Rh4AG374500

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007387
Physical Location & Seq
Forward (+)
68179171 .. 68184859
5689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG374500.1

Sequence Viewer

Length: 2931 bp
ATGGCTAGTCCTCAGAGAATCGGTCCGGCCGACAGGGATATCGACCAGGCAATATTTCAGCGGTATCCACGACCAGAAAAGGAGTACCAATCATTTTCTCTTCTTTACAATGATAGATCCTTGGACTTGATATGTAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTACTCGAGGTTCCTACCGGCATTTTAGAAGTGAGTCCAGAAGTGACAACAGTGTATCAACAGATACCCCCCTTGCTCATACTCGAAGAAGTTCTCCATCAATCGCACCATTCACCTGTACACAACAGGATGCTGCAGGAGATACTGAGGGACTTCCTTTGGAGACTGCCCCAACAAATAGATTAGGAAGGGCATTTGCTGACATAATATCATATACTGATGCTACCAAGACTCAAGCTGAGTCACCTCCTATTTCCTCATTATCACCTGCATCTGTAGATAATTCAAATGGTCGAAGTTCCACATCTGAAGCAATTCGAATTAGTTTATCTAGTGCCGTAAGCTCATCAAGTCAAGGTTCTTGTCCAGATGACTTTGATGCTTTAGGAGATGTTTTTATTTGGGGTGAAAGTATTAATGGTGGAGTACTAGGAGGCAATGTAGATAGAATAGGAAGATCAGTTTCTTCCAGTATGGATGCTCTCCTGCCCAAGGCATTGGAATCAACAGTGGTCATAGATGCTCATGGAATTGCTTGTGGTACCAGACATATTGCACTGGTCACCAGGCAAGGGGAAATTTTCAGTTGGGGAGAGGAGTCAGGAGGCAGGCTGGGTCATGGTGTAGGAGCAGATGTTTCCCACCCTAAGCTCATTGGCACTCTTAGTGGCATGAATGTTGAATTAGTCGCTTGTGGGGAGTATCATACCTGTGCTGTTACAATTTCTGGAGAGCTCTATACATGGGGTGATGGCACTAATAATTTTGGTCTACTTGGACATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAAATAAGTGGTCATATGGAAGGTATACACATATCCTATATCTCTTGCGGACTGTGGCATACAGCTGCTGTGACCTCAGCTGGTCGGTTATTTACATTTGGGGATGGTTCTTTTGGTGCTTTAGGCCATGGAGATCATAGTAGCACAAGTACTCCACGAGAGGTGGAAACTTTGAGAGGGCTGAGAACGGCAAGGGTTGCTTGTGGCGCTTGGCACACTGCTGCAGTTGTTGCAATAATAAAGGAATCATATATGTCTGAGGATTCTGGTAACTCTGCTTTTGGAAAGCTCTACACCTGGGGTGATGGAGATAAAGGCCGACTTGGACATGGCGATGAAGTTTCTAGACTAGCTCCTGAATGTGTAGCTGCATTGGTTAATACAAATTTCTGTCAAGTAGCATGTGGGCATAGTCTCACAGTTGCCCTTACAACATCAGGACATGTATATACAATGGGAAGCGCTGCTTGTGGACAGCTTGGCAATCCTTCAGCTGATGGAAAAGTTCCCACTCGTGTTGAAGGTACAATTGCAGATAGCTTCGTCGAAGAAATCGCCTGTGGTTCTTGTCATGTGGCAGTTTTGACTTCCAAGACAGAGGTTTATACTTGGGGAAGGGGTTCAAATGGGCAATTAGGACACGGAGACAATGATAATAGAAAGGCACCTACTCTCGTTGAGTTTATGAAGGATAAACAAGTAAAGAGTGTAGTATGTGGTTCAAACCTTACTGCGGTCATTTGTCTTCATAAATGGGCATCTGGTGCTGACCATTCCGTTTGCTCTAATTGTCATAATCCCTTTGGTTTCAGAAGAAAACGTCATAATTGTTATAATTGTGGGTTAGTTTTCTGTAAAGCATGCAGCAGCAAGAAAGTTCTGAGAGCTGCCTTGGCTCCAAATGTGAACAAGCCCTATCGGGTGTGTGATGATTGTTATACTAAACTAAAGAAAGCTGCAGAAGCTAGTTCTGTTGTACGAAATCCCAAAATTAGAAGTGGACATGTACACCATAAATCCAGTGAGACGGCAGACAAAGAGACTCTAATGCCTATGTTACGGGCAACACTGTCCAGAATTTCATCCTTCGGCTCAGGCAACCATACTGAAAGCAAGATTCCTAAGCCTGAAAGAAAACCAGAAGCGCGTGATAATCGTGTCTTTCCAATGCTAAATGGACATTTGCAGTTAGGGGCCTTTACTTTGTCAAAAGCATCAACTTCCCTTGATGGAGATCCAGGAAAGTTCATGTCAGCGTCCATGCCTACTTCCAGAAAGTCTTCTGTGTTTGCATCTCCTGTTTCAGGAAAGTCAAGCCCACATCAGTCTTCTGAAGACATTCTTGAGGACCCAAAGTTAGTAAATGGAAGTTTGAGCCGAGAAATTATCAGTTTAAGGGCACAGGTAGAAGACCTTACTTTCAAATCCCAACGACTTGAAGCTGAACTTCAAAGAACATTAAAGAAATTGAACGAGGTCTCTGCAGTAGCTACCGATGAAGCTGAAAAATGCAAATCTGCTAAGGAAGTTATCAAGTCTCTAACTGCTCAGTTGAAGGAGATGGCTGAAAGAATGCCAGAAGGACATGTTGCAAGTTGCAATGCAGGTTCAACTGCTCATGCCATCACTTTTGTAAATCAGTTATCCAAAGAGAACCCTCAGACAAATATGACTACTCCTCAAATGGAGTCCAATGGCAATTCAATGGATCGGATCTTAGGGAATGGAACTAAATCACAGAGTGGAAAGGTAGAGCGAGTTCTACAAGATGAACCTGGTGTCTATATAACTTTGTGCTCCTTGCCGGGCGGTGGTAATGAACTCAGACGTGTTCGCTTCAGTCGGAGACATTTCACTGAAGAAGCAGCAGAGAGATGGTGGGCAGATAATGGCGCAATGTTGTGCGAGCGGCACAATATACAAAGTGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

976

Amino Acids

104.98

Weight (kDa)

7.19

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 192 - 577 2.1e-79 RCC1-like domain
RCC1 PF00415 252 - 301 7.5e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 290 - 315 4e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 304 - 356 1.9e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 344 - 371 9.6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 360 - 408 7.2e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 427 - 475 2.7e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 478 - 527 1.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 515 - 543 5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 532 - 579 7e-15 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 583 - 649 3e-16 FYVE zinc finger
BRX_N PF13713 831 - 858 4.8e-13 Transcription factor BRX N-terminal domain
BRX PF08381 917 - 970 2.1e-22 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1830
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 2 cut(s) 460, 2591
Acc65I GGTACC 1 cut(s) 725
AccB1I GGYRCC 2 cut(s) 725, 1660
AccBSI CCGCTC 1 cut(s) 2905
AccI GTMKAC 2 cut(s) 955, 1021
AccII CGCG 1 cut(s) 2143
AciI CCGC 5 cut(s) 61, 1044, 1730, 2805, 2905
AclWI GGATC 4 cut(s) 111, 2225, 2712, 2717
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 762, 1381, 2073
AcuI CTGAAG 6 cut(s) 174, 513, 1470, 2349, 2818, 2874
AdeI CACNNNGTG 1 cut(s) 2738
AfaI GTAC 8 cut(s) 86, 304, 612, 727, 1147, 1522, 1974, 2004
AfeI AGCGCT 1 cut(s) 1459
AfiI CCNNNNNNNGG 5 cut(s) 676, 756, 1729, 2300, 2807
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 4 cut(s) 1438, 1999, 2581, 2824
AjiI CACGTC 1 cut(s) 2825
AjnI CCWGG 5 cut(s) 45, 749, 1292, 2233, 2770
Alw21I GWGCWC 2 cut(s) 921, 2795
Alw26I GTCTC 8 cut(s) 341, 1415, 1635, 2015, 2030, 2479, 2538, 2836
AlwI GGATC 4 cut(s) 111, 2225, 2712, 2717
AlwNI CAGNNNCTG 1 cut(s) 1064
Ama87I CYCGRG 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 1459
AoxI GGCC 4 cut(s) 27, 1120, 1312, 2190
ApoI RAATTY 3 cut(s) 762, 1381, 2073
AseI ATTAAT 2 cut(s) 182, 600
Asp700I GAANNNNTTC 5 cut(s) 274, 498, 1615, 2275, 2334
Asp718I GGTACC 1 cut(s) 725
AspLEI GCGC 4 cut(s) 1205, 1460, 2143, 2891
AspS9I GGNCC 3 cut(s) 23, 2190, 2344
AsuC2I CCSGG 1 cut(s) 2802
AsuHPI GGTGA 7 cut(s) 289, 420, 441, 602, 739, 944, 1310
AsuII TTCGAA 1 cut(s) 502
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 23, 2344
BaeGI GKGCMC 1 cut(s) 2398
BanI GGYRCC 2 cut(s) 725, 1660
BanII GRGCYC 1 cut(s) 921
BauI CACGAG 2 cut(s) 1152, 1509
BbsI GAAGAC 5 cut(s) 1733, 2268, 2316, 2337, 2412
Bbv12I GWGCWC 2 cut(s) 921, 2795
BbvCI CCTCAGC 1 cut(s) 1072
BccI CCATC 9 cut(s) 289, 929, 1094, 1295, 1487, 2219, 2551, 2627, 2865
BceAI ACGGC 3 cut(s) 506, 1200, 2040
BcgI CGANNNNNNTGC 2 cut(s) 2459, 2493
BciT130I CCWGG 5 cut(s) 47, 751, 1294, 2235, 2772
BciVI GTATCC 1 cut(s) 75
BcnI CCSGG 1 cut(s) 2802
BcoDI GTCTC 8 cut(s) 341, 1415, 1635, 2015, 2030, 2479, 2538, 2836
BfaI CTAG 6 cut(s) 6, 516, 614, 1341, 1346, 1962
BfmI CTRYAG 5 cut(s) 318, 459, 1218, 1953, 2478
BfoI RGCGCY 2 cut(s) 1206, 1461
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 2 cut(s) 460, 2591
BfuI GTATCC 1 cut(s) 75
BmcAI AGTACT 2 cut(s) 612, 1147
Bme1390I CCNGG 6 cut(s) 47, 751, 1294, 2235, 2772, 2802
Bme18I GGWCC 2 cut(s) 23, 2344
BmeT110I CYCGRG 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 2825
BmgT120I GGNCC 3 cut(s) 23, 2190, 2344
BmiI GGNNCC 6 cut(s) 196, 727, 1662, 1893, 2191, 2346
BmrFI CCNGG 6 cut(s) 47, 751, 1294, 2235, 2772, 2802
BmsI GCATC 9 cut(s) 304, 394, 464, 553, 652, 694, 1763, 2219, 2297
BpiI GAAGAC 5 cut(s) 1733, 2268, 2316, 2337, 2412
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 5 cut(s) 831, 1072, 2089, 2118, 2517
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 402, 2360
BpuMI CCSGG 1 cut(s) 2802
BsaBI GATNNNNATC 1 cut(s) 2229
BsaI GGTCTC 1 cut(s) 2479
BsaJI CCNNGG 5 cut(s) 120, 675, 1123, 1293, 1887
BsaXI ACNNNNNCTCC 6 cut(s) 609, 639, 804, 834, 1132, 1162
Bsc4I CCNNNNNNNGG 5 cut(s) 676, 756, 1729, 2300, 2807
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 4 cut(s) 654, 747, 989, 2016
Bse3DI GCAATG 3 cut(s) 628, 2602, 2898
Bse8I GATNNNNATC 1 cut(s) 2229
BseBI CCWGG 5 cut(s) 47, 751, 1294, 2235, 2772
BseDI CCNNGG 5 cut(s) 120, 675, 1123, 1293, 1887
BseGI GGATG 5 cut(s) 151, 319, 667, 1105, 2078
BseJI GATNNNNATC 1 cut(s) 2229
BseLI CCNNNNNNNGG 5 cut(s) 676, 756, 1729, 2300, 2807
BseMI GCAATG 3 cut(s) 628, 2602, 2898
BseNI ACTGG 4 cut(s) 654, 747, 989, 2016
BseRI GAGGAG 2 cut(s) 794, 2664
BseSI GKGCMC 1 cut(s) 2398
BseX3I CGGCCG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 796
Bsh1236I CGCG 1 cut(s) 2143
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 29, 1122, 1314, 2192
BshNI GGYRCC 2 cut(s) 725, 1660
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 921, 2795
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 3 cut(s) 26, 202, 2801
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 5 cut(s) 676, 756, 1729, 2300, 2807
BsmAI GTCTC 8 cut(s) 341, 1415, 1635, 2015, 2030, 2479, 2538, 2836
BsmBI CGTCTC 1 cut(s) 2015
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 2574
BsnI GGCC 4 cut(s) 29, 1122, 1314, 2192
Bso31I GGTCTC 1 cut(s) 2479
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 921, 2398, 2795
Bsp1407I TGTACA 2 cut(s) 302, 2002
Bsp143I GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
Bsp19I CCATGG 1 cut(s) 1123
BspACI CCGC 5 cut(s) 61, 1044, 1730, 2805, 2905
BspANI GGCC 4 cut(s) 29, 1122, 1314, 2192
BspFNI CGCG 1 cut(s) 2143
BspLI GGNNCC 6 cut(s) 196, 727, 1662, 1893, 2191, 2346
BspMAI CTGCAG 4 cut(s) 322, 1222, 1957, 2482
BspMI ACCTGC 2 cut(s) 460, 2591
BspPI GGATC 4 cut(s) 111, 2225, 2712, 2717
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 2 cut(s) 725, 1660
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 2479
BsrBI CCGCTC 1 cut(s) 2905
BsrDI GCAATG 3 cut(s) 628, 2602, 2898
BsrFI RCCGGY 1 cut(s) 201
BsrGI TGTACA 2 cut(s) 302, 2002
BsrI ACTGG 4 cut(s) 654, 747, 989, 2016
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 5 cut(s) 120, 675, 1123, 1293, 1887
BssMI GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
BssNAI GTATAC 1 cut(s) 1022
BssSI CACGAG 2 cut(s) 1152, 1509
BssT1I CCWWGG 4 cut(s) 120, 675, 1123, 1887
Bst1107I GTATAC 1 cut(s) 1022
Bst2BI CACGAG 2 cut(s) 1152, 1509
Bst2UI CCWGG 5 cut(s) 47, 751, 1294, 2235, 2772
Bst4CI ACNGT 5 cut(s) 236, 694, 1050, 1417, 2067
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 3 cut(s) 1193, 1226, 1760
BstAUI TGTACA 2 cut(s) 302, 2002
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 794, 1858, 2903
BstDSI CCRYGG 1 cut(s) 1123
BstEII GGTNACC 1 cut(s) 745
BstENI CCTNNNNNAGG 2 cut(s) 674, 2298
BstF5I GGATG 5 cut(s) 151, 319, 667, 1105, 2078
BstFNI CGCG 1 cut(s) 2143
BstH2I RGCGCY 2 cut(s) 1206, 1461
BstHHI GCGC 4 cut(s) 1205, 1460, 2143, 2891
BstKTI GATC 6 cut(s) 119, 644, 1132, 2233, 2707, 2712
BstMAI GTCTC 8 cut(s) 341, 1415, 1635, 2015, 2030, 2479, 2538, 2836
BstMBI GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 1193, 1202, 1226, 1760, 1889, 1958
BstNI CCWGG 5 cut(s) 47, 751, 1294, 2235, 2772
BstNSI RCATGY 5 cut(s) 1401, 1442, 1860, 2003, 2585
BstPI GGTNACC 1 cut(s) 745
BstSCI CCNGG 6 cut(s) 45, 749, 1292, 2233, 2770, 2800
BstSFI CTRYAG 5 cut(s) 318, 459, 1218, 1953, 2478
BstSLI GKGCMC 1 cut(s) 2398
BstUI CGCG 1 cut(s) 2143
BstV2I GAAGAC 5 cut(s) 1733, 2268, 2316, 2337, 2412
BstX2I RGATCY 3 cut(s) 116, 2230, 2709
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 3 cut(s) 116, 2230, 2709
BstZ17I GTATAC 1 cut(s) 1022
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 4 cut(s) 29, 1122, 1314, 2192
BtgI CCRYGG 1 cut(s) 1123
BtgZI GCGATG 1 cut(s) 1344
BtrI CACGTC 1 cut(s) 2825
BtsCI GGATG 5 cut(s) 151, 319, 667, 1105, 2078
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 8 cut(s) 241, 699, 740, 982, 1212, 2023, 2063, 2850
BveI ACCTGC 2 cut(s) 460, 2591
Cac8I GCNNGC 3 cut(s) 794, 1858, 2903
CaiI CAGNNNCTG 1 cut(s) 1064
CfoI GCGC 4 cut(s) 1205, 1460, 2143, 2891
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 23, 2190, 2344
CpoI CGGWCCG 1 cut(s) 23
CseI GACGC 1 cut(s) 2241
CsiI ACCWGGT 1 cut(s) 2770
Csp6I GTAC 8 cut(s) 85, 303, 611, 726, 1146, 1521, 1973, 2003
CspCI CAANNNNNGTGG 2 cut(s) 1495, 1530
CspI CGGWCCG 1 cut(s) 23
CviQI GTAC 8 cut(s) 85, 303, 611, 726, 1146, 1521, 1973, 2003
DpnI GATC 6 cut(s) 118, 643, 1131, 2232, 2706, 2711
DpnII GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
DraIII CACNNNGTG 1 cut(s) 2738
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 919
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 4 cut(s) 120, 675, 1123, 1887
Eco24I GRGCYC 1 cut(s) 921
Eco31I GGTCTC 1 cut(s) 2479
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 23, 2344
Eco47III AGCGCT 1 cut(s) 1459
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 919
Eco57I CTGAAG 6 cut(s) 174, 513, 1470, 2349, 2818, 2874
Eco88I CYCGRG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 919
EcoNI CCTNNNNNAGG 2 cut(s) 674, 2298
EcoO109I RGGNCCY 2 cut(s) 2190, 2344
EcoO65I GGTNACC 1 cut(s) 745
EcoRII CCWGG 5 cut(s) 45, 749, 1292, 2233, 2770
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 4 cut(s) 120, 675, 1123, 1887
EcoT38I GRGCYC 1 cut(s) 921
ErhI CCWWGG 4 cut(s) 120, 675, 1123, 1887
Esp3I CGTCTC 1 cut(s) 2015
FaqI GGGAC 1 cut(s) 348
FauNDI CATATG 1 cut(s) 1011
FblI GTMKAC 2 cut(s) 955, 1021
FokI GGATG 5 cut(s) 158, 326, 674, 1112, 2065
FriOI GRGCYC 1 cut(s) 921
FspBI CTAG 6 cut(s) 6, 516, 614, 1341, 1346, 1962
GlaI GCGC 4 cut(s) 1204, 1459, 2142, 2890
GsaI CCCAGC 1 cut(s) 800
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 2 cut(s) 1206, 1461
HaeIII GGCC 4 cut(s) 29, 1122, 1314, 2192
HapII CCGG 3 cut(s) 26, 202, 2801
HgaI GACGC 1 cut(s) 2241
HhaI GCGC 4 cut(s) 1205, 1460, 2143, 2891
Hin6I GCGC 4 cut(s) 1203, 1458, 2141, 2889
HinP1I GCGC 4 cut(s) 1203, 1458, 2141, 2889
HpaII CCGG 3 cut(s) 26, 202, 2801
HphI GGTGA 7 cut(s) 289, 420, 441, 602, 739, 944, 1310
Hpy166II GTNNAC 7 cut(s) 305, 956, 1022, 1469, 1903, 1997, 2005
Hpy8I GTNNAC 7 cut(s) 305, 956, 1022, 1469, 1903, 1997, 2005
Hpy99I CGWCG 1 cut(s) 1544
HpyAV CCTTC 9 cut(s) 366, 1010, 1494, 1511, 1605, 1678, 2092, 2545, 2570
HpyCH4III ACNGT 5 cut(s) 236, 694, 1050, 1417, 2067
HpyCH4IV ACGT 2 cut(s) 1816, 2824
HpyF10VI GCNNNNNNNGC 6 cut(s) 1193, 1202, 1226, 1760, 1889, 1958
HpySE526I ACGT 2 cut(s) 1816, 2824
HspAI GCGC 4 cut(s) 1203, 1458, 2141, 2889
KpnI GGTACC 1 cut(s) 729
Kzo9I GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
LmnI GCTCC 4 cut(s) 812, 1354, 1897, 2798
LweI GCATC 9 cut(s) 304, 394, 464, 553, 652, 694, 1763, 2219, 2297
MabI ACCWGGT 1 cut(s) 2770
MaeI CTAG 6 cut(s) 6, 516, 614, 1341, 1346, 1962
MaeII ACGT 2 cut(s) 1816, 2824
MaeIII GTNAC 8 cut(s) 227, 426, 745, 901, 980, 1066, 1265, 2052
MalI GATC 6 cut(s) 118, 643, 1131, 2232, 2706, 2711
MbiI CCGCTC 1 cut(s) 2905
MboI GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
MfeI CAATTG 1 cut(s) 1524
MflI RGATCY 3 cut(s) 116, 2230, 2709
MhlI GDGCHC 3 cut(s) 921, 2398, 2795
MlyI GAGTC 6 cut(s) 227, 409, 434, 791, 2032, 2693
MmeI TCCRAC 1 cut(s) 2819
MroXI GAANNNNTTC 5 cut(s) 274, 498, 1615, 2275, 2334
MseI TTAA 6 cut(s) 174, 182, 600, 1374, 2390, 2456
MslI CAYNNNNRTG 3 cut(s) 894, 969, 1329
MspA1I CMGCKG 4 cut(s) 61, 1061, 1076, 1490
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 3 cut(s) 26, 202, 2801
MspR9I CCNGG 6 cut(s) 47, 751, 1294, 2235, 2772, 2802
MunI CAATTG 1 cut(s) 1524
Mva1269I GAATGC 1 cut(s) 2574
MvaI CCWGG 5 cut(s) 47, 751, 1294, 2235, 2772
MvnI CGCG 1 cut(s) 2143
MwoI GCNNNNNNNGC 6 cut(s) 1193, 1202, 1226, 1760, 1889, 1958
NciI CCSGG 1 cut(s) 2802
NcoI CCATGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 1011
NdeII GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
NlaIV GGNNCC 6 cut(s) 196, 727, 1662, 1893, 2191, 2346
NmeAIII GCCGAG 1 cut(s) 2399
NmuCI GTSAC 5 cut(s) 227, 426, 745, 980, 1066
NspI RCATGY 5 cut(s) 1401, 1442, 1860, 2003, 2585
NspV TTCGAA 1 cut(s) 502
PaeI GCATGC 1 cut(s) 1860
PaeR7I CTCGAG 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 460
PciI ACATGT 3 cut(s) 1438, 1999, 2581
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 2574
PdmI GAANNNNTTC 5 cut(s) 274, 498, 1615, 2275, 2334
PfeI GAWTC 6 cut(s) 18, 686, 988, 1241, 1259, 2113
PfoI TCCNGGA 1 cut(s) 2233
PleI GAGTC 6 cut(s) 226, 409, 433, 790, 2032, 2692
PpsI GAGTC 6 cut(s) 226, 409, 433, 790, 2032, 2692
PpuMI RGGWCCY 1 cut(s) 2344
PscI ACATGT 3 cut(s) 1438, 1999, 2581
PshBI ATTAAT 2 cut(s) 182, 600
PsiI TTATAA 1 cut(s) 1830
Psp124BI GAGCTC 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 2344
Psp6I CCWGG 5 cut(s) 45, 749, 1292, 2233, 2770
PspEI GGTNACC 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 5 cut(s) 45, 749, 1292, 2233, 2770
PspN4I GGNNCC 6 cut(s) 196, 727, 1662, 1893, 2191, 2346
PspPI GGNCC 3 cut(s) 23, 2190, 2344
PspPPI RGGWCCY 1 cut(s) 2344
PspXI VCTCGAGB 1 cut(s) 189
PsrI GAACNNNNNNTAC 2 cut(s) 2739, 2771
PstI CTGCAG 4 cut(s) 322, 1222, 1957, 2482
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 3 cut(s) 116, 2230, 2709
PvuII CAGCTG 3 cut(s) 1061, 1076, 1490
RsaI GTAC 8 cut(s) 86, 304, 612, 727, 1147, 1522, 1974, 2004
RsaNI GTAC 8 cut(s) 85, 303, 611, 726, 1146, 1521, 1973, 2003
RseI CAYNNNNRTG 3 cut(s) 894, 969, 1329
Rsr2I CGGWCCG 1 cut(s) 23
RsrII CGGWCCG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 921
SaqAI TTAA 6 cut(s) 174, 182, 600, 1374, 2390, 2456
Sau3AI GATC 6 cut(s) 116, 641, 1129, 2230, 2704, 2709
Sau96I GGNCC 3 cut(s) 23, 2190, 2344
ScaI AGTACT 2 cut(s) 612, 1147
SchI GAGTC 6 cut(s) 227, 409, 434, 791, 2032, 2693
ScrFI CCNGG 6 cut(s) 47, 751, 1294, 2235, 2772, 2802
SduI GDGCHC 3 cut(s) 921, 2398, 2795
SexAI ACCWGGT 1 cut(s) 2770
SfaNI GCATC 9 cut(s) 304, 394, 464, 553, 652, 694, 1763, 2219, 2297
SfcI CTRYAG 5 cut(s) 318, 459, 1218, 1953, 2478
Sfr274I CTCGAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 502
SinI GGWCC 2 cut(s) 23, 2344
SlaI CTCGAG 1 cut(s) 189
SmiMI CAYNNNNRTG 3 cut(s) 894, 969, 1329
SmlI CTYRAG 4 cut(s) 173, 189, 417, 2339
SmoI CTYRAG 4 cut(s) 173, 189, 417, 2339
SphI GCATGC 1 cut(s) 1860
SsiI CCGC 5 cut(s) 61, 1044, 1730, 2805, 2905
SspI AATATT 1 cut(s) 54
SspMI CTAG 6 cut(s) 6, 516, 614, 1341, 1346, 1962
SstI GAGCTC 1 cut(s) 921
StyD4I CCNGG 6 cut(s) 45, 749, 1292, 2233, 2770, 2800
StyI CCWWGG 4 cut(s) 120, 675, 1123, 1887
TaaI ACNGT 5 cut(s) 236, 694, 1050, 1417, 2067
TaiI ACGT 2 cut(s) 1819, 2827
TaqI TCGA 6 cut(s) 42, 190, 268, 478, 502, 1542
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 4 cut(s) 302, 610, 1145, 2002
TauI GCSGC 1 cut(s) 2908
TfiI GAWTC 6 cut(s) 18, 686, 988, 1241, 1259, 2113
Tru1I TTAA 6 cut(s) 174, 182, 600, 1374, 2390, 2456
Tru9I TTAA 6 cut(s) 174, 182, 600, 1374, 2390, 2456
TscAI CASTG 8 cut(s) 241, 699, 747, 989, 1219, 2023, 2070, 2857
TseFI GTSAC 5 cut(s) 227, 426, 745, 980, 1066
Tsp45I GTSAC 5 cut(s) 227, 426, 745, 980, 1066
TspDTI ATGAA 9 cut(s) 872, 1347, 1697, 1733, 2067, 2233, 2508, 2781, 2829
TspGWI ACGGA 2 cut(s) 1653, 1762
TspRI CASTG 8 cut(s) 241, 699, 747, 989, 1219, 2023, 2070, 2857
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 23, 2344
VspI ATTAAT 2 cut(s) 182, 600
XagI CCTNNNNNAGG 2 cut(s) 674, 2298
XapI RAATTY 3 cut(s) 762, 1381, 2073
XbaI TCTAGA 1 cut(s) 1340
XceI RCATGY 5 cut(s) 1401, 1442, 1860, 2003, 2585
XhoI CTCGAG 1 cut(s) 189
XmiI GTMKAC 2 cut(s) 955, 1021
XmnI GAANNNNTTC 5 cut(s) 274, 498, 1615, 2275, 2334
XspI CTAG 6 cut(s) 6, 516, 614, 1341, 1346, 1962
ZrmI AGTACT 2 cut(s) 612, 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.