCYC 1 cut(s) 1219
Fsp4HI GCNGC 3 cut(s) 560, 1029, 1521
FspBI CTAG 4 cut(s) 719, 1226, 1517, 1616
GlaI GCGC 3 cut(s) 32, 862, 1702
GluI GCNGC 3 cut(s) 560, 1029, 1521
GsaI CCCAGC 1 cut(s) 1623
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 1704
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 317, 1598
HhaI GCGC 3 cut(s) 33, 863, 1703
Hin1II CATG 9 cut(s) 146, 154, 254, 405, 446, 752, 888, 1223, 1331
Hin6I GCGC 3 cut(s) 31, 861, 1701
HinP1I GCGC 3 cut(s) 31, 861, 1701
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 9 cut(s) 55, 62, 165, 375, 391, 740, 1350, 1493, 1591
HpaII CCGG 2 cut(s) 317, 1598
HphI GGTGA 3 cut(s) 166, 443, 1598
Hpy166II GTNNAC 1 cut(s) 1534
Hpy188I TCNGA 4 cut(s) 87, 293, 540, 1355
Hpy188III TCNNGA 6 cut(s) 59, 135, 388, 410, 732, 763
Hpy8I GTNNAC 1 cut(s) 1534
Hpy99I CGWCG 4 cut(s) 51, 128, 241, 554
HpyAV CCTTC 3 cut(s) 1162, 1309, 1340
HpyCH4III ACNGT 5 cut(s) 124, 512, 893, 1022, 1048
HpyCH4IV ACGT 4 cut(s) 17, 581, 686, 1042
HpyF10VI GCNNNNNNNGC 7 cut(s) 743, 949, 1085, 1235, 1508, 1513, 1517
HpyF3I CTNAG 5 cut(s) 26, 104, 618, 692, 947
HpySE526I ACGT 4 cut(s) 17, 581, 686, 1042
Hsp92II CATG 9 cut(s) 146, 154, 254, 405, 446, 752, 888, 1223, 1331
HspAI GCGC 3 cut(s) 31, 861, 1701
Ksp22I TGATCA 1 cut(s) 288
LmnI GCTCC 3 cut(s) 319, 734, 1214
Lsp1109I GCAGC 2 cut(s) 1040, 1507
LweI GCATC 6 cut(s) 523, 562, 768, 1075, 1346, 1594
MaeI CTAG 4 cut(s) 719, 1226, 1517, 1616
MaeII ACGT 4 cut(s) 17, 581, 686, 1042
MaeIII GTNAC 6 cut(s) 18, 146, 296, 577, 880, 1240
MbiI CCGCTC 1 cut(s) 1439
MboII GAAGA 7 cut(s) 235, 599, 941, 999, 1076, 1277, 1604
MfeI CAATTG 2 cut(s) 344, 426
MflI RGATCY 2 cut(s) 458, 849
MhlI GDGCHC 2 cut(s) 1219, 1513
MluCI AATT 7 cut(s) 34, 138, 344, 413, 426, 979, 1608
MlyI GAGTC 3 cut(s) 159, 385, 1585
MmeI TCCRAC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 761
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 5 cut(s) 396, 675, 791, 1362, 1466
MspI CCGG 2 cut(s) 317, 1598
MspR9I CCNGG 1 cut(s) 1189
MunI CAATTG 2 cut(s) 344, 426
Mva1269I GAATGC 4 cut(s) 496, 1031, 1321, 1546
MvaI CCWGG 1 cut(s) 1189
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 7 cut(s) 743, 949, 1085, 1235, 1508, 1513, 1517
NcoI CCATGG 1 cut(s) 1327
NheI GCTAGC 1 cut(s) 1516
NlaIII CATG 9 cut(s) 146, 154, 254, 405, 446, 752, 888, 1223, 1331
NlaIV GGNNCC 1 cut(s) 1643
NmuCI GTSAC 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 761
NspI RCATGY 1 cut(s) 254
NspV TTCGAA 1 cut(s) 868
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 386
PctI GAATGC 4 cut(s) 496, 1031, 1321, 1546
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 6 cut(s) 55, 62, 375, 740, 1350, 1493
PflFI GACNNNGTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 1187
PkrI GCNGC 3 cut(s) 561, 1030, 1522
PleI GAGTC 3 cut(s) 159, 385, 1585
PpsI GAGTC 3 cut(s) 159, 385, 1585
Psp124BI GAGCTC 1 cut(s) 1219
Psp6I CCWGG 1 cut(s) 1187
PspFI CCCAGC 1 cut(s) 1619
PspGI CCWGG 1 cut(s) 1187
PspN4I GGNNCC 1 cut(s) 1643
PspPI GGNCC 2 cut(s) 370, 1191
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 458, 849
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 6 cut(s) 216, 589, 685, 815, 1019, 1045
RsaNI GTAC 6 cut(s) 215, 588, 684, 814, 1018, 1044
SacI GAGCTC 1 cut(s) 1219
SaqAI TTAA 5 cut(s) 396, 675, 791, 1362, 1466
SatI GCNGC 3 cut(s) 560, 1029, 1521
Sau96I GGNCC 2 cut(s) 370, 1191
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 3 cut(s) 159, 385, 1585
ScrFI CCNGG 1 cut(s) 1189
SduI GDGCHC 2 cut(s) 1219, 1513
SfaNI GCATC 6 cut(s) 523, 562, 768, 1075, 1346, 1594
SfuI TTCGAA 1 cut(s) 868
SinI GGWCC 2 cut(s) 370, 1191
Sse9I AATT 7 cut(s) 34, 138, 344, 413, 426, 979, 1608
SsiI CCGC 3 cut(s) 560, 1194, 1439
SspMI CTAG 4 cut(s) 719, 1226, 1517, 1616
SstI GAGCTC 1 cut(s) 1219
StyD4I CCNGG 1 cut(s) 1187
StyI CCWWGG 2 cut(s) 366, 1327
TaaI ACNGT 5 cut(s) 124, 512, 893, 1022, 1048
TaiI ACGT 4 cut(s) 20, 584, 689, 1045
TaqII GACCGA 1 cut(s) 387
TasI AATT 7 cut(s) 34, 138, 344, 413, 426, 979, 1608
TatI WGTACW 2 cut(s) 214, 587
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 6 cut(s) 55, 62, 375, 740, 1350, 1493
Tru1I TTAA 5 cut(s) 396, 675, 791, 1362, 1466
Tru9I TTAA 5 cut(s) 396, 675, 791, 1362, 1466
TscAI CASTG 2 cut(s) 192, 1027
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 2 cut(s) 1028, 1520
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 7 cut(s) 131, 611, 971, 972, 978, 986, 1181
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 192, 1027
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 370, 1191
XapI RAATTY 2 cut(s) 138, 979
XceI RCATGY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 1533
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 4 cut(s) 719, 1226, 1517, 1616
ZrmI AGTACT 1 cut(s) 589
Zsp2I ATGCAT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.