Prupe.1G272200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
27899135 .. 27900757
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G272200.1

Sequence Viewer

Length: 1623 bp
ATGGTCAAGACTGGTCTCGACTGCGTTCCTTTCACATTGAGCAAGCTTCTTGTCTCTTCCATTCATGACATTCAATATGCGGCCTCCATTTTCAACCGCATACAAAACCCAAATCTCTTCATGTTCAATACCATGGTCAGAGGCTATTCCATCAGTGATGATCCAACGCATGCTTTTCGTGTTTTCAATAACTTGAGGGCTCAAAATATCACGCTAGACCAATTCTCTTTCATCACGACGCTCAAAGCTTGCGCTCGTGAATTGGCCATTGGGACCGGTCAAGGGATTCATGGGATTGTTGTGAGGTCTGGGCAGGGGATGTTTGTCAATGTAAAGAATACCCTTTTGCATTTTTACTGTATTTCTAGTAAAATGGAAGATGCACATAAGTTGTTTGATGAGTTTCCTCAAGGAAATGACTTGATTTCATGGAATACTTTGATGGGTGGTTATCTTCATGTGTCTCAGCCTCAAGTGATTGTAGATTTGTTCAAGCAAATGTGTAGGAGCGGTTTTGAAGCTAGTGTTACCACCGTTTTGAACCTTTTGTCTGCCATTGGTGATTTAGGAAGTTACCTTGGAGGAGAGTCTCTTCATGGGTACTGCATCAAGATTGGCTTTTGTTCGGATTTACACGTGCTTACTGCTTTGATTGATACGTATGCAAAGAATGGGCAAATTGATTTAGGACGTCGGATTTTCGATGGAGTTGCTGTGAAGGATGTTGTATTATGGAATTGTTTGGTGGATAAGTATGCAAAATGTGGCCTGGTACAAGATGCAGTAGCTTTGTTGCGGTTGATGAAACTTGAAAGAATGAAACCCAATTCATCTACACTGGCAGGACTGCTTTCGGCTTGTGCTGCTTCTGGGTCTGTAAGTATAGGGAGTTGCATTAAGGATTATGTGGAAGAAGAGAACTTGGTTTTGGATGCGGTTCTTGGAACAGCTCTGGTTGATATGTATGCTAAATGTGGGTTTCTGGAGAAGGCACTTGACATCTTTGAAAGCATGGAAAGCAAAGATGTGAAATCATGGACAGCCATGATTTCGGGTTACGGTGTTCATGGGCAGGCAGGCAATGCCATAAGGCTGTTTTATAGAATGGAAGAGGAGGGGTGCCAACCTAATGAAGTCACTTTCTTGGCAGTGTTAAGTGCTTGCAGCCATGGAGGGCTGGTGACAGAGGGAGTTAGATGTTTTGAGATAATGGTTTGCAAGTATGGATTTGTGCCAAAAGTTGAACACTACGGTTGTATGGTAGATCTTTTGGGTCGTGCAGGATTGCTGGAGGAAGCACATACACTAATTGAAAGCTTGCCCATCAAGAGTGACGCTACGGCATGGCGTGCATTGCTTTCAGCTTGCAGGGTTTATGGGTACGTTGCTCTTGGGGAAACTGTAAAGAGAGTGTTAATACAACTTAATGATGATCATCCCACCAATTCAATGCTATTATCAAGTACTTATGCGATTGCTGGAAGGTTGCCAGATCATACCAGAACACAGGACAGGGAGGATGAAAAGATGGTGAGAGGAGAGAAATTCAGGCCAGTTCGAAAAGAAGAAAACCTGATAAAGGAAGCTGGACGTAGCACAATTGAGATGGATAGTCAAGGTTGA

Protein Analysis

541

Amino Acids

59.53

Weight (kDa)

5.99

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26900
malus_domestica MD13G1073800.v1.1
prunus_persica Prupe.1G272200_v2.0.a1
pyrus_communis pycom16g06510
rosa_chinensis RchiOBHm_Chr4g0440061
rosa_laevigata RLG00000006209
rosa_multiflora Rmu_sc0001685.1_g000003
rosa_rugosa Rorug04G0324000
rosa_samantha Rh4AG374600 Rh4BG387000 Rh4CG401500 Rh4DG381200
rosa_wichuraiana Rw4G032050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 694
AccB1I GGYRCC 1 cut(s) 1119
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 5 cut(s) 80, 97, 510, 796, 935
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 1544
AcvI CACGTG 1 cut(s) 637
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 4 cut(s) 602, 774, 1382, 1465
AfiI CCNNNNNNNGG 2 cut(s) 282, 1579
AflIII ACRYGT 1 cut(s) 634
AgeI ACCGGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 768
AjuI GAANNNNNNNTTGG 4 cut(s) 252, 284, 911, 943
AluBI AGCT 8 cut(s) 46, 248, 521, 788, 950, 1317, 1364, 1586
AluI AGCT 8 cut(s) 46, 248, 521, 788, 950, 1317, 1364, 1586
Alw26I GTCTC 4 cut(s) 20, 58, 468, 594
AlwI GGATC 1 cut(s) 155
AoxI GGCC 4 cut(s) 81, 264, 766, 1550
ApeKI GCWGC 2 cut(s) 863, 1164
ApoI RAATTY 1 cut(s) 1544
AsiGI ACCGGT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 3 cut(s) 572, 1192, 1543
AsuII TTCGAA 1 cut(s) 1558
AvaII GGWCC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 1119
BanII GRGCYC 1 cut(s) 202
BauI CACGAG 1 cut(s) 255
BbrPI CACGTG 1 cut(s) 637
BbvI GCAGC 2 cut(s) 850, 1176
BccI CCATC 6 cut(s) 158, 436, 698, 1331, 1522, 1600
BceAI ACGGC 1 cut(s) 1356
BcgI CGANNNNNNTGC 4 cut(s) 158, 192, 692, 726
BciT130I CCWGG 1 cut(s) 770
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 4 cut(s) 20, 58, 468, 594
BfaI CTAG 3 cut(s) 215, 366, 522
BglII AGATCT 1 cut(s) 1264
BisI GCNGC 3 cut(s) 81, 864, 1165
BlsI GCNGC 3 cut(s) 82, 865, 1166
BmcAI AGTACT 1 cut(s) 1465
Bme1390I CCNGG 1 cut(s) 770
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 274, 1121
BmrFI CCNGG 1 cut(s) 770
BmsI GCATC 4 cut(s) 370, 615, 769, 922
BpmI CTGGAG 2 cut(s) 1004, 1310
Bpu14I TTCGAA 1 cut(s) 1558
BpuEI CTTGAG 3 cut(s) 214, 393, 456
BsaAI YACGTR 2 cut(s) 637, 660
BsaBI GATNNNNATC 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 132, 577, 1168
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 699, 729, 1164, 1194
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 1579
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 3 cut(s) 16, 843, 1553
Bse3DI GCAATG 2 cut(s) 1087, 1352
Bse8I GATNNNNATC 1 cut(s) 1434
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 3 cut(s) 132, 577, 1168
BseGI GGATG 5 cut(s) 324, 727, 937, 1435, 1525
BseJI GATNNNNATC 1 cut(s) 1434
BseLI CCNNNNNNNGG 2 cut(s) 282, 1579
BseMI GCAATG 2 cut(s) 1087, 1352
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 3 cut(s) 16, 843, 1553
BseRI GAGGAG 3 cut(s) 597, 1127, 1551
BseXI GCAGC 2 cut(s) 850, 1176
BsgI GTGCAG 1 cut(s) 1299
BshFI GGCC 4 cut(s) 83, 266, 768, 1552
BshNI GGYRCC 1 cut(s) 1119
BshTI ACCGGT 1 cut(s) 275
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 282, 1579
BsmAI GTCTC 4 cut(s) 20, 58, 468, 594
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 4 cut(s) 83, 266, 768, 1552
Bso31I GGTCTC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 1558
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 4 cut(s) 160, 1264, 1432, 1492
Bsp19I CCATGG 2 cut(s) 132, 1168
BspACI CCGC 5 cut(s) 80, 97, 510, 796, 935
BspANI GGCC 4 cut(s) 83, 266, 768, 1552
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 274, 1121
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 1558
BspT107I GGYRCC 1 cut(s) 1119
BspTNI GGTCTC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 2 cut(s) 1087, 1352
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 3 cut(s) 16, 843, 1553
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 132, 577, 1168
BssMI GATC 4 cut(s) 160, 1264, 1432, 1492
BssNI GRCGYC 1 cut(s) 691
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 3 cut(s) 132, 577, 1168
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 5 cut(s) 359, 535, 1061, 1253, 1402
Bst6I CTCTTC 5 cut(s) 61, 122, 597, 909, 1104
BstACI GRCGYC 1 cut(s) 691
BstAPI GCANNNNNTGC 2 cut(s) 1082, 1349
BstBAI YACGTR 2 cut(s) 637, 660
BstBI TTCGAA 1 cut(s) 1558
BstC8I GCNNGC 9 cut(s) 44, 171, 250, 1074, 1078, 1162, 1319, 1350, 1366
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 2 cut(s) 132, 1168
BstENI CCTNNNNNAGG 1 cut(s) 1577
BstF5I GGATG 5 cut(s) 324, 727, 937, 1435, 1525
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 4 cut(s) 163, 1267, 1435, 1495
BstMAI GTCTC 4 cut(s) 20, 58, 468, 594
BstMBI GATC 4 cut(s) 160, 1264, 1432, 1492
BstMWI GCNNNNNNNGC 5 cut(s) 863, 1017, 1082, 1349, 1354
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 768
BstSNI TACGTA 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 850, 1176
BstX2I RGATCY 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 1264
BsuRI GGCC 4 cut(s) 83, 266, 768, 1552
BtgI CCRYGG 2 cut(s) 132, 1168
BtsCI GGATG 5 cut(s) 324, 727, 937, 1435, 1525
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 3 cut(s) 160, 836, 1155
Cac8I GCNNGC 9 cut(s) 44, 171, 250, 1074, 1078, 1162, 1319, 1350, 1366
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 2 cut(s) 247, 1343
Csp6I GTAC 4 cut(s) 601, 773, 1381, 1464
CspAI ACCGGT 1 cut(s) 275
CviQI GTAC 4 cut(s) 601, 773, 1381, 1464
DdeI CTNAG 1 cut(s) 465
DpnI GATC 4 cut(s) 162, 1266, 1434, 1494
DpnII GATC 4 cut(s) 160, 1264, 1432, 1492
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 5 cut(s) 61, 122, 597, 909, 1104
EarI CTCTTC 5 cut(s) 61, 122, 597, 909, 1104
Eco105I TACGTA 1 cut(s) 660
Eco130I CCWWGG 3 cut(s) 132, 577, 1168
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 1577
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 3 cut(s) 132, 577, 1168
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 3 cut(s) 132, 577, 1168
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 286
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 3 cut(s) 81, 864, 1165
FokI GGATG 5 cut(s) 331, 734, 944, 1422, 1532
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 81, 864, 1165
FspBI CTAG 3 cut(s) 215, 366, 522
GlaI GCGC 1 cut(s) 253
GluI GCNGC 3 cut(s) 81, 864, 1165
GsuI CTGGAG 2 cut(s) 1004, 1310
HaeIII GGCC 4 cut(s) 83, 266, 768, 1552
HapII CCGG 1 cut(s) 276
HgaI GACGC 2 cut(s) 247, 1343
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 691
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 3 cut(s) 44, 246, 1315
HinfI GANTC 2 cut(s) 286, 587
HpaII CCGG 1 cut(s) 276
HphI GGTGA 3 cut(s) 572, 1192, 1543
Hpy188I TCNGA 3 cut(s) 140, 628, 696
Hpy188III TCNNGA 8 cut(s) 7, 17, 65, 235, 257, 610, 983, 1327
Hpy99I CGWCG 2 cut(s) 241, 696
HpyAV CCTTC 3 cut(s) 712, 982, 1476
HpyCH4III ACNGT 5 cut(s) 359, 535, 1061, 1253, 1402
HpyCH4IV ACGT 5 cut(s) 636, 659, 691, 1383, 1591
HpyF10VI GCNNNNNNNGC 5 cut(s) 863, 1017, 1082, 1349, 1354
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 5 cut(s) 636, 659, 691, 1383, 1591
Hsp92I GRCGYC 1 cut(s) 691
HspAI GCGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 4 cut(s) 160, 1264, 1432, 1492
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 2 cut(s) 850, 1176
LweI GCATC 4 cut(s) 370, 615, 769, 922
MaeI CTAG 3 cut(s) 215, 366, 522
MaeII ACGT 5 cut(s) 636, 659, 691, 1383, 1591
MaeIII GTNAC 6 cut(s) 526, 572, 1055, 1135, 1180, 1331
MalI GATC 4 cut(s) 162, 1266, 1434, 1494
MbiI CCGCTC 1 cut(s) 510
MboI GATC 4 cut(s) 160, 1264, 1432, 1492
MboII GAAGA 9 cut(s) 48, 109, 389, 446, 584, 923, 926, 1121, 1577
MfeI CAATTG 1 cut(s) 1599
MflI RGATCY 1 cut(s) 1264
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 9 cut(s) 221, 260, 678, 736, 826, 1308, 1444, 1544, 1599
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 188, 674
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 897, 1154, 1415, 1425
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 770
MunI CAATTG 1 cut(s) 1599
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 5 cut(s) 863, 1017, 1082, 1349, 1354
NcoI CCATGG 2 cut(s) 132, 1168
NdeII GATC 4 cut(s) 160, 1264, 1432, 1492
NlaIV GGNNCC 2 cut(s) 274, 1121
NmuCI GTSAC 3 cut(s) 1135, 1180, 1331
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 1558
PaeI GCATGC 1 cut(s) 173
PagI TCATGA 1 cut(s) 64
PfeI GAWTC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 3 cut(s) 82, 865, 1166
PleI GAGTC 1 cut(s) 595
PmaCI CACGTG 1 cut(s) 637
PmlI CACGTG 1 cut(s) 637
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 2 cut(s) 637, 660
Psp6I CCWGG 1 cut(s) 768
PspCI CACGTG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 2 cut(s) 274, 1121
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 1264
RsaI GTAC 4 cut(s) 602, 774, 1382, 1465
RsaNI GTAC 4 cut(s) 601, 773, 1381, 1464
SaqAI TTAA 4 cut(s) 897, 1154, 1415, 1425
SatI GCNGC 3 cut(s) 81, 864, 1165
Sau3AI GATC 4 cut(s) 160, 1264, 1432, 1492
Sau96I GGNCC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 1465
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 770
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 4 cut(s) 370, 615, 769, 922
SfuI TTCGAA 1 cut(s) 1558
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 193, 408, 471
SmoI CTYRAG 3 cut(s) 193, 408, 471
SnaBI TACGTA 1 cut(s) 660
SphI GCATGC 1 cut(s) 173
Sse9I AATT 9 cut(s) 221, 260, 678, 736, 826, 1308, 1444, 1544, 1599
SsiI CCGC 5 cut(s) 80, 97, 510, 796, 935
SspMI CTAG 3 cut(s) 215, 366, 522
StyD4I CCNGG 1 cut(s) 768
StyI CCWWGG 3 cut(s) 132, 577, 1168
TaaI ACNGT 5 cut(s) 359, 535, 1061, 1253, 1402
TaiI ACGT 5 cut(s) 639, 662, 694, 1386, 1594
TaqI TCGA 3 cut(s) 18, 702, 1558
TasI AATT 9 cut(s) 221, 260, 678, 736, 826, 1308, 1444, 1544, 1599
TatI WGTACW 1 cut(s) 1463
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 4 cut(s) 897, 1154, 1415, 1425
Tru9I TTAA 4 cut(s) 897, 1154, 1415, 1425
TscAI CASTG 3 cut(s) 160, 843, 1155
TseFI GTSAC 3 cut(s) 1135, 1180, 1331
TseI GCWGC 2 cut(s) 863, 1164
Tsp45I GTSAC 3 cut(s) 1135, 1180, 1331
TspRI CASTG 3 cut(s) 160, 843, 1155
VpaK11BI GGWCC 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 1577
XapI RAATTY 1 cut(s) 1544
XceI RCATGY 1 cut(s) 173
XspI CTAG 3 cut(s) 215, 366, 522
ZraI GACGTC 1 cut(s) 692
ZrmI AGTACT 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.