FvH4_4g31540

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007387
Physical Location & Seq
Forward (+)
30624772 .. 30633337
8566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31540.t1

Sequence Viewer

Length: 3039 bp
ATGGCTAGTCCTCGGAGTAGCGGTCCGGCCGACAGGGATATCGACCAGGCCATAGCATCACTTAAGAAAGGTGCGACTTTGTTGAAATATGGGCGCAGAGGGAAGCCGAAATTCTGCCCGTTCCGGCTTTCTAATGATGAGGCTTTACTGATATGGTACTCTGGGAAAGATGAGAAACACATTAGACTTAGTCATGTTTCTACGATTATTCCTGGGCAGCGCACTGCAATATTTCAGCGGTATCCACGACCTGAAAAGGAGTACCAATCATTTTCACTTCTTTACAATGATCGGTCCTTGGACTTGATATGTAAAGACAAGGATGAGGCTGAAGTGTGGTTTGTTGGTCTTAAGGCATTAATTAATCGAGGTTCCTACCGGAATCTTAGAATTGAGTCAAGATCTGACAACAGCATATCAACAGATACCCCTCCTGCTCGTACTCGAAGAAGTTCTCCATCAATTGCACCATTTATCTGTGATGCGGCAGGAGATACTGAGGGAGCTTCATTGGAGAATGCCCCATTGAATAGATTAGGAAGGGCATTTGCTGACATTATATCATATACTGATGCTACCAAGACTCATGCTGAGTCACCTTCTATTTCCTCATTATCACCTGCATCTGTAGATCATTCAAATGGTCGAAGTTCCACATCTGAAGCTGTTCGAATTAGTTTGTCTAGTGCTGTAAGCTCATCAAGTCAAGGTTCTTATCCAGATGACTTTGATGCTTTAGGAGATGTTTTTATATGGGGTGAAGGTATTAATGGTGGAGTACTGGGAGGCAATGTAGATAGAACAGGGAGTTCAATGTCTTCCAGGATGGATGCTCTCCTGCCTAAGGCATTGGAATCAACAATGGTCATAGATGCTCAAGGTATTGCTTGTGGTGCCAGACATATTGTACTGATTACCAGGCAAGGGGAAGTGTTCAGTTGGGGAGAAGAGTCAGGAGGCAGGCTGGGTCATGGTGTAGAAGCAGATGTTTCCCACCCTAAGCTCATTAGCACTCTTAGTGGCATGAATGTTGAACTAGTCGCTTGTGGGGAGCATCATACCTGTGCTGTTACACTTTCTGGAGAGCTCTATACATGGGGTGATGGCGCTAATAATTTTGGTCTACTTGGACATGGAAGTGAAGTTGGTCACTGGATTCCCAAAAAGGTAAGTGGTCATATGGAAGGTATACACATATCATATATCTCTTGCGGACTGTGGCATACAGCTGCTGTGACCTCAGCTGGTCGGTTATTTACATTTGGGGATGGATCCTTTGGTGCTTTAGGCCATGGAGATCATAGTAGCACAAGTACTCCACGGGAGGTGGAAACTTTGAGAGGGCTGAGAACAGCAAGGGTTGCTTGTGGCGCTTGGCACACTGCTGCAGTTGTTGAAACATCAAAGGAATCATCTAGGCCTGAGGATTCTGGTAACTCTGCTTCTGGAAAGCTGTACACCTGGGGGGATGGAGATAAAGGCCGACTTGGACATGGCGATGAAGTTTCTAGACTAGCTCCTGAATGTGTAGCTACATTGGTTGATAAAAATTTCTCTCAAGTAGCATGTGGGCATAGTCTCACAGTTGCCCTTACAACCTCAGGACACGTATATACAATGGGAAGCACTGCTTATGGACAGCTTGGTAGTCCTTCAGCTGATGGAAAAGTTCCCACTCTTGTTGAAGGTAAAATTGCAGATAGCTTCATTGAAGAAATCGCCTGTGGTTCTTGTCATGTGGCAGTTTTGACGTCCAAGGCAGAGGTTTATACTTGGGGAAGGGGTTCAAACGGGCAATTAGGACACGGAGACAATGATGATAGGAGGACACCTACTGTCGTTGAGTTTATTAAAGATAAACAAGTAAAGAGTGTAGTATGTGGTTCAAACCTCACTGCGGCCGTTTGTCTTCATAAATGGGCATCTGGTGCGGACCATTCCGTGTGTGCTAACTGTCATAATTCCTTTGGTTTCAGAAGAAAACGCCATAATTGTTATAATTGTGGTTTAGTTTTCTGTAAAGCGTGCAGCAGCAAGAAAGTTCTGAAAGCTGCCTTGGCTCCAAATGCAAACAAGGCTTATCGGGTATGTGATGATTGTTATGCAAAAGTAAAGAAAGCTGCAGAAGCTAGTTCTGCTGGACGGAATCCCAAAATGAGAAGTGGACAATTATACCATAAATCCGGTGAGATGACAGACAAAGAGACTTTAATGCCTATGTTACGTGCAACACTCTCCAGAATTTCATCTTTTGGCTCAGGCAGTCATATTGAAAGCAAGATTCCTAAGCCTGAAAGAAAACTAGAAGCACATCATAATCGTGTCTTTCCCATGCTAAATGGACATGTGCAGTTAGGGTCCTTTGATTTGTCAAAAGCATCAACTTCCCTTCACAGAGATCCAAGAAAGTTAATGTCAGCTTCCGTGCCTACTTCCAGAAAGTCTTCTCTGTTCACATCTCCTGTTTCAGTAAAGTCAAGTCCCTGTCAGTCTTCTGAAGACATTCTTGAGGACCCAAAGTTAGTAAATGGAAGTTTGAGCCGAGAAATTATCAGTTTAAGGGCACAGGTAGAAGACCTTACTTTTAAATCCCAACAACTCGAAGCTGAACTTCAAAAAACATTGAAGAAGTTGAATGTGGTCTCTGCAGTAGCTAACGATGAAGCTGAAAAATGCAAAACTGCAAAGGAAGTTATCAAGTCTCTAACTGCTCAGTTGAAGGAAAAGGCTGAAAGAATGCCAGAAGGACATGTGACAGGTTCAACTGCTCATTCCATTACTCCTCAAATGGAGCCCAATGGGAATTTAATGGATCGGGTGTTAGCTGATGGAATTAAATCACATAGTGGAAAGGCAGAGCGAGTTCTACAAGAAGAACCTGGCGTGTATATAACTTTATGCTCCTTGCCGGCCGGTGGTAATGAACTGAGACGAGTTCGCTTCAGTCGGAGACATTTCACTGAAGAAGCAGCAGAGAGATGGTGGGCTGATAATGGGGCGAAGTTGTGTGAGCGGCACGGTATACAAGGTGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

1013

Amino Acids

109.07

Weight (kDa)

8.47

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 16 - 122 8.4e-07 Pleckstrin homology domain
WD40_RLD PF25390 248 - 633 2.2e-83 RCC1-like domain
RCC1 PF00415 308 - 357 1.2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 346 - 372 3.6e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 360 - 412 5.2e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 400 - 427 1e-05 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 416 - 464 7.5e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 482 - 531 4.6e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 534 - 583 3.7e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 571 - 599 5.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 588 - 635 3.1e-15 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 639 - 705 3.3e-15 FYVE zinc finger
BRX_N PF13713 887 - 914 1.1e-09 Transcription factor BRX N-terminal domain
BRX PF08381 952 - 1006 1.3e-22 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1998
AarI CACCTGC 1 cut(s) 628
AatII GACGTC 1 cut(s) 1754
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 893
AccBSI CCGCTC 1 cut(s) 3013
AccI GTMKAC 3 cut(s) 1123, 1189, 3022
AciI CCGC 7 cut(s) 21, 238, 485, 1212, 1898, 1931, 3013
AclWI GGATC 4 cut(s) 1266, 1279, 2393, 2820
AcoI YGGCCR 3 cut(s) 27, 1899, 2910
AcsI RAATTY 4 cut(s) 110, 1549, 2241, 2803
AcuI CTGAAG 6 cut(s) 351, 681, 1638, 2517, 2926, 2982
AcyI GRCGYC 1 cut(s) 1751
AdeI CACNNNGTG 1 cut(s) 2846
AfaI GTAC 7 cut(s) 158, 263, 442, 780, 909, 1315, 1457
AfiI CCNNNNNNNGG 4 cut(s) 844, 924, 1897, 2915
AflII CTTAAG 2 cut(s) 62, 350
AflIII ACRYGT 3 cut(s) 1606, 2344, 2749
AhlI ACTAGT 1 cut(s) 1036
AjnI CCWGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
AjuI GAANNNNNNNTTGG 2 cut(s) 2039, 2071
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 7 cut(s) 1583, 1803, 2198, 2647, 2706, 2923, 2944
AlwI GGATC 4 cut(s) 1266, 1279, 2393, 2820
AlwNI CAGNNNCTG 1 cut(s) 1232
AoxI GGCC 7 cut(s) 27, 48, 1288, 1418, 1480, 1899, 2910
ApeKI GCWGC 8 cut(s) 217, 1229, 1385, 2028, 2031, 2051, 2120, 2969
ApoI RAATTY 4 cut(s) 110, 1549, 2241, 2803
AseI ATTAAT 3 cut(s) 359, 363, 768
Asp700I GAANNNNTTC 5 cut(s) 451, 666, 1783, 2443, 2502
AspLEI GCGC 4 cut(s) 96, 222, 1109, 1373
AspS9I GGNCC 5 cut(s) 23, 294, 1933, 2358, 2512
AsuHPI GGTGA 5 cut(s) 588, 609, 770, 1112, 2198
AsuII TTCGAA 1 cut(s) 670
AvaII GGWCC 5 cut(s) 23, 294, 1933, 2358, 2512
AxyI CCTNAGG 3 cut(s) 843, 1422, 1600
BaeGI GKGCMC 1 cut(s) 2566
BamHI GGATCC 1 cut(s) 1271
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 2 cut(s) 1089, 2796
BarI GAAGNNNNNNTAC 2 cut(s) 1426, 1458
BbsI GAAGAC 6 cut(s) 810, 1901, 2436, 2484, 2505, 2580
Bbv12I GWGCWC 1 cut(s) 1089
BbvCI CCTCAGC 1 cut(s) 1240
BbvI GCAGC 8 cut(s) 229, 1216, 1372, 2038, 2040, 2043, 2107, 2981
BccI CCATC 8 cut(s) 466, 820, 1097, 1262, 1463, 1655, 2822, 2973
BceAI ACGGC 1 cut(s) 1886
BciT130I CCWGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 7 cut(s) 1583, 1803, 2198, 2647, 2706, 2923, 2944
BcuI ACTAGT 1 cut(s) 1036
BfaI CTAG 8 cut(s) 6, 684, 1037, 1416, 1509, 1514, 2130, 2303
BfmI CTRYAG 4 cut(s) 627, 1386, 2121, 2646
BfoI RGCGCY 2 cut(s) 1110, 1374
BfrI CTTAAG 2 cut(s) 62, 350
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 1 cut(s) 252
BglII AGATCT 1 cut(s) 401
BmcAI AGTACT 2 cut(s) 780, 1315
Bme1390I CCNGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
Bme18I GGWCC 5 cut(s) 23, 294, 1933, 2358, 2512
BmgT120I GGNCC 5 cut(s) 23, 294, 1933, 2358, 2512
BmiI GGNNCC 7 cut(s) 373, 895, 1273, 2061, 2359, 2514, 2793
BmrFI CCNGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
BmrI ACTGGG 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 6 cut(s) 810, 1901, 2436, 2484, 2505, 2580
BpmI CTGGAG 2 cut(s) 1101, 2221
Bpu10I CCTNAGC 4 cut(s) 999, 1240, 2257, 2286
Bpu14I TTCGAA 1 cut(s) 670
BpuEI CTTGAG 3 cut(s) 861, 1542, 2528
BsaAI YACGTR 2 cut(s) 1609, 2225
BsaHI GRCGYC 1 cut(s) 1751
BsaI GGTCTC 1 cut(s) 2647
BsaJI CCNNGG 8 cut(s) 11, 212, 297, 1291, 1319, 1461, 1755, 2055
BsaWI WCCGGW 2 cut(s) 378, 2183
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 777, 807, 1300, 1330
Bsc4I CCNNNNNNNGG 4 cut(s) 844, 924, 1897, 2915
Bse118I RCCGGY 2 cut(s) 2908, 2912
Bse1I ACTGG 2 cut(s) 786, 1157
Bse21I CCTNAGG 3 cut(s) 843, 1422, 1600
Bse3DI GCAATG 1 cut(s) 796
BseBI CCWGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
BseDI CCNNGG 8 cut(s) 11, 212, 297, 1291, 1319, 1461, 1755, 2055
BseGI GGATG 5 cut(s) 328, 831, 835, 1273, 1474
BseLI CCNNNNNNNGG 4 cut(s) 844, 924, 1897, 2915
BseMI GCAATG 1 cut(s) 796
BseNI ACTGG 2 cut(s) 786, 1157
BseRI GAGGAG 1 cut(s) 2772
BseSI GKGCMC 1 cut(s) 2566
BseX3I CGGCCG 3 cut(s) 27, 1899, 2910
BseXI GCAGC 8 cut(s) 229, 1216, 1372, 2038, 2040, 2043, 2107, 2981
BseYI CCCAGC 1 cut(s) 964
BsgI GTGCAG 2 cut(s) 2047, 2369
Bsh1285I CGRYCG 3 cut(s) 30, 1902, 2913
BshFI GGCC 7 cut(s) 29, 50, 1290, 1420, 1482, 1901, 2912
BshNI GGYRCC 1 cut(s) 893
BsiEI CGRYCG 3 cut(s) 30, 1902, 2913
BsiHKAI GWGCWC 1 cut(s) 1089
BsiSI CCGG 6 cut(s) 26, 124, 379, 2184, 2909, 2913
BslFI GGGAC 1 cut(s) 2466
BslI CCNNNNNNNGG 4 cut(s) 844, 924, 1897, 2915
BsmAI GTCTC 7 cut(s) 1583, 1803, 2198, 2647, 2706, 2923, 2944
BsmBI CGTCTC 1 cut(s) 2923
BsmFI GGGAC 1 cut(s) 2466
BsmI GAATGC 2 cut(s) 523, 2742
BsnI GGCC 7 cut(s) 29, 50, 1290, 1420, 1482, 1901, 2912
Bso31I GGTCTC 1 cut(s) 2647
Bsp119I TTCGAA 1 cut(s) 670
Bsp1286I GDGCHC 3 cut(s) 1089, 2566, 2796
Bsp1407I TGTACA 1 cut(s) 1455
Bsp143I GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
Bsp19I CCATGG 1 cut(s) 1291
BspACI CCGC 7 cut(s) 21, 238, 485, 1212, 1898, 1931, 3013
BspANI GGCC 7 cut(s) 29, 50, 1290, 1420, 1482, 1901, 2912
BspLI GGNNCC 7 cut(s) 373, 895, 1273, 2061, 2359, 2514, 2793
BspMAI CTGCAG 3 cut(s) 1390, 2125, 2650
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 4 cut(s) 1266, 1279, 2393, 2820
BspT104I TTCGAA 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 893
BspTI CTTAAG 2 cut(s) 62, 350
BspTNI GGTCTC 1 cut(s) 2647
BsrBI CCGCTC 1 cut(s) 3013
BsrDI GCAATG 1 cut(s) 796
BsrFI RCCGGY 2 cut(s) 2908, 2912
BsrGI TGTACA 1 cut(s) 1455
BsrI ACTGG 2 cut(s) 786, 1157
BssAI RCCGGY 2 cut(s) 2908, 2912
BssECI CCNNGG 8 cut(s) 11, 212, 297, 1291, 1319, 1461, 1755, 2055
BssMI GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
BssNAI GTATAC 2 cut(s) 1190, 3023
BssNI GRCGYC 1 cut(s) 1751
BssT1I CCWWGG 4 cut(s) 297, 1291, 1755, 2055
Bst1107I GTATAC 2 cut(s) 1190, 3023
Bst2UI CCWGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
Bst4CI ACNGT 5 cut(s) 1218, 1585, 1837, 1955, 3020
Bst6I CTCTTC 1 cut(s) 942
BstACI GRCGYC 1 cut(s) 1751
BstAFI CTTAAG 2 cut(s) 62, 350
BstAPI GCANNNNNTGC 2 cut(s) 1361, 1928
BstAUI TGTACA 1 cut(s) 1455
BstBAI YACGTR 2 cut(s) 1609, 2225
BstBI TTCGAA 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 962, 2026, 2910
BstDSI CCRYGG 2 cut(s) 1291, 1319
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 5 cut(s) 328, 831, 835, 1273, 1474
BstH2I RGCGCY 2 cut(s) 1110, 1374
BstHHI GCGC 4 cut(s) 96, 222, 1109, 1373
BstKTI GATC 7 cut(s) 292, 404, 634, 1274, 1300, 2401, 2815
BstMAI GTCTC 7 cut(s) 1583, 1803, 2198, 2647, 2706, 2923, 2944
BstMBI GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
BstMCI CGRYCG 3 cut(s) 30, 1902, 2913
BstMWI GCNNNNNNNGC 9 cut(s) 893, 1361, 1370, 1928, 2057, 2066, 2075, 2126, 2135
BstNI CCWGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
BstNSI RCATGY 3 cut(s) 1569, 2348, 2753
BstSCI CCNGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
BstSFI CTRYAG 4 cut(s) 627, 1386, 2121, 2646
BstSLI GKGCMC 1 cut(s) 2566
BstV1I GCAGC 8 cut(s) 229, 1216, 1372, 2038, 2040, 2043, 2107, 2981
BstV2I GAAGAC 6 cut(s) 810, 1901, 2436, 2484, 2505, 2580
BstX2I RGATCY 3 cut(s) 401, 1271, 2398
BstYI RGATCY 3 cut(s) 401, 1271, 2398
BstZ17I GTATAC 2 cut(s) 1190, 3023
BstZI CGGCCG 3 cut(s) 27, 1899, 2910
Bsu36I CCTNAGG 3 cut(s) 843, 1422, 1600
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 7 cut(s) 29, 50, 1290, 1420, 1482, 1901, 2912
BtgI CCRYGG 2 cut(s) 1291, 1319
BtgZI GCGATG 1 cut(s) 1512
BtsCI GGATG 5 cut(s) 328, 831, 835, 1273, 1474
BtsI GCAGTG 4 cut(s) 222, 1380, 1626, 1893
BtsIMutI CAGTG 6 cut(s) 222, 1150, 1380, 1626, 1893, 2958
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 3 cut(s) 962, 2026, 2910
CaiI CAGNNNCTG 1 cut(s) 1232
CfoI GCGC 4 cut(s) 96, 222, 1109, 1373
Cfr10I RCCGGY 2 cut(s) 2908, 2912
Cfr13I GGNCC 5 cut(s) 23, 294, 1933, 2358, 2512
CpoI CGGWCCG 1 cut(s) 23
Csp6I GTAC 7 cut(s) 157, 262, 441, 779, 908, 1314, 1456
CspCI CAANNNNNGTGG 2 cut(s) 1663, 1698
CspI CGGWCCG 1 cut(s) 23
CviQI GTAC 7 cut(s) 157, 262, 441, 779, 908, 1314, 1456
DpnI GATC 7 cut(s) 291, 403, 633, 1273, 1299, 2400, 2814
DpnII GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
DraI TTTAAA 1 cut(s) 2587
DraIII CACNNNGTG 1 cut(s) 2846
EaeI YGGCCR 3 cut(s) 27, 1899, 2910
EagI CGGCCG 3 cut(s) 27, 1899, 2910
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
Ecl136II GAGCTC 1 cut(s) 1087
EclXI CGGCCG 3 cut(s) 27, 1899, 2910
Eco130I CCWWGG 4 cut(s) 297, 1291, 1755, 2055
Eco147I AGGCCT 1 cut(s) 1420
Eco24I GRGCYC 2 cut(s) 1089, 2796
Eco31I GGTCTC 1 cut(s) 2647
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 5 cut(s) 23, 294, 1933, 2358, 2512
Eco52I CGGCCG 3 cut(s) 27, 1899, 2910
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 6 cut(s) 351, 681, 1638, 2517, 2926, 2982
Eco81I CCTNAGG 3 cut(s) 843, 1422, 1600
EcoICRI GAGCTC 1 cut(s) 1087
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoO109I RGGNCCY 2 cut(s) 2358, 2512
EcoRII CCWGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 4 cut(s) 297, 1291, 1755, 2055
EcoT38I GRGCYC 2 cut(s) 1089, 2796
ErhI CCWWGG 4 cut(s) 297, 1291, 1755, 2055
Esp3I CGTCTC 1 cut(s) 2923
FaqI GGGAC 1 cut(s) 2466
FauNDI CATATG 1 cut(s) 1179
FblI GTMKAC 3 cut(s) 1123, 1189, 3022
FokI GGATG 5 cut(s) 335, 838, 842, 1280, 1481
FriOI GRGCYC 2 cut(s) 1089, 2796
FspBI CTAG 8 cut(s) 6, 684, 1037, 1416, 1509, 1514, 2130, 2303
GlaI GCGC 4 cut(s) 95, 221, 1108, 1372
GsaI CCCAGC 1 cut(s) 968
GsuI CTGGAG 2 cut(s) 1101, 2221
HaeII RGCGCY 2 cut(s) 1110, 1374
HaeIII GGCC 7 cut(s) 29, 50, 1290, 1420, 1482, 1901, 2912
HapII CCGG 6 cut(s) 26, 124, 379, 2184, 2909, 2913
HhaI GCGC 4 cut(s) 96, 222, 1109, 1373
Hin1I GRCGYC 1 cut(s) 1751
Hin6I GCGC 4 cut(s) 94, 220, 1107, 1371
HinP1I GCGC 4 cut(s) 94, 220, 1107, 1371
HpaII CCGG 6 cut(s) 26, 124, 379, 2184, 2909, 2913
HphI GGTGA 5 cut(s) 588, 609, 770, 1112, 2198
Hpy166II GTNNAC 6 cut(s) 1124, 1190, 1458, 2165, 2454, 3023
Hpy188I TCNGA 7 cut(s) 15, 406, 661, 1976, 2046, 2497, 2949
Hpy8I GTNNAC 6 cut(s) 1124, 1190, 1458, 2165, 2454, 3023
HpyCH4III ACNGT 5 cut(s) 1218, 1585, 1837, 1955, 3020
HpyCH4IV ACGT 3 cut(s) 1608, 1751, 2224
HpyF10VI GCNNNNNNNGC 9 cut(s) 893, 1361, 1370, 1928, 2057, 2066, 2075, 2126, 2135
HpySE526I ACGT 3 cut(s) 1608, 1751, 2224
Hsp92I GRCGYC 1 cut(s) 1751
HspAI GCGC 4 cut(s) 94, 220, 1107, 1371
KroI GCCGGC 1 cut(s) 2908
KroNI GCCGGC 1 cut(s) 2910
Kzo9I GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
LmnI GCTCC 6 cut(s) 503, 1051, 1522, 2065, 2791, 2906
Lsp1109I GCAGC 8 cut(s) 229, 1216, 1372, 2038, 2040, 2043, 2107, 2981
MaeI CTAG 8 cut(s) 6, 684, 1037, 1416, 1509, 1514, 2130, 2303
MaeII ACGT 3 cut(s) 1608, 1751, 2224
MaeIII GTNAC 7 cut(s) 594, 1069, 1148, 1234, 1433, 2220, 2752
MalI GATC 7 cut(s) 291, 403, 633, 1273, 1299, 2400, 2814
MbiI CCGCTC 1 cut(s) 3013
MboI GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 3 cut(s) 401, 1271, 2398
MhlI GDGCHC 3 cut(s) 1089, 2566, 2796
MlyI GAGTC 4 cut(s) 404, 577, 602, 959
MmeI TCCRAC 1 cut(s) 2927
MroNI GCCGGC 1 cut(s) 2908
MroXI GAANNNNTTC 5 cut(s) 451, 666, 1783, 2443, 2502
MslI CAYNNNNRTG 5 cut(s) 639, 1062, 1137, 1497, 2319
MspA1I CMGCKG 4 cut(s) 238, 1229, 1244, 1658
MspCI CTTAAG 2 cut(s) 62, 350
MspI CCGG 6 cut(s) 26, 124, 379, 2184, 2909, 2913
MspR9I CCNGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 2 cut(s) 523, 2742
MvaI CCWGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
MwoI GCNNNNNNNGC 9 cut(s) 893, 1361, 1370, 1928, 2057, 2066, 2075, 2126, 2135
NaeI GCCGGC 1 cut(s) 2910
NcoI CCATGG 1 cut(s) 1291
NdeI CATATG 1 cut(s) 1179
NdeII GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
NgoMIV GCCGGC 1 cut(s) 2908
NlaIV GGNNCC 7 cut(s) 373, 895, 1273, 2061, 2359, 2514, 2793
NmeAIII GCCGAG 1 cut(s) 2567
NmuCI GTSAC 4 cut(s) 594, 1148, 1234, 2752
NspI RCATGY 3 cut(s) 1569, 2348, 2753
NspV TTCGAA 1 cut(s) 670
PacI TTAATTAA 1 cut(s) 363
PaqCI CACCTGC 1 cut(s) 628
PceI AGGCCT 1 cut(s) 1420
PciI ACATGT 2 cut(s) 2344, 2749
PctI GAATGC 2 cut(s) 523, 2742
PdiI GCCGGC 1 cut(s) 2910
PdmI GAANNNNTTC 5 cut(s) 451, 666, 1783, 2443, 2502
PfeI GAWTC 7 cut(s) 382, 854, 1156, 1409, 1427, 2146, 2281
PflFI GACNNNGTC 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 821
PleI GAGTC 4 cut(s) 403, 577, 601, 958
PpsI GAGTC 4 cut(s) 403, 577, 601, 958
Ppu21I YACGTR 2 cut(s) 1609, 2225
PpuMI RGGWCCY 2 cut(s) 2358, 2512
PscI ACATGT 2 cut(s) 2344, 2749
PshBI ATTAAT 3 cut(s) 359, 363, 768
PsiI TTATAA 1 cut(s) 1998
Psp124BI GAGCTC 1 cut(s) 1089
Psp5II RGGWCCY 2 cut(s) 2358, 2512
Psp6I CCWGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
PspN4I GGNNCC 7 cut(s) 373, 895, 1273, 2061, 2359, 2514, 2793
PspPI GGNCC 5 cut(s) 23, 294, 1933, 2358, 2512
PspPPI RGGWCCY 2 cut(s) 2358, 2512
PstI CTGCAG 3 cut(s) 1390, 2125, 2650
PstNI CAGNNNCTG 1 cut(s) 1232
PsuI RGATCY 3 cut(s) 401, 1271, 2398
PsyI GACNNNGTC 1 cut(s) 189
PvuII CAGCTG 3 cut(s) 1229, 1244, 1658
RsaI GTAC 7 cut(s) 158, 263, 442, 780, 909, 1315, 1457
RsaNI GTAC 7 cut(s) 157, 262, 441, 779, 908, 1314, 1456
RseI CAYNNNNRTG 5 cut(s) 639, 1062, 1137, 1497, 2319
Rsr2I CGGWCCG 1 cut(s) 23
RsrII CGGWCCG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 1089
Sau3AI GATC 7 cut(s) 289, 401, 631, 1271, 1297, 2398, 2812
Sau96I GGNCC 5 cut(s) 23, 294, 1933, 2358, 2512
ScaI AGTACT 2 cut(s) 780, 1315
SchI GAGTC 4 cut(s) 404, 577, 602, 959
ScrFI CCNGG 6 cut(s) 47, 213, 823, 919, 1462, 2880
SduI GDGCHC 3 cut(s) 1089, 2566, 2796
SfcI CTRYAG 4 cut(s) 627, 1386, 2121, 2646
SfuI TTCGAA 1 cut(s) 670
SinI GGWCC 5 cut(s) 23, 294, 1933, 2358, 2512
SmiMI CAYNNNNRTG 5 cut(s) 639, 1062, 1137, 1497, 2319
SmlI CTYRAG 5 cut(s) 62, 350, 876, 1557, 2507
SmoI CTYRAG 5 cut(s) 62, 350, 876, 1557, 2507
SpeI ACTAGT 1 cut(s) 1036
SseBI AGGCCT 1 cut(s) 1420
SsiI CCGC 7 cut(s) 21, 238, 485, 1212, 1898, 1931, 3013
SspI AATATT 1 cut(s) 231
SspMI CTAG 8 cut(s) 6, 684, 1037, 1416, 1509, 1514, 2130, 2303
SstI GAGCTC 1 cut(s) 1089
StuI AGGCCT 1 cut(s) 1420
StyD4I CCNGG 6 cut(s) 45, 211, 821, 917, 1460, 2878
StyI CCWWGG 4 cut(s) 297, 1291, 1755, 2055
TaaI ACNGT 5 cut(s) 1218, 1585, 1837, 1955, 3020
TaiI ACGT 3 cut(s) 1611, 1754, 2227
TaqI TCGA 6 cut(s) 42, 367, 445, 646, 670, 2601
TaqII GACCGA 1 cut(s) 282
TatI WGTACW 4 cut(s) 778, 907, 1313, 1455
TauI GCSGC 3 cut(s) 488, 1901, 3016
TfiI GAWTC 7 cut(s) 382, 854, 1156, 1409, 1427, 2146, 2281
TscAI CASTG 6 cut(s) 229, 1157, 1387, 1633, 1900, 2965
TseFI GTSAC 4 cut(s) 594, 1148, 1234, 2752
TseI GCWGC 8 cut(s) 217, 1229, 1385, 2028, 2031, 2051, 2120, 2969
Tsp45I GTSAC 4 cut(s) 594, 1148, 1234, 2752
TspDTI ATGAA 8 cut(s) 498, 1040, 1515, 1696, 1901, 2235, 2676, 2937
TspGWI ACGGA 4 cut(s) 1821, 1930, 2158, 2413
TspRI CASTG 6 cut(s) 229, 1157, 1387, 1633, 1900, 2965
Tth111I GACNNNGTC 1 cut(s) 189
Vha464I CTTAAG 2 cut(s) 62, 350
VpaK11BI GGWCC 5 cut(s) 23, 294, 1933, 2358, 2512
VspI ATTAAT 3 cut(s) 359, 363, 768
XagI CCTNNNNNAGG 1 cut(s) 842
XapI RAATTY 4 cut(s) 110, 1549, 2241, 2803
XbaI TCTAGA 1 cut(s) 1508
XceI RCATGY 3 cut(s) 1569, 2348, 2753
XmiI GTMKAC 3 cut(s) 1123, 1189, 3022
XmnI GAANNNNTTC 5 cut(s) 451, 666, 1783, 2443, 2502
XspI CTAG 8 cut(s) 6, 684, 1037, 1416, 1509, 1514, 2130, 2303
ZraI GACGTC 1 cut(s) 1752
ZrmI AGTACT 2 cut(s) 780, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.