Rorug04G0323700

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007387
Physical Location & Seq
Forward (+)
49911015 .. 49912744
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0323700.1

Sequence Viewer

Length: 807 bp
ATGACGACTTCGAGGCGACTGGCTGATAGGAAGGTGGAGAGGTTCGAGAAGAACATCACCAAGAGAGGCGCCGTGCCGGAGACGACCGCCAAGAAGGGCAAGGATTATCCCGTCGGCCCTATTCTCCTCGGCTTCTTCATCTTCGTTGTTGTTGGCTCATGTAAGTTTTTTTTTATCTTCAATTTGAAGCTCGAGATTGATCTACAAAGGGATTTGCTTTGTTTGGCCATGGAATTTTGTGAAACTCGAAAGGGGAATAATAATTTGATACCGAGCTGTAATGCATTTGGACCCACTTGTATAGGATTTTGTTGCCATGTAAATGCTTGTTTTGTTGATCTACATCTTATGATGCATCCACCGGCATTTGCCAAGATTGCACGATTTCTTACTTCTGGTTCTAGTTGCATGAATGTAAAGCTCTGTTTCAGATCATCAGGACAGCTACCACTGGAGGCATGGCCTAAATTGAGCCTGCTGCTTCTGCTGAGGTTTCTAAGTTATGAAAGAGATGGTCCGGTAACTGATATACAAGAATGTACTACAAGCTGTGGTTTCTATCTTGTTAAGCCTGGATATAAGAAGAAGCAGAGCCATACCCAGAGAGCTTCTCCACCCGGACCAAAGCCATTTCCATTTGTCAGAAATCTTTTTGAGCTCGGAGGAAAACGCCATCTTTCTTTGACCAAGCTTTCCCGACGCTATGGCCCTGGCCCTGGCCCTATAATCAGTTTGCATCTAGGCCAAATAACCACAGTTGTAGTTTCCTCATCCATTCTAGCCAAAGACCATGCTCTGAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

268

Amino Acids

29.87

Weight (kDa)

9.61

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAMP4 PF06624 5 - 56 3e-20 Ribosome associated membrane protein RAMP4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AciI CCGC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 2 cut(s) 181, 187
AjnI CCWGG 3 cut(s) 571, 709, 715
AluBI AGCT 8 cut(s) 190, 276, 421, 445, 549, 608, 658, 691
AluI AGCT 8 cut(s) 190, 276, 421, 445, 549, 608, 658, 691
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 7 cut(s) 115, 225, 461, 706, 712, 718, 742
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 7 cut(s) 116, 290, 515, 620, 707, 713, 719
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 3 cut(s) 290, 515, 620
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 660
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 465
BccI CCATC 2 cut(s) 506, 681
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 573, 711, 717
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 3 cut(s) 402, 740, 779
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
Bme1390I CCNGG 4 cut(s) 573, 618, 711, 717
Bme18I GGWCC 3 cut(s) 290, 515, 620
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 7 cut(s) 116, 290, 515, 620, 707, 713, 719
BmiI GGNNCC 2 cut(s) 70, 292
BmrFI CCNGG 4 cut(s) 573, 618, 711, 717
BmsI GCATC 3 cut(s) 342, 364, 745
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 127, 228, 709, 715
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 24, 456
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 3 cut(s) 573, 711, 717
BseDI CCNNGG 4 cut(s) 127, 228, 709, 715
BseGI GGATG 2 cut(s) 355, 770
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 24, 456
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 7 cut(s) 117, 227, 463, 708, 714, 720, 744
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 77, 362, 518, 618
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 7 cut(s) 117, 227, 463, 708, 714, 720, 744
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 3 cut(s) 199, 337, 431
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 87
BspANI GGCC 7 cut(s) 117, 227, 463, 708, 714, 720, 744
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 70, 292
BspT107I GGYRCC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 24, 456
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 127, 228, 709, 715
BssMI GATC 3 cut(s) 199, 337, 431
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 3 cut(s) 573, 711, 717
Bst4CI ACNGT 1 cut(s) 757
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 488, 497
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 355, 770
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 202, 340, 434
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 199, 337, 431
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 377, 484
BstNI CCWGG 3 cut(s) 573, 711, 717
BstSCI CCNGG 4 cut(s) 571, 616, 709, 715
BstV1I GCAGC 1 cut(s) 465
BsuRI GGCC 7 cut(s) 117, 227, 463, 708, 714, 720, 744
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 355, 770
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 7 cut(s) 116, 290, 515, 620, 707, 713, 719
CseI GACGC 1 cut(s) 708
Csp6I GTAC 1 cut(s) 540
CviAII CATG 7 cut(s) 159, 229, 317, 409, 459, 791, 804
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 2 cut(s) 488, 497
DinI GGCGCC 1 cut(s) 70
DpnI GATC 3 cut(s) 201, 339, 433
DpnII GATC 3 cut(s) 199, 337, 431
EaeI YGGCCR 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 660
Eco47I GGWCC 3 cut(s) 290, 515, 620
Eco53kI GAGCTC 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 658
EcoRII CCWGG 3 cut(s) 571, 709, 715
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 2 cut(s) 286, 357
EcoT38I GRGCYC 1 cut(s) 660
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 7 cut(s) 162, 232, 320, 412, 462, 794, 807
FatI CATG 7 cut(s) 158, 228, 316, 408, 458, 790, 803
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 2 cut(s) 342, 757
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 3 cut(s) 402, 740, 779
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 473
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 7 cut(s) 117, 227, 463, 708, 714, 720, 744
HapII CCGG 4 cut(s) 77, 362, 518, 618
HgaI GACGC 1 cut(s) 708
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 7 cut(s) 162, 232, 320, 412, 462, 794, 807
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 689
HpaII CCGG 4 cut(s) 77, 362, 518, 618
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 431, 644, 662, 798
Hpy188III TCNNGA 4 cut(s) 46, 193, 438, 696
Hpy99I CGWCG 2 cut(s) 116, 702
HpyAV CCTTC 2 cut(s) 25, 88
HpyCH4III ACNGT 1 cut(s) 757
HpyCH4V TGCA 5 cut(s) 284, 355, 380, 408, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 484
HpyF3I CTNAG 2 cut(s) 488, 497
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 7 cut(s) 162, 232, 320, 412, 462, 794, 807
HspAI GCGC 1 cut(s) 69
KasI GGCGCC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 199, 337, 431
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 3 cut(s) 342, 364, 745
MaeI CTAG 3 cut(s) 402, 740, 779
MaeIII GTNAC 1 cut(s) 520
MalI GATC 3 cut(s) 201, 339, 433
MboI GATC 3 cut(s) 199, 337, 431
MboII GAAGA 5 cut(s) 61, 127, 133, 169, 595
MhlI GDGCHC 1 cut(s) 660
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 4 cut(s) 181, 233, 262, 467
MluNI TGGCCA 1 cut(s) 227
Mly113I GGCGCC 1 cut(s) 69
MnlI CCTC 8 cut(s) 6, 33, 59, 137, 448, 483, 656, 778
Mox20I TGGCCA 1 cut(s) 227
Mph1103I ATGCAT 2 cut(s) 286, 357
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 4 cut(s) 77, 362, 518, 618
MspR9I CCNGG 4 cut(s) 573, 618, 711, 717
MvaI CCWGG 3 cut(s) 573, 711, 717
MwoI GCNNNNNNNGC 2 cut(s) 377, 484
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 1 cut(s) 618
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 199, 337, 431
NlaIII CATG 7 cut(s) 162, 232, 320, 412, 462, 794, 807
NlaIV GGNNCC 2 cut(s) 70, 292
NmeAIII GCCGAG 1 cut(s) 108
NsiI ATGCAT 2 cut(s) 286, 357
PaeR7I CTCGAG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 480
PluTI GGCGCC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 3 cut(s) 571, 709, 715
PspGI CCWGG 3 cut(s) 571, 709, 715
PspN4I GGNNCC 2 cut(s) 70, 292
PspPI GGNCC 7 cut(s) 116, 290, 515, 620, 707, 713, 719
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 660
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 3 cut(s) 199, 337, 431
Sau96I GGNCC 7 cut(s) 116, 290, 515, 620, 707, 713, 719
ScrFI CCNGG 4 cut(s) 573, 618, 711, 717
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 3 cut(s) 342, 364, 745
SfoI GGCGCC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 3 cut(s) 290, 515, 620
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 181, 233, 262, 467
SsiI CCGC 1 cut(s) 87
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 3 cut(s) 402, 740, 779
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 571, 616, 709, 715
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 757
TaqI TCGA 4 cut(s) 11, 45, 192, 247
TasI AATT 4 cut(s) 181, 233, 262, 467
TatI WGTACW 1 cut(s) 539
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 456
TseI GCWGC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 127, 425, 519
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 290, 515, 620
XapI RAATTY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 191
XspI CTAG 3 cut(s) 402, 740, 779
Zsp2I ATGCAT 2 cut(s) 286, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.