Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007387

Physical Location & Seq

Genomic Coordinates Reverse (-)

49917174 .. 49920824

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATGGCAGCTGGAAAATCTGGAAGTGTCAGGATGCTAGAACCTTCCAAGCCTCCTCCTAGTAAGAGATCTCGTAAGGAGCGAGCCCGGGGTAAATCATCAGGAACGACAAATACCACTGAGCCTATGGAACAACATATTTGGAAAGATTTCCCGGAAGACCTTTATGAAGCTGTCATTGCAAGGCTTCCAATTGCCACATTTTTCCGTTTTCGTTCTGTTTGCAGGAAATGGAATTCATTGCTGGACTCTGAAAGTTTCTCTCAGCAGTGTGCAGAGATCCCACAAGCTAATCCATGGTTTTACACCATCACTCATGAAAACGTGAATTCTGGGGCCATGTATGACCCTTCCTTGAAGAAGTGGCACCATCCCACGATTTCTTCTCTGCCAACAAAGCTGATCGTCTTGCCAGTGGCTTCAGCAGGTGGCCTGGTTTGCTTTCTTGATATTGGTAATAGAAACTTCTACATGTGTAACCCTCTGAATCAATCTTTTAAAGAGTTGCCAGCCAGGTCAGTTAAGGTCTGGTCTCGTATTGCTGTGGGGATGACTCTGAATGGGAGTTCTACCAGTGGGGGCTACAAGATCATGTGGGCGGGTTGTGATGGTGAGTATGAAGTTTATGACTCACTAAGGAACTCTTGGACTAGCCCTGGAAGCATGCCATCAAGTGTTAAGCTTCCACTATCCCTGAATTTCCGATCGCAGGCTGTTACAATTGATAGCACACTTTACTACATGCGGTCAGACCCTGAAGGAATTGTGTCATATGATATGGTCACTGGGGTTTGGAAGCAGTTTATAATTCCCACACCGCTGCATCTGGCTGATCACACACTTGCTGAATGTGGAGGCCGGATCATGCTGGTGGGATTGTTGTCAAAGAATGCTGCTACGTGCGTATGCATTTGGGAGCTGCAGAAAATGACACTTTTGTGGAAGGAGGTTGACAGAATGCCAAATATATGGTGCTTGGAGTTTTACGGCAAGCACGTTAGGATGACTTGCCTGGGTAACAAAGGCTTACTCATGTTGTCCTTGAGGTCGAGACAAATGAACCGCTTGGTTACTTACAATGTTTCGAGCAGGGAATGGCTTAAGGTTCCTGGTTGCGTGGTGCCACATGGGAGGAAGCGGCAATGGATTGCATGTGGCACTTCATTTCATCCATGCCTGACTGCTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

397

Amino Acids

44.69

Weight (kDa)

9.34

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	48 - 87	4.4e-08	F-box domain
FBA_1	PF07734	115 - 322	1.9e-07	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	132 - 317	4.4e-08	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69710 AT1G69710
fragaria_vesca	FvH4_4g31540 FvH4_4g31540
malus_domestica	MD13G1073700.v1.1 MD16G1075000.v1.1
prunus_persica	Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1
pyrus_communis	pycom13g06590
rosa_chinensis	RchiOBHm_Chr4g0440051
rosa_laevigata	RLG00000006210
rosa_roxburghii	Rroxscaffold_5G00380990
rosa_rugosa	Rorug04G0323700 Rorug04G0323800 Rorug04G0323900 Rorug04G0324000 Rorug04G0324000
rosa_samantha	Rh4AG374500 Rh4BG386900 Rh4CG401400 Rh4DG381100
rosa_wichuraiana	Rw4G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	366, 1120
AciI	CCGC	5 cut(s)	599, 745, 818, 1063, 1138
AclWI	GGATC	2 cut(s)	274, 869
AcsI	RAATTY	3 cut(s)	235, 328, 697
AcuI	CTGAAG	2 cut(s)	405, 777
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflII	CTTAAG	1 cut(s)	1100
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	5 cut(s)	432, 512, 655, 1011, 1108
AleI	CACNNNNGTG	1 cut(s)	937
AluBI	AGCT	6 cut(s)	11, 173, 290, 400, 682, 919
AluI	AGCT	6 cut(s)	11, 173, 290, 400, 682, 919
Alw26I	GTCTC	2 cut(s)	537, 1045
AlwI	GGATC	2 cut(s)	274, 869
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	3 cut(s)	336, 430, 856
ApeKI	GCWGC	4 cut(s)	8, 820, 893, 919
ApoI	RAATTY	3 cut(s)	235, 328, 697
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	336
AsuC2I	CCSGG	3 cut(s)	88, 89, 155
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	366, 1120
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	20, 807, 880, 906
BccI	CCATC	4 cut(s)	317, 378, 602, 676
BceAI	ACGGC	1 cut(s)	1003
BciT130I	CCWGG	5 cut(s)	434, 514, 657, 1013, 1110
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	3 cut(s)	88, 89, 155
BcoDI	GTCTC	2 cut(s)	537, 1045
BfaI	CTAG	3 cut(s)	38, 60, 651
BfmI	CTRYAG	1 cut(s)	920
BfrI	CTTAAG	1 cut(s)	1100
BfuAI	ACCTGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	5 cut(s)	9, 821, 894, 920, 1139
BlsI	GCNGC	5 cut(s)	10, 822, 895, 921, 1140
Bme1390I	CCNGG	8 cut(s)	88, 89, 155, 434, 514, 657, 1013, 1110
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	4 cut(s)	337, 368, 1107, 1122
BmrFI	CCNGG	8 cut(s)	88, 89, 155, 434, 514, 657, 1013, 1110
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	2 cut(s)	24, 832
BmuI	ACTGGG	1 cut(s)	795
BpiI	GAAGAC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	1063
BpuMI	CCSGG	3 cut(s)	88, 89, 155
BsaAI	YACGTR	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	537
BsaJI	CCNNGG	5 cut(s)	87, 88, 296, 655, 1012
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	413, 573, 790
Bse3DI	GCAATG	3 cut(s)	177, 239, 1148
BseBI	CCWGG	5 cut(s)	434, 514, 657, 1013, 1110
BseDI	CCNNGG	5 cut(s)	87, 88, 296, 655, 1012
BseGI	GGATG	5 cut(s)	39, 370, 555, 1008, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	3 cut(s)	177, 239, 1148
BseMII	CTCAG	2 cut(s)	111, 278
BseNI	ACTGG	3 cut(s)	413, 573, 790
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	20, 807, 880, 906
BsgI	GTGCAG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	338, 432, 858
BshNI	GGYRCC	2 cut(s)	366, 1120
BsiEI	CGRYCG	1 cut(s)	707
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	3 cut(s)	88, 155, 859
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	537, 1045
BsmI	GAATGC	2 cut(s)	895, 963
BsnI	GGCC	3 cut(s)	338, 432, 858
Bso31I	GGTCTC	1 cut(s)	537
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	5 cut(s)	599, 745, 818, 1063, 1138
BspANI	GGCC	3 cut(s)	338, 432, 858
BspCNI	CTCAG	2 cut(s)	112, 277
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	4 cut(s)	337, 368, 1107, 1122
BspMAI	CTGCAG	1 cut(s)	924
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	2 cut(s)	274, 869
BspT107I	GGYRCC	2 cut(s)	366, 1120
BspTI	CTTAAG	1 cut(s)	1100
BspTNI	GGTCTC	1 cut(s)	537
BsrDI	GCAATG	3 cut(s)	177, 239, 1148
BsrI	ACTGG	3 cut(s)	413, 573, 790
BssECI	CCNNGG	5 cut(s)	87, 88, 296, 655, 1012
BssMI	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	5 cut(s)	434, 514, 657, 1013, 1110
BstAFI	CTTAAG	1 cut(s)	1100
BstBAI	YACGTR	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	84, 510, 665, 711, 992
BstDEI	CTNAG	3 cut(s)	120, 264, 635
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	5 cut(s)	39, 370, 555, 1008, 1168
BstKTI	GATC	7 cut(s)	71, 282, 405, 591, 707, 835, 864
BstMAI	GTCTC	2 cut(s)	537, 1045
BstMBI	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
BstMCI	CGRYCG	1 cut(s)	707
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 397, 438, 660
BstNI	CCWGG	5 cut(s)	434, 514, 657, 1013, 1110
BstNSI	RCATGY	4 cut(s)	475, 667, 745, 1155
BstSCI	CCNGG	8 cut(s)	86, 87, 153, 432, 512, 655, 1011, 1108
BstSFI	CTRYAG	1 cut(s)	920
BstV1I	GCAGC	4 cut(s)	20, 807, 880, 906
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	68, 279
BstXI	CCANNNNNNTGG	1 cut(s)	969
BstYI	RGATCY	2 cut(s)	68, 279
BsuRI	GGCC	3 cut(s)	338, 432, 858
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	5 cut(s)	39, 370, 555, 1008, 1168
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	5 cut(s)	117, 275, 420, 580, 783
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	5 cut(s)	84, 510, 665, 711, 992
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	336
Cfr9I	CCCGGG	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	120, 264, 635
DpnI	GATC	7 cut(s)	70, 281, 404, 590, 706, 834, 863
DpnII	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
DraI	TTTAAA	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	537
Eco57I	CTGAAG	2 cut(s)	405, 777
Eco88I	CYCGRG	1 cut(s)	87
EcoRI	GAATTC	2 cut(s)	235, 328
EcoRII	CCWGG	5 cut(s)	432, 512, 655, 1011, 1108
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	911
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	296
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FauI	CCCGC	1 cut(s)	592
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	5 cut(s)	9, 821, 894, 920, 1139
FokI	GGATG	5 cut(s)	46, 357, 562, 1015, 1155
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	5 cut(s)	9, 821, 894, 920, 1139
FspBI	CTAG	3 cut(s)	38, 60, 651
GluI	GCNGC	5 cut(s)	9, 821, 894, 920, 1139
HaeIII	GGCC	3 cut(s)	338, 432, 858
HapII	CCGG	3 cut(s)	88, 155, 859
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	4 cut(s)	248, 487, 553, 629
HpaII	CCGG	3 cut(s)	88, 155, 859
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	5 cut(s)	253, 486, 558, 704, 751
Hpy188III	TCNNGA	6 cut(s)	21, 31, 102, 317, 446, 1050
Hpy8I	GTNNAC	1 cut(s)	952
HpyAV	CCTTC	4 cut(s)	54, 360, 752, 937
HpyCH4IV	ACGT	3 cut(s)	324, 899, 996
HpyCH4V	TGCA	7 cut(s)	182, 225, 275, 823, 909, 922, 1151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 397, 438, 660
HpyF3I	CTNAG	3 cut(s)	120, 264, 635
HpySE526I	ACGT	3 cut(s)	324, 899, 996
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
LmnI	GCTCC	2 cut(s)	79, 916
Lsp1109I	GCAGC	4 cut(s)	20, 807, 880, 906
LweI	GCATC	2 cut(s)	24, 832
MaeI	CTAG	3 cut(s)	38, 60, 651
MaeII	ACGT	3 cut(s)	324, 899, 996
MaeIII	GTNAC	5 cut(s)	476, 715, 781, 1016, 1069
MalI	GATC	7 cut(s)	70, 281, 404, 590, 706, 834, 863
MboI	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
MboII	GAAGA	3 cut(s)	170, 370, 375
MfeI	CAATTG	2 cut(s)	192, 720
MflI	RGATCY	2 cut(s)	68, 279
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	7 cut(s)	192, 235, 328, 697, 720, 762, 807
MlyI	GAGTC	3 cut(s)	242, 547, 623
MnlI	CCTC	7 cut(s)	63, 66, 492, 848, 940, 1038, 1125
Mph1103I	ATGCAT	1 cut(s)	911
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	4 cut(s)	498, 522, 678, 1101
MslI	CAYNNNNRTG	2 cut(s)	869, 937
MspA1I	CMGCKG	2 cut(s)	11, 820
MspCI	CTTAAG	1 cut(s)	1100
MspI	CCGG	3 cut(s)	88, 155, 859
MspR9I	CCNGG	8 cut(s)	88, 89, 155, 434, 514, 657, 1013, 1110
MunI	CAATTG	2 cut(s)	192, 720
Mva1269I	GAATGC	2 cut(s)	895, 963
MvaI	CCWGG	5 cut(s)	434, 514, 657, 1013, 1110
MwoI	GCNNNNNNNGC	4 cut(s)	179, 397, 438, 660
NciI	CCSGG	3 cut(s)	88, 89, 155
NcoI	CCATGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
NlaIV	GGNNCC	4 cut(s)	337, 368, 1107, 1122
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	911
NspI	RCATGY	4 cut(s)	475, 667, 745, 1155
OliI	CACNNNNGTG	1 cut(s)	937
PaeI	GCATGC	1 cut(s)	667
PagI	TCATGA	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	416
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 993
PctI	GAATGC	2 cut(s)	895, 963
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	10, 822, 895, 921, 1140
Ple19I	CGATCG	1 cut(s)	707
PleI	GAGTC	3 cut(s)	242, 547, 623
PpsI	GAGTC	3 cut(s)	242, 547, 623
Ppu21I	YACGTR	1 cut(s)	900
PscI	ACATGT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	5 cut(s)	432, 512, 655, 1011, 1108
PspGI	CCWGG	5 cut(s)	432, 512, 655, 1011, 1108
PspN4I	GGNNCC	4 cut(s)	337, 368, 1107, 1122
PspPI	GGNCC	1 cut(s)	336
PsrI	GAACNNNNNNTAC	2 cut(s)	97, 129
PstI	CTGCAG	1 cut(s)	924
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	68, 279
PvuI	CGATCG	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	869, 937
SaqAI	TTAA	4 cut(s)	498, 522, 678, 1101
SatI	GCNGC	5 cut(s)	9, 821, 894, 920, 1139
Sau3AI	GATC	7 cut(s)	68, 279, 402, 588, 704, 832, 861
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	3 cut(s)	242, 547, 623
ScrFI	CCNGG	8 cut(s)	88, 89, 155, 434, 514, 657, 1013, 1110
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	24, 832
SfcI	CTRYAG	1 cut(s)	920
SmaI	CCCGGG	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	869, 937
SmlI	CTYRAG	2 cut(s)	1042, 1100
SmoI	CTYRAG	2 cut(s)	1042, 1100
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	7 cut(s)	192, 235, 328, 697, 720, 762, 807
SsiI	CCGC	5 cut(s)	599, 745, 818, 1063, 1138
SspMI	CTAG	3 cut(s)	38, 60, 651
StyD4I	CCNGG	8 cut(s)	86, 87, 153, 432, 512, 655, 1011, 1108
StyI	CCWWGG	1 cut(s)	296
TaiI	ACGT	3 cut(s)	327, 902, 999
TaqI	TCGA	2 cut(s)	1049, 1085
TasI	AATT	7 cut(s)	192, 235, 328, 697, 720, 762, 807
TauI	GCSGC	1 cut(s)	1141
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	498, 522, 678, 1101
Tru9I	TTAA	4 cut(s)	498, 522, 678, 1101
TscAI	CASTG	5 cut(s)	124, 275, 420, 580, 790
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	4 cut(s)	8, 820, 893, 919
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	7 cut(s)	183, 228, 333, 633, 1073, 1152, 1157
TspGWI	ACGGA	1 cut(s)	197
TspMI	CCCGGG	1 cut(s)	87
TspRI	CASTG	5 cut(s)	124, 275, 420, 580, 790
Vha464I	CTTAAG	1 cut(s)	1100
XapI	RAATTY	3 cut(s)	235, 328, 697
XceI	RCATGY	4 cut(s)	475, 667, 745, 1155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmaI	CCCGGG	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	38, 60, 651
Zsp2I	ATGCAT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.