Rh4CG401400

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007387
Physical Location & Seq
Forward (+)
64970237 .. 64977190
6954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG401400.1

Sequence Viewer

Length: 2649 bp
ATGGCTAGTCCTCAGAGAATCGGTCCGGCCGACAGGGATATCGACCAGGCCATAGCGGCGCTTAAGAAAGGCGCGACTTTGTTAAAATACGGGCGCAGAGGGAAGCCGAAATTCTGCCCTTTCCGGCTTTCTAATGATGAGGCTTTACTGATATGGTACTCTGGAAAAGAAGAGAAACATGTTAGACTTAGTCATGTTACTACCATTATTCCTGGGCAGCGTACTGCAATATTTCAGCGGTATCCACGACCAGAAAAGGAGTACCAATCATTTTCTCTTCTTTACAATGATAGATCCTTGGACTTGATATGTAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTACTCGAGGTTCCTACCGGCATTTTAGAAGTGAGTCAAGAAGTGACAACAGTGTATCAACAGATACCCCCCTTGCTCATACTCGAAGAAGTTCTCCATCAATCGCACCATTCACCTGTACACAACAGGATGCTGCAGGAGATACTGAGGGACTTCCTTTGGAGACTGCCCCAACAAATAGATTAGGAAGGGCATTTGCTGACATAATATCATATACTGATGCTACCAAGACTCAAGCTGAGTCACCTCCTATTTCCTCATTATCACCTGCATCTGTAGATAATTCAAATGGTCGAAGTTCCACATCTGAAGCAATTCGAATTAGTTTATCTAGTGCCGTAAGCTCATCAAGTCAAGGTTCTTGTCCAGATGACTTTGATGCTTTAGGAGATGTTTTTATTTGGGGTGAAAGTATTAATGGTGGAGTACTAGGAGGCAATGTAGATAGAATAGGAAGATCAGTTTCTTCCAGTATGGATGCTCTCCTGCCCAAGGCATTGGAATCAACAGTGGTCATAGATGCTCATGGAATTGCTTGTGGTACCAGACATATTGCACTGGTCACCAGGCAAGGGGAAATTTTCAGTTGGGGAGAGGAGTCAGGAGGCAGGCTGGGTCATGGTGTAGGAGCAGATGTTTCCCACCCTAAGCTCATTGGCACTCTTAGTGGCATGAATGTTGAATTAGTTGCTTGTGGGGAGTATCATACCTGTGCTGTTACAATTTCTGGAGAGCTCTATACATGGGGTGATGGCACTAATAATTTTGGTCTACTTGGACATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAGATAAGTGGTCATATGGAAGGTATACACATATCCTATATCTCTTGCGGACTGTGGCATACAGCTGCTGTGACCTCAGCTGGTCGGTTATTTACATTTGGGGATGGTTCTTTTGGTGCTTTAGGCCATGGAGATCATAGTAGCACAAGTACTCCACGAGAGGTGGAAACTTTGAGAGGGCTGAGAACAGCAAGGGTTGCTTGTGGCGCTTGGCACACTGCTGCAGTTGTTGCAATAATAAAGGAATCATATATGTCTGAGGATTCTGGTAACTCTGCTTTTGGAAAGCTGTACACCTGGGGCGATGGAGATAAAGGCCGACTTGGACATGGCGATGAAGTTTCTAGACTAGCTCCTGAATGTGTAGCTGCATTGGTTAATAAAAATTTCTGTCAAGTAGCATGTGGGCATAGTCTCACAGTTGCCCTTACAACATCAGGACATGTATATACAATGGGAAGCGCTGCTTGTGGACAGCTTGGCAATCCTTCAGCTGATGGAAAAGTTCCCACTCGTGTTGAAGGTACAATTGCAGATAGCTTCGTCGAAGAAATCGCCTGTGGTTCTTGTCATGTGGCAGTTTTGACTTCCAAGACAGAGGTTTATACTTGGGGAAGGGGTTCAAATGGGCAATTAGGACACGGAGACAATGATAATAGAAAGACACCTACTCTCGTTGAATTTATGAAGGATAAACAAGTAAAGAGTGTAGTATGTGGTTCAAACCTTACTGCAGTCATTTGTCTTCATAAATGGGCATCTGGTGCTGACCATTCCGTTTGCTCTAATTGTCATAATCCCTTTGGTTTCAGAAGAAAACGTCATAATTGTTATAATTGTGGGTTAGTTTTCTGTAAAGCATGCAGCAGCAAGAAAGTTCTGAGAGCTGCCTTGGCTCCAAATGTGAACAAGCCCTATCGGGTGTGTGATGATTGTTATACTAAACTAAAGAAAGCTGCAGAAGCTAGTTCTATGGTACGAAATCCCAAAATTAGAAGTGGACATGTACACCATAAATCCTGTGAGACGGCAGACAAAGAGACTCTAATGCCTATGTTACGGGCAACACTGTCCAGAATTTCATCCTTTGGCTCAGGCAACCATACTGAAAGCAAGATTCCTAAGCCTGAAAGAAAACCAGAAGCGCGTGATAATCGTGTCTTTCCAATGCTAAATGGACATTTGCAGTTAGGGGCCTTTACTTTGTCAAAAGCATCAACTTCCCTTAATGGAGATCCAGGAAAGTTCATGTCAGCGTCCATGCCTACTTCCAGAAAGTCTTCTGTGTTTGCATCTCCTGTTTCAGGAAAGTCAAGCCCACGTCAGTCTTCTGAAGACATTCTTGAGGACCCAAAGTTAGTAAATGGAAGTTTGAGCCGAGAAATTATCAGTTTAAGGGCACAGGTATGCCTGTTACAGTGCTTTAATGGCTGCAATCTCATATTTATTAATTGCATACACAGGCAAGTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

882

Amino Acids

94.84

Weight (kDa)

8.66

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 16 - 121 2.3e-06 Pleckstrin homology domain
WD40_RLD PF25390 251 - 636 6.3e-80 RCC1-like domain
RCC1 PF00415 311 - 360 6.6e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 349 - 374 3.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 363 - 415 1.7e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 403 - 430 8.6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 419 - 467 6.4e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 486 - 534 1.5e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 537 - 586 9.5e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 574 - 602 4.4e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 591 - 638 3e-15 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 642 - 708 2.6e-16 FYVE zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2007
AarI CACCTGC 1 cut(s) 637
Acc36I ACCTGC 1 cut(s) 637
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 902
AccI GTMKAC 2 cut(s) 1132, 1198
AccII CGCG 2 cut(s) 74, 2320
AciI CCGC 3 cut(s) 56, 238, 1221
AclWI GGATC 2 cut(s) 288, 2402
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 5 cut(s) 110, 939, 1558, 1853, 2250
AcuI CTGAAG 4 cut(s) 351, 690, 1647, 2526
AfeI AGCGCT 1 cut(s) 1636
AfiI CCNNNNNNNGG 3 cut(s) 853, 933, 2477
AflII CTTAAG 2 cut(s) 62, 350
AflIII ACRYGT 3 cut(s) 178, 1615, 2176
AgsI TTSAA 6 cut(s) 648, 1043, 1694, 1797, 1853, 1896
AjiI CACGTC 1 cut(s) 2495
AjnI CCWGG 5 cut(s) 45, 211, 926, 1469, 2410
Alw21I GWGCWC 1 cut(s) 1098
Alw26I GTCTC 5 cut(s) 518, 1592, 1812, 2192, 2207
AlwI GGATC 2 cut(s) 288, 2402
AlwNI CAGNNNCTG 1 cut(s) 1241
Ama87I CYCGRG 1 cut(s) 366
Aor51HI AGCGCT 1 cut(s) 1636
AoxI GGCC 5 cut(s) 27, 48, 1297, 1489, 2367
ApoI RAATTY 5 cut(s) 110, 939, 1558, 1853, 2250
AseI ATTAAT 3 cut(s) 359, 777, 2622
Asp700I GAANNNNTTC 5 cut(s) 451, 675, 1792, 2452, 2511
Asp718I GGTACC 1 cut(s) 902
AspLEI GCGC 6 cut(s) 61, 74, 96, 1382, 1637, 2320
AspS9I GGNCC 3 cut(s) 23, 2367, 2521
AsuHPI GGTGA 6 cut(s) 466, 597, 618, 779, 916, 1121
AsuII TTCGAA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 23, 2521
BaeGI GKGCMC 1 cut(s) 2575
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 1098
BauI CACGAG 2 cut(s) 1329, 1686
BbsI GAAGAC 4 cut(s) 1910, 2445, 2493, 2514
Bbv12I GWGCWC 1 cut(s) 1098
BbvCI CCTCAGC 1 cut(s) 1249
BccI CCATC 5 cut(s) 466, 1106, 1271, 1472, 1664
BceAI ACGGC 2 cut(s) 683, 2217
BciT130I CCWGG 5 cut(s) 47, 213, 928, 1471, 2412
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 5 cut(s) 518, 1592, 1812, 2192, 2207
BfaI CTAG 6 cut(s) 6, 693, 791, 1518, 1523, 2139
BfmI CTRYAG 5 cut(s) 495, 636, 1395, 1905, 2130
BfoI RGCGCY 3 cut(s) 62, 1383, 1638
BfrI CTTAAG 2 cut(s) 62, 350
BfuAI ACCTGC 1 cut(s) 637
BfuI GTATCC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 56
BmcAI AGTACT 2 cut(s) 789, 1324
Bme1390I CCNGG 5 cut(s) 47, 213, 928, 1471, 2412
Bme18I GGWCC 2 cut(s) 23, 2521
BmeT110I CYCGRG 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 2495
BmgT120I GGNCC 3 cut(s) 23, 2367, 2521
BmiI GGNNCC 5 cut(s) 373, 904, 2070, 2368, 2523
BmrFI CCNGG 5 cut(s) 47, 213, 928, 1471, 2412
BmsI GCATC 9 cut(s) 481, 571, 641, 730, 829, 871, 1940, 2396, 2474
BpiI GAAGAC 4 cut(s) 1910, 2445, 2493, 2514
BpmI CTGGAG 1 cut(s) 1110
Bpu10I CCTNAGC 4 cut(s) 1008, 1249, 2266, 2295
Bpu14I TTCGAA 1 cut(s) 679
BpuEI CTTGAG 2 cut(s) 579, 2537
BsaJI CCNNGG 6 cut(s) 212, 297, 852, 1300, 1470, 2064
BsaXI ACNNNNNCTCC 6 cut(s) 786, 816, 981, 1011, 1309, 1339
Bsc4I CCNNNNNNNGG 3 cut(s) 853, 933, 2477
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 831, 924, 1166
Bse3DI GCAATG 1 cut(s) 805
BseBI CCWGG 5 cut(s) 47, 213, 928, 1471, 2412
BseDI CCNNGG 6 cut(s) 212, 297, 852, 1300, 1470, 2064
BseGI GGATG 5 cut(s) 328, 496, 844, 1282, 2255
BseLI CCNNNNNNNGG 3 cut(s) 853, 933, 2477
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 8 cut(s) 26, 498, 591, 1263, 1346, 1422, 2045, 2280
BseNI ACTGG 3 cut(s) 831, 924, 1166
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 1 cut(s) 2575
BseX3I CGGCCG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 973
Bsh1236I CGCG 2 cut(s) 74, 2320
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 5 cut(s) 29, 50, 1299, 1491, 2369
BshNI GGYRCC 1 cut(s) 902
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 1098
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 3 cut(s) 26, 124, 379
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 3 cut(s) 853, 933, 2477
BsmAI GTCTC 5 cut(s) 518, 1592, 1812, 2192, 2207
BsmBI CGTCTC 1 cut(s) 2192
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 5 cut(s) 29, 50, 1299, 1491, 2369
BsoBI CYCGRG 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 679
Bsp1286I GDGCHC 2 cut(s) 1098, 2575
Bsp1407I TGTACA 3 cut(s) 479, 1464, 2179
Bsp143I GATC 4 cut(s) 293, 818, 1306, 2407
Bsp19I CCATGG 1 cut(s) 1300
BspACI CCGC 3 cut(s) 56, 238, 1221
BspANI GGCC 5 cut(s) 29, 50, 1299, 1491, 2369
BspCNI CTCAG 8 cut(s) 25, 499, 592, 1262, 1347, 1423, 2046, 2279
BspFNI CGCG 2 cut(s) 74, 2320
BspLI GGNNCC 5 cut(s) 373, 904, 2070, 2368, 2523
BspMAI CTGCAG 4 cut(s) 499, 1399, 1909, 2134
BspMI ACCTGC 1 cut(s) 637
BspPI GGATC 2 cut(s) 288, 2402
BspT104I TTCGAA 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 902
BspTI CTTAAG 2 cut(s) 62, 350
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 1 cut(s) 378
BsrGI TGTACA 3 cut(s) 479, 1464, 2179
BsrI ACTGG 3 cut(s) 831, 924, 1166
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 6 cut(s) 212, 297, 852, 1300, 1470, 2064
BssMI GATC 4 cut(s) 293, 818, 1306, 2407
BssNAI GTATAC 1 cut(s) 1199
BssSI CACGAG 2 cut(s) 1329, 1686
BssT1I CCWWGG 4 cut(s) 297, 852, 1300, 2064
Bst1107I GTATAC 1 cut(s) 1199
Bst2BI CACGAG 2 cut(s) 1329, 1686
Bst2UI CCWGG 5 cut(s) 47, 213, 928, 1471, 2412
Bst4CI ACNGT 6 cut(s) 413, 871, 1227, 1594, 2244, 2592
Bst6I CTCTTC 2 cut(s) 165, 282
BstAFI CTTAAG 2 cut(s) 62, 350
BstAPI GCANNNNNTGC 3 cut(s) 1370, 1403, 1937
BstAUI TGTACA 3 cut(s) 479, 1464, 2179
BstBI TTCGAA 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 971, 2035
BstDSI CCRYGG 1 cut(s) 1300
BstEII GGTNACC 1 cut(s) 922
BstENI CCTNNNNNAGG 2 cut(s) 851, 2475
BstF5I GGATG 5 cut(s) 328, 496, 844, 1282, 2255
BstFNI CGCG 2 cut(s) 74, 2320
BstH2I RGCGCY 3 cut(s) 62, 1383, 1638
BstHHI GCGC 6 cut(s) 61, 74, 96, 1382, 1637, 2320
BstKTI GATC 4 cut(s) 296, 821, 1309, 2410
BstMAI GTCTC 5 cut(s) 518, 1592, 1812, 2192, 2207
BstMBI GATC 4 cut(s) 293, 818, 1306, 2407
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 8 cut(s) 56, 1370, 1379, 1403, 1937, 2066, 2135, 2601
BstNI CCWGG 5 cut(s) 47, 213, 928, 1471, 2412
BstNSI RCATGY 5 cut(s) 182, 1578, 1619, 2037, 2180
BstPI GGTNACC 1 cut(s) 922
BstSCI CCNGG 5 cut(s) 45, 211, 926, 1469, 2410
BstSFI CTRYAG 5 cut(s) 495, 636, 1395, 1905, 2130
BstSLI GKGCMC 1 cut(s) 2575
BstUI CGCG 2 cut(s) 74, 2320
BstV2I GAAGAC 4 cut(s) 1910, 2445, 2493, 2514
BstX2I RGATCY 2 cut(s) 293, 2407
BstXI CCANNNNNNTGG 1 cut(s) 859
BstYI RGATCY 2 cut(s) 293, 2407
BstZ17I GTATAC 1 cut(s) 1199
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 5 cut(s) 29, 50, 1299, 1491, 2369
BtgI CCRYGG 1 cut(s) 1300
BtgZI GCGATG 2 cut(s) 1491, 1521
BtrI CACGTC 1 cut(s) 2495
BtsCI GGATG 5 cut(s) 328, 496, 844, 1282, 2255
BtsI GCAGTG 1 cut(s) 1389
BtsIMutI CAGTG 7 cut(s) 418, 876, 917, 1159, 1389, 2240, 2597
BveI ACCTGC 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 971, 2035
CaiI CAGNNNCTG 1 cut(s) 1241
CfoI GCGC 6 cut(s) 61, 74, 96, 1382, 1637, 2320
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 23, 2367, 2521
CpoI CGGWCCG 1 cut(s) 23
CseI GACGC 1 cut(s) 2418
CspCI CAANNNNNGTGG 2 cut(s) 1672, 1707
CspI CGGWCCG 1 cut(s) 23
DpnI GATC 4 cut(s) 295, 820, 1308, 2409
DpnII GATC 4 cut(s) 293, 818, 1306, 2407
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 165, 282
EarI CTCTTC 2 cut(s) 165, 282
Ecl136II GAGCTC 1 cut(s) 1096
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 4 cut(s) 297, 852, 1300, 2064
Eco24I GRGCYC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 23, 2521
Eco47III AGCGCT 1 cut(s) 1636
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 4 cut(s) 351, 690, 1647, 2526
Eco88I CYCGRG 1 cut(s) 366
Eco91I GGTNACC 1 cut(s) 922
EcoICRI GAGCTC 1 cut(s) 1096
EcoNI CCTNNNNNAGG 2 cut(s) 851, 2475
EcoO109I RGGNCCY 2 cut(s) 2367, 2521
EcoO65I GGTNACC 1 cut(s) 922
EcoRII CCWGG 5 cut(s) 45, 211, 926, 1469, 2410
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 4 cut(s) 297, 852, 1300, 2064
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 4 cut(s) 297, 852, 1300, 2064
Esp3I CGTCTC 1 cut(s) 2192
FalI AAGNNNNNCTT 8 cut(s) 1357, 1389, 1479, 1511, 1624, 1656, 2499, 2531
FaqI GGGAC 1 cut(s) 525
FauNDI CATATG 1 cut(s) 1188
FblI GTMKAC 2 cut(s) 1132, 1198
FokI GGATG 5 cut(s) 335, 503, 851, 1289, 2242
FriOI GRGCYC 1 cut(s) 1098
FspBI CTAG 6 cut(s) 6, 693, 791, 1518, 1523, 2139
GlaI GCGC 6 cut(s) 60, 73, 95, 1381, 1636, 2319
GsaI CCCAGC 1 cut(s) 977
GsuI CTGGAG 1 cut(s) 1110
HaeII RGCGCY 3 cut(s) 62, 1383, 1638
HaeIII GGCC 5 cut(s) 29, 50, 1299, 1491, 2369
HapII CCGG 3 cut(s) 26, 124, 379
HgaI GACGC 1 cut(s) 2418
HhaI GCGC 6 cut(s) 61, 74, 96, 1382, 1637, 2320
Hin6I GCGC 6 cut(s) 59, 72, 94, 1380, 1635, 2318
HinP1I GCGC 6 cut(s) 59, 72, 94, 1380, 1635, 2318
HpaII CCGG 3 cut(s) 26, 124, 379
HphI GGTGA 6 cut(s) 466, 597, 618, 779, 916, 1121
Hpy166II GTNNAC 8 cut(s) 482, 1133, 1199, 1467, 1646, 2080, 2174, 2182
Hpy188I TCNGA 6 cut(s) 15, 670, 1432, 1985, 2055, 2506
Hpy8I GTNNAC 8 cut(s) 482, 1133, 1199, 1467, 1646, 2080, 2174, 2182
Hpy99I CGWCG 1 cut(s) 1721
HpyAV CCTTC 6 cut(s) 543, 1187, 1671, 1688, 1782, 1855
HpyCH4III ACNGT 6 cut(s) 413, 871, 1227, 1594, 2244, 2592
HpyCH4IV ACGT 2 cut(s) 1993, 2494
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 1370, 1379, 1403, 1937, 2066, 2135, 2601
HpySE526I ACGT 2 cut(s) 1993, 2494
HspAI GCGC 6 cut(s) 59, 72, 94, 1380, 1635, 2318
KpnI GGTACC 1 cut(s) 906
Kzo9I GATC 4 cut(s) 293, 818, 1306, 2407
LmnI GCTCC 3 cut(s) 989, 1531, 2074
LweI GCATC 9 cut(s) 481, 571, 641, 730, 829, 871, 1940, 2396, 2474
MaeI CTAG 6 cut(s) 6, 693, 791, 1518, 1523, 2139
MaeII ACGT 2 cut(s) 1993, 2494
MalI GATC 4 cut(s) 295, 820, 1308, 2409
MboI GATC 4 cut(s) 293, 818, 1306, 2407
MfeI CAATTG 1 cut(s) 1701
MflI RGATCY 2 cut(s) 293, 2407
MhlI GDGCHC 2 cut(s) 1098, 2575
MlyI GAGTC 5 cut(s) 404, 586, 611, 968, 2209
MroXI GAANNNNTTC 5 cut(s) 451, 675, 1792, 2452, 2511
MslI CAYNNNNRTG 4 cut(s) 1071, 1146, 1506, 2578
MspA1I CMGCKG 4 cut(s) 238, 1238, 1253, 1667
MspCI CTTAAG 2 cut(s) 62, 350
MspI CCGG 3 cut(s) 26, 124, 379
MspR9I CCNGG 5 cut(s) 47, 213, 928, 1471, 2412
MunI CAATTG 1 cut(s) 1701
MvaI CCWGG 5 cut(s) 47, 213, 928, 1471, 2412
MvnI CGCG 2 cut(s) 74, 2320
MwoI GCNNNNNNNGC 8 cut(s) 56, 1370, 1379, 1403, 1937, 2066, 2135, 2601
NcoI CCATGG 1 cut(s) 1300
NdeI CATATG 1 cut(s) 1188
NdeII GATC 4 cut(s) 293, 818, 1306, 2407
NlaIV GGNNCC 5 cut(s) 373, 904, 2070, 2368, 2523
NmeAIII GCCGAG 1 cut(s) 2576
NmuCI GTSAC 5 cut(s) 404, 603, 922, 1157, 1243
NspI RCATGY 5 cut(s) 182, 1578, 1619, 2037, 2180
NspV TTCGAA 1 cut(s) 679
PaeI GCATGC 1 cut(s) 2037
PaeR7I CTCGAG 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 637
PciI ACATGT 3 cut(s) 178, 1615, 2176
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 5 cut(s) 451, 675, 1792, 2452, 2511
PfeI GAWTC 6 cut(s) 18, 863, 1165, 1418, 1436, 2290
PflFI GACNNNGTC 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 2410
PleI GAGTC 5 cut(s) 403, 586, 610, 967, 2209
PpsI GAGTC 5 cut(s) 403, 586, 610, 967, 2209
PpuMI RGGWCCY 1 cut(s) 2521
PscI ACATGT 3 cut(s) 178, 1615, 2176
PshBI ATTAAT 3 cut(s) 359, 777, 2622
PsiI TTATAA 1 cut(s) 2007
Psp124BI GAGCTC 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 2521
Psp6I CCWGG 5 cut(s) 45, 211, 926, 1469, 2410
PspEI GGTNACC 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 973
PspGI CCWGG 5 cut(s) 45, 211, 926, 1469, 2410
PspN4I GGNNCC 5 cut(s) 373, 904, 2070, 2368, 2523
PspPI GGNCC 3 cut(s) 23, 2367, 2521
PspPPI RGGWCCY 1 cut(s) 2521
PspXI VCTCGAGB 1 cut(s) 366
PstI CTGCAG 4 cut(s) 499, 1399, 1909, 2134
PstNI CAGNNNCTG 1 cut(s) 1241
PsuI RGATCY 2 cut(s) 293, 2407
PsyI GACNNNGTC 1 cut(s) 189
PvuII CAGCTG 3 cut(s) 1238, 1253, 1667
RseI CAYNNNNRTG 4 cut(s) 1071, 1146, 1506, 2578
Rsr2I CGGWCCG 1 cut(s) 23
RsrII CGGWCCG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 1098
Sau3AI GATC 4 cut(s) 293, 818, 1306, 2407
Sau96I GGNCC 3 cut(s) 23, 2367, 2521
ScaI AGTACT 2 cut(s) 789, 1324
SchI GAGTC 5 cut(s) 404, 586, 611, 968, 2209
ScrFI CCNGG 5 cut(s) 47, 213, 928, 1471, 2412
SduI GDGCHC 2 cut(s) 1098, 2575
SfaNI GCATC 9 cut(s) 481, 571, 641, 730, 829, 871, 1940, 2396, 2474
SfcI CTRYAG 5 cut(s) 495, 636, 1395, 1905, 2130
Sfr274I CTCGAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 679
SinI GGWCC 2 cut(s) 23, 2521
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 4 cut(s) 1071, 1146, 1506, 2578
SmlI CTYRAG 5 cut(s) 62, 350, 366, 594, 2516
SmoI CTYRAG 5 cut(s) 62, 350, 366, 594, 2516
SphI GCATGC 1 cut(s) 2037
SsiI CCGC 3 cut(s) 56, 238, 1221
SspI AATATT 1 cut(s) 231
SspMI CTAG 6 cut(s) 6, 693, 791, 1518, 1523, 2139
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 5 cut(s) 45, 211, 926, 1469, 2410
StyI CCWWGG 4 cut(s) 297, 852, 1300, 2064
TaaI ACNGT 6 cut(s) 413, 871, 1227, 1594, 2244, 2592
TaiI ACGT 2 cut(s) 1996, 2497
TaqI TCGA 6 cut(s) 42, 367, 445, 655, 679, 1719
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 5 cut(s) 479, 787, 1322, 1464, 2179
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 6 cut(s) 18, 863, 1165, 1418, 1436, 2290
TscAI CASTG 7 cut(s) 418, 876, 924, 1166, 1396, 2247, 2597
TseFI GTSAC 5 cut(s) 404, 603, 922, 1157, 1243
Tsp45I GTSAC 5 cut(s) 404, 603, 922, 1157, 1243
TspDTI ATGAA 6 cut(s) 1049, 1524, 1874, 1910, 2244, 2410
TspGWI ACGGA 2 cut(s) 1830, 1939
TspRI CASTG 7 cut(s) 418, 876, 924, 1166, 1396, 2247, 2597
Tth111I GACNNNGTC 1 cut(s) 189
Vha464I CTTAAG 2 cut(s) 62, 350
VpaK11BI GGWCC 2 cut(s) 23, 2521
VspI ATTAAT 3 cut(s) 359, 777, 2622
XagI CCTNNNNNAGG 2 cut(s) 851, 2475
XapI RAATTY 5 cut(s) 110, 939, 1558, 1853, 2250
XbaI TCTAGA 1 cut(s) 1517
XceI RCATGY 5 cut(s) 182, 1578, 1619, 2037, 2180
XhoI CTCGAG 1 cut(s) 366
XmiI GTMKAC 2 cut(s) 1132, 1198
XmnI GAANNNNTTC 5 cut(s) 451, 675, 1792, 2452, 2511
XspI CTAG 6 cut(s) 6, 693, 791, 1518, 1523, 2139
ZrmI AGTACT 2 cut(s) 789, 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.