Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007387

Physical Location & Seq

Genomic Coordinates Forward (+)

49913109 .. 49914229

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGGATGTAGGGAAACCAAACTTGGCAGACTTTTCTCCTGTGCTCAGGAAGCTTAACCCCCAAGGCATAAGGCGGCGCCTGGCCAATTATTTCCAGAAAACGGTGGTCTACTTCGACCACCTGATCAATCAAAGTGAAGATCCAGAGAGAAATGAGGATTTGGACAAGACACAAGTCCAACATTTGATTGTGGATCTATTAGTTGCTGGCACAGATACAACTTCAGCCACTATAGAGTGGGCAATGGCTGAGCTACTACGCAACCCAGAAGGTGCACAAGTTCTTGTCAATGTTTGGGCCATAGGAAGAGACCCTGGCACTTGGGATAGCCCCGGCTATTTTAAGCCGGAGAGGTTCTTGGGGTTGGAGAATGAAATTGATGTTATGGGAAGAAACTTTAATTTGAGCTTATTAGGGTTGCCTTTGGCATTGAGAATGTTACACTTGATATTAGGGTTGCTCATTAACTGCTTTGAATGGAAGCTCGAAGATGGTGTTGTACGGTTGTACACTTGTACACTTGTACCAAAGACTATGAACATGGAGGAGAAGTTTGGCATCAACTTAAGAATGGTTCAGCCTCTTAGAGCTGTGCCCAACAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

5.46

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 91	2.1e-10	Cytochrome P450
p450	PF00067	90 - 166	2.7e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69710 AT1G69710
fragaria_vesca	FvH4_4g31540 FvH4_4g31540
malus_domestica	MD13G1073700.v1.1 MD16G1075000.v1.1
prunus_persica	Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1 Prupe.1G272300_v2.0.a1
pyrus_communis	pycom13g06590
rosa_chinensis	RchiOBHm_Chr4g0440051
rosa_laevigata	RLG00000006210
rosa_roxburghii	Rroxscaffold_5G00380990
rosa_rugosa	Rorug04G0323700 Rorug04G0323800 Rorug04G0323900 Rorug04G0324000 Rorug04G0324000
rosa_samantha	Rh4AG374500 Rh4BG386900 Rh4CG401400 Rh4DG381100
rosa_wichuraiana	Rw4G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	137, 204
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	4 cut(s)	504, 512, 520, 528
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	81, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	5 cut(s)	55, 256, 411, 487, 593
AluI	AGCT	5 cut(s)	55, 256, 411, 487, 593
Alw21I	GWGCWC	2 cut(s)	48, 280
Alw26I	GTCTC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	137, 204
AoxI	GGCC	2 cut(s)	84, 300
ApaLI	GTGCAC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	336
BaeGI	GKGCMC	2 cut(s)	280, 600
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	48, 280
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	83, 318
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	568
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	3 cut(s)	83, 318, 336
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	83, 318, 336
BmsI	GCATC	1 cut(s)	570
BoxI	GACNNNNGTC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	64, 316, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	83, 318
BseDI	CCNNGG	3 cut(s)	64, 316, 334
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	61, 243
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	2 cut(s)	280, 600
BshFI	GGCC	2 cut(s)	86, 302
BshNI	GGYRCC	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	48, 280
BsiSI	CCGG	2 cut(s)	336, 350
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	86, 302
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	3 cut(s)	48, 280, 600
Bsp1407I	TGTACA	2 cut(s)	510, 518
Bsp143I	GATC	3 cut(s)	126, 142, 196
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	86, 302
BspCNI	CTCAG	2 cut(s)	60, 244
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	137, 204
BspT107I	GGYRCC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	2 cut(s)	510, 518
BssECI	CCNNGG	3 cut(s)	64, 316, 334
BssMI	GATC	3 cut(s)	126, 142, 196
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	83, 318
Bst4CI	ACNGT	2 cut(s)	106, 507
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	79
BstAFI	CTTAAG	1 cut(s)	568
BstAUI	TGTACA	2 cut(s)	510, 518
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	47, 252, 587
BstF5I	GGATG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	129, 145, 199
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	126, 142, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	83, 318
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	81, 316, 334
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	2 cut(s)	280, 600
BstX2I	RGATCY	2 cut(s)	142, 196
BstYI	RGATCY	2 cut(s)	142, 196
BsuRI	GGCC	2 cut(s)	86, 302
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	503, 511, 519, 527
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	4 cut(s)	503, 511, 519, 527
DdeI	CTNAG	3 cut(s)	47, 252, 587
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	3 cut(s)	128, 144, 198
DpnII	GATC	3 cut(s)	126, 142, 196
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	81, 316
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	547
FaiI	YATR	7 cut(s)	71, 236, 305, 389, 539, 545, 610
FatI	CATG	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	86, 302
HapII	CCGG	2 cut(s)	336, 350
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	53
HpaII	CCGG	2 cut(s)	336, 350
Hpy166II	GTNNAC	4 cut(s)	112, 278, 513, 521
Hpy188III	TCNNGA	3 cut(s)	49, 97, 146
Hpy8I	GTNNAC	4 cut(s)	112, 278, 513, 521
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	106, 507
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	47, 252, 587
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	126, 142, 196
LweI	GCATC	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	128, 144, 198
MboI	GATC	3 cut(s)	126, 142, 196
MboII	GAAGA	4 cut(s)	152, 321, 405, 503
MflI	RGATCY	2 cut(s)	142, 196
MhlI	GDGCHC	3 cut(s)	48, 280, 600
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	3 cut(s)	88, 378, 403
MluNI	TGGCCA	1 cut(s)	86
Mly113I	GGCGCC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	205, 348
MnlI	CCTC	4 cut(s)	151, 348, 541, 594
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	5 cut(s)	57, 345, 402, 468, 569
Msp20I	TGGCCA	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	2 cut(s)	336, 350
MspR9I	CCNGG	3 cut(s)	83, 318, 336
MvaI	CCWGG	2 cut(s)	83, 318
MwoI	GCNNNNNNNGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	126, 142, 196
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	78
PluTI	GGCGCC	1 cut(s)	82
PshAI	GACNNNNGTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	81, 316
PspGI	CCWGG	2 cut(s)	81, 316
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	142, 196
RsaI	GTAC	4 cut(s)	504, 512, 520, 528
RsaNI	GTAC	4 cut(s)	503, 511, 519, 527
SaqAI	TTAA	5 cut(s)	57, 345, 402, 468, 569
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	3 cut(s)	126, 142, 196
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	3 cut(s)	83, 318, 336
SduI	GDGCHC	3 cut(s)	48, 280, 600
SetI	ASST	8 cut(s)	57, 126, 258, 277, 359, 413, 489, 595
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	234
SfoI	GGCGCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	3 cut(s)	88, 378, 403
SsiI	CCGC	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	81, 316, 334
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	106, 507
TaqI	TCGA	2 cut(s)	117, 489
TasI	AATT	3 cut(s)	88, 378, 403
TatI	WGTACW	2 cut(s)	510, 518
TauI	GCSGC	1 cut(s)	79
Tru1I	TTAA	5 cut(s)	57, 345, 402, 468, 569
Tru9I	TTAA	5 cut(s)	57, 345, 402, 468, 569
TspDTI	ATGAA	2 cut(s)	390, 554
Vha464I	CTTAAG	1 cut(s)	568
VneI	GTGCAC	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.