Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017199

Physical Location & Seq

Genomic Coordinates Reverse (-)

5196793 .. 5197858

Gene Structure 1066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1073800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACATTGATAGCCAAGTCGTCACGTCTGGGGCAAAGACTCACACTTTCGCCCACACACAACTCCGTCTTCTTCCAAGATCTCAGCCTCATTTCTCTTTTACCATCCTGCAAAACAGTCTCAGAAATCTCACAGATCCATGGGTCCATGGTCAAGACTGGTCTCGACCACCTTCCTTTTCCCTCCAGCAAGCTTCTCGCCTCTTCCATCCAAGACATCCAATACGCCGCCGCCATTTTCAACCGAATACAAAACCCAAATCTCTTCATGTTTAATACCATGCTCAGAGCCTACTCCATCAGCGATGATCCAAAGCATGCTTTTCATATCTTCAATAACCTGAGAGCTCAGAATATCACGCTGGACCAGTTCTCTTTCGTCGCGACGATCAAAGCCTGCGCTCGTGAATCGGCCATTGGGACCGGCCGAGGGATTCATGGGGTTGTTGTGAGGTCTGGGTTTGGACCGTTTGTCAATGTAAAGAATACCCTTTTGCAGTTTTATTGTAGTTCTGGGAAGATTGAAGATGCCCGGAAGGTGTTTGATGAATTTCCTCAAAGAAATGATTTGGTTTCGTTGAATACTTTGATGGGCGGGTATCTTCATGCGTCTAAGCCTCATGTGGTTGTGGATTTGTTCAAGCAAATGTGTAGAATCGGTTTTGAAGCTACTGTGACCACCGTTTTGAACCTTTTGTCTGCCATTGGTGGTTTAGAGAGTCACCTTGGAGAAGAGTGTATTCATGGCTATTGCATCAAGATTGGATTCTGTTCGGATTTACATGTTCTTACTGCTTTGATTGATGCGTACGCGAAGAAAGGGGAAATCGATTTAGGACGTCGGATTTTCAATGGAGTTTCTGTGAAGGATGTCGTGTTATGGAATTGTTTGGTTGATAAGCATGCAAGATGTGGCATGGTAGAAGAAGCAGTAGCCTTGTTAAGGCTGATGAAACTCGAAGGAATGAAACCGAATTCATCTACATTGGCCGGGGAGTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

335

Amino Acids

36.79

Weight (kDa)

8.68

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	86 - 135	5.9e-07	PPR repeat family
PPR_2	PF13041	289 - 328	3.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26900
malus_domestica	MD13G1073800.v1.1
prunus_persica	Prupe.1G272200_v2.0.a1
pyrus_communis	pycom16g06510
rosa_chinensis	RchiOBHm_Chr4g0440061
rosa_laevigata	RLG00000006209
rosa_multiflora	Rmu_sc0001685.1_g000003
rosa_rugosa	Rorug04G0324000
rosa_samantha	Rh4AG374600 Rh4BG387000 Rh4CG401500 Rh4DG381200
rosa_wichuraiana	Rw4G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	841
AccII	CGCG	2 cut(s)	383, 812
AciI	CCGC	3 cut(s)	228, 231, 594
AclWI	GGATC	2 cut(s)	130, 302
AcoI	YGGCCR	3 cut(s)	411, 424, 987
AcsI	RAATTY	2 cut(s)	548, 973
AcyI	GRCGYC	1 cut(s)	838
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	2 cut(s)	429, 942
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	8 cut(s)	241, 334, 524, 580, 640, 665, 688, 850
AhdI	GACNNNNNGTC	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	193, 347, 668
AluI	AGCT	3 cut(s)	193, 347, 668
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	124, 167
AlwI	GGATC	2 cut(s)	130, 302
AoxI	GGCC	3 cut(s)	411, 424, 987
ApoI	RAATTY	2 cut(s)	548, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	144, 364, 420, 464
AsuC2I	CCSGG	2 cut(s)	532, 991
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	4 cut(s)	144, 364, 420, 464
BanII	GRGCYC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	349
BccI	CCATC	4 cut(s)	112, 215, 305, 583
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcnI	CCSGG	2 cut(s)	532, 991
BcoDI	GTCTC	2 cut(s)	124, 167
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme1390I	CCNGG	2 cut(s)	532, 991
Bme18I	GGWCC	4 cut(s)	144, 364, 420, 464
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	4 cut(s)	144, 364, 420, 464
BmiI	GGNNCC	2 cut(s)	145, 421
BmrFI	CCNGG	2 cut(s)	532, 991
BmsI	GCATC	3 cut(s)	517, 762, 793
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	169
BpuMI	CCSGG	2 cut(s)	532, 991
Bsa29I	ATCGAT	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	838
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	5 cut(s)	139, 147, 427, 724, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 942
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	163, 367
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	5 cut(s)	139, 147, 427, 724, 990
BseGI	GGATG	4 cut(s)	104, 207, 216, 874
BseLI	CCNNNNNNNGG	2 cut(s)	429, 942
BseMII	CTCAG	5 cut(s)	97, 135, 298, 332, 362
BseNI	ACTGG	2 cut(s)	163, 367
BseX3I	CGGCCG	1 cut(s)	424
Bsh1236I	CGCG	2 cut(s)	383, 812
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	413, 426, 989
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	423, 532, 990
BsiWI	CGTACG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	429, 942
BsmAI	GTCTC	2 cut(s)	124, 167
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	413, 426, 989
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	79, 135, 307, 387
Bsp19I	CCATGG	2 cut(s)	139, 147
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	3 cut(s)	228, 231, 594
BspANI	GGCC	3 cut(s)	413, 426, 989
BspCNI	CTCAG	5 cut(s)	96, 134, 297, 333, 361
BspDI	ATCGAT	1 cut(s)	828
BspFNI	CGCG	2 cut(s)	383, 812
BspLI	GGNNCC	2 cut(s)	145, 421
BspPI	GGATC	2 cut(s)	130, 302
BspTNI	GGTCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	163, 367
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	5 cut(s)	139, 147, 427, 724, 990
BssMI	GATC	4 cut(s)	79, 135, 307, 387
BssNI	GRCGYC	1 cut(s)	838
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	3 cut(s)	139, 147, 724
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	4 cut(s)	118, 468, 673, 682
Bst6I	CTCTTC	3 cut(s)	208, 269, 726
BstACI	GRCGYC	1 cut(s)	838
BstC8I	GCNNGC	4 cut(s)	191, 318, 397, 903
BstDEI	CTNAG	6 cut(s)	83, 121, 284, 341, 348, 612
BstDSI	CCRYGG	2 cut(s)	139, 147
BstENI	CCTNNNNNAGG	1 cut(s)	940
BstF5I	GGATG	4 cut(s)	104, 207, 216, 874
BstFNI	CGCG	2 cut(s)	383, 812
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	82, 138, 310, 390
BstMAI	GTCTC	2 cut(s)	124, 167
BstMBI	GATC	4 cut(s)	79, 135, 307, 387
BstMCI	CGRYCG	1 cut(s)	427
BstNSI	RCATGY	3 cut(s)	320, 785, 905
BstSCI	CCNGG	2 cut(s)	530, 989
BstUI	CGCG	2 cut(s)	383, 812
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	79, 135
BstYI	RGATCY	2 cut(s)	79, 135
BstZI	CGGCCG	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	3 cut(s)	413, 426, 989
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	2 cut(s)	139, 147
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	104, 207, 216, 874
BtuMI	TCGCGA	1 cut(s)	383
Cac8I	GCNNGC	4 cut(s)	191, 318, 397, 903
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	4 cut(s)	144, 364, 420, 464
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	808
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	6 cut(s)	83, 121, 284, 341, 348, 612
DpnI	GATC	4 cut(s)	81, 137, 309, 389
DpnII	GATC	4 cut(s)	79, 135, 307, 387
DriI	GACNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	3 cut(s)	411, 424, 987
EagI	CGGCCG	1 cut(s)	424
Eam1104I	CTCTTC	3 cut(s)	208, 269, 726
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	3 cut(s)	208, 269, 726
Ecl136II	GAGCTC	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	139, 147, 724
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	4 cut(s)	144, 364, 420, 464
Eco52I	CGGCCG	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	973
EcoT14I	CCWWGG	3 cut(s)	139, 147, 724
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	3 cut(s)	139, 147, 724
FaqI	GGGAC	1 cut(s)	433
FauI	CCCGC	1 cut(s)	587
Fnu4HI	GCNGC	2 cut(s)	228, 231
FokI	GGATG	4 cut(s)	91, 194, 203, 881
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	2 cut(s)	228, 231
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	2 cut(s)	228, 231
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	413, 426, 989
HapII	CCGG	3 cut(s)	423, 532, 990
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	838
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	6 cut(s)	39, 407, 433, 654, 718, 765
HpaII	CCGG	3 cut(s)	423, 532, 990
HphI	GGTGA	1 cut(s)	713
Hpy188I	TCNGA	5 cut(s)	124, 287, 351, 775, 843
Hpy188III	TCNNGA	5 cut(s)	154, 164, 382, 404, 757
Hpy99I	CGWCG	3 cut(s)	383, 388, 843
HpyAV	CCTTC	4 cut(s)	182, 529, 859, 953
HpyCH4III	ACNGT	4 cut(s)	118, 468, 673, 682
HpyCH4IV	ACGT	2 cut(s)	25, 838
HpyCH4V	TGCA	5 cut(s)	111, 496, 753, 905, 1000
HpyF3I	CTNAG	6 cut(s)	83, 121, 284, 341, 348, 612
HpySE526I	ACGT	2 cut(s)	25, 838
Hsp92I	GRCGYC	1 cut(s)	838
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	79, 135, 307, 387
LweI	GCATC	3 cut(s)	517, 762, 793
MaeII	ACGT	2 cut(s)	25, 838
MaeIII	GTNAC	3 cut(s)	21, 673, 719
MalI	GATC	4 cut(s)	81, 137, 309, 389
MboI	GATC	4 cut(s)	79, 135, 307, 387
MflI	RGATCY	2 cut(s)	79, 135
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	548, 883, 973
MlyI	GAGTC	2 cut(s)	33, 727
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	7 cut(s)	98, 193, 211, 422, 444, 564, 627
MseI	TTAA	3 cut(s)	273, 941, 1003
MspI	CCGG	3 cut(s)	423, 532, 990
MspR9I	CCNGG	2 cut(s)	532, 991
MvnI	CGCG	2 cut(s)	383, 812
NciI	CCSGG	2 cut(s)	532, 991
NcoI	CCATGG	2 cut(s)	139, 147
NdeII	GATC	4 cut(s)	79, 135, 307, 387
NlaIV	GGNNCC	2 cut(s)	145, 421
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	3 cut(s)	21, 673, 719
NruI	TCGCGA	1 cut(s)	383
NspI	RCATGY	3 cut(s)	320, 785, 905
PaeI	GCATGC	2 cut(s)	320, 905
PciI	ACATGT	1 cut(s)	781
PfeI	GAWTC	4 cut(s)	407, 433, 654, 765
Pfl23II	CGTACG	1 cut(s)	807
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	2 cut(s)	33, 726
PpsI	GAGTC	2 cut(s)	33, 726
PscI	ACATGT	1 cut(s)	781
Psp124BI	GAGCTC	1 cut(s)	349
PspLI	CGTACG	1 cut(s)	807
PspN4I	GGNNCC	2 cut(s)	145, 421
PspPI	GGNCC	4 cut(s)	144, 364, 420, 464
PsuI	RGATCY	2 cut(s)	79, 135
RruI	TCGCGA	1 cut(s)	383
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	273, 941, 1003
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	4 cut(s)	79, 135, 307, 387
Sau96I	GGNCC	4 cut(s)	144, 364, 420, 464
SchI	GAGTC	2 cut(s)	33, 727
ScrFI	CCNGG	2 cut(s)	532, 991
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	3 cut(s)	517, 762, 793
SinI	GGWCC	4 cut(s)	144, 364, 420, 464
SphI	GCATGC	2 cut(s)	320, 905
Sse9I	AATT	3 cut(s)	548, 883, 973
SsiI	CCGC	3 cut(s)	228, 231, 594
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	530, 989
StyI	CCWWGG	3 cut(s)	139, 147, 724
TaaI	ACNGT	4 cut(s)	118, 468, 673, 682
TaiI	ACGT	2 cut(s)	28, 841
TaqI	TCGA	3 cut(s)	165, 828, 957
TasI	AATT	3 cut(s)	548, 883, 973
TauI	GCSGC	2 cut(s)	230, 233
TfiI	GAWTC	4 cut(s)	407, 433, 654, 765
Tru1I	TTAA	3 cut(s)	273, 941, 1003
Tru9I	TTAA	3 cut(s)	273, 941, 1003
TseFI	GTSAC	3 cut(s)	21, 673, 719
Tsp45I	GTSAC	3 cut(s)	21, 673, 719
TspDTI	ATGAA	9 cut(s)	256, 314, 425, 561, 593, 731, 965, 966, 980
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	4 cut(s)	144, 364, 420, 464
XagI	CCTNNNNNAGG	1 cut(s)	940
XapI	RAATTY	2 cut(s)	548, 973
XceI	RCATGY	3 cut(s)	320, 785, 905
ZraI	GACGTC	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.