Rorug04G0323900

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007387
Physical Location & Seq
Forward (+)
49915181 .. 49917180
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0323900.1

Sequence Viewer

Length: 1512 bp
ATGGAGTTCTTGAGCTTCATGCTCTTATGTCTTGGCTTTGCCTGGATCTTCAGCCGAGCCTTGCTTTCATTTGCAAGAAAAAGCAAAGCCATACCCAAGAGGCTTCTTCCACCAGGACCAAAGCCATTTCCACTTATCGGAAATCTCCTTGAGCTCGGAGACAAACCCCACCACTCCCTCACTAAGCTTTCCAAACGCTACGGCCCCATAATCAGTTTACAACTTGGCCAAGTAACTACAGTTGTATTTTCCTCACCAACTCTAGCCAAAGATATCCTCCAAACCCATGACCAAATCCTCTGCAACCGAAACCTCCCAGATGGTGTCCACGCCTGCAATCACTGCGAGTACAGCTTGCCCTGGCTACCTGTGTCACCAAAATGGAGAAACCTTCGCAGAATATGCAACTCCTATTTGTTTGCCACCAAAGTTTTGGATGCCAACAAAGACAACCGGCGCGTGAAGGTGCAACAGCTCATTGATGATGTTGATGAAAGCATGAGGGCGGGTAATGCAGTCGACATCGGAAGGGCTGCTTTCGCAACTACGCTGAATCTTTTGTCCCGGACTATCTTCTCGGTTGATCTAGCTGACCCGAGTAGCGAGACGGCTAGGAAGTTCAAAGACAATATTAGGGGTATGATGGAAGATGTGGGGAAACCAAACTTGGTGGACTTTTTTCCTTTGCTTAGGAAGCTTGACCCCCAAGGAATAAGGCGGCGCTTGACCAAATATATCCTGGAAACTGTGGTCTACTTCAAAGGCATGATCGATCAAAGGTTGGAATCAAGAAAAGAGAAACAATATGTCACAAGTAATGATATGTTGGATATCCTTATAAACATCAGTGAAGAGGGAAATGAGGATATGGACGAGACACAAATTGAACATTTCATTCTGGATCTATTTATTGTAGGCACGGATACAACTTCAGCCACTATGGAGTGGGCAATGGCTGAACTACTACGCAACCCAGAAGCCATGTCGAAAGCTCAAGCTGAGCTTGAGGAAGTGATTGAAAAAGGGAAACAAGTTGAGGAATCTGACATTGCTCAGCTCCCTTACTTACAAGCAGTAATCAAAGAAACGGTTCGGTTGCACCCAGTAGCTCCCTTGCTTCTTCCACGAAAAGCTGAATCAGATGTAGAAATCGGAGGGTACATTATCCCGAAGGGGGCACAAGTTCTAGTCAATGTTTGGGCCATAGGAAGAGACCCCGACACTTGGGATAACCCCGACTGTTTTAAGCCGGAGAGGTTCTTGGGGTTGGAGAATGAGATTGATGTTATTGGAAGAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGAAGAATATGTCCGGGGTTGCCTTTAGCAATGAGAATGTTGCAGTTGATGTTGGGGTCTCTTATTAACTGCTTTGATTGGAAGCTTAAAGAAGGAGTTGTCCCTGAGACTATGAACATGGAGGAGAAGTTTGGCATCACCTTACAGATGGCTCAGCCTCTTAGAGCTGTGCCCAACAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

503

Amino Acids

56.94

Weight (kDa)

6.25

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 487 1.4e-105 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 839, 1510
AccB7I CCANNNNNTGG 1 cut(s) 1319
AccI GTMKAC 2 cut(s) 519, 753
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 506, 718
AclWI GGATC 2 cut(s) 53, 909
AcoI YGGCCR 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 34, 915
AfaI GTAC 2 cut(s) 350, 1160
AfiI CCNNNNNNNGG 4 cut(s) 137, 1174, 1224, 1319
AgsI TTSAA 4 cut(s) 622, 760, 887, 1019
AjnI CCWGG 4 cut(s) 41, 112, 359, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 6 cut(s) 153, 599, 869, 1206, 1389, 1427
AlwI GGATC 2 cut(s) 53, 909
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 3 cut(s) 202, 226, 1200
ApeKI GCWGC 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 1089
AspLEI GCGC 2 cut(s) 459, 723
AspS9I GGNCC 3 cut(s) 116, 203, 1200
AsuC2I CCSGG 2 cut(s) 565, 1341
AsuHPI GGTGA 3 cut(s) 246, 366, 1456
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 2 cut(s) 1180, 1500
BalI TGGCCA 1 cut(s) 228
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 520
BccI CCATC 3 cut(s) 314, 637, 1468
BceAI ACGGC 2 cut(s) 217, 624
BciT130I CCWGG 4 cut(s) 43, 114, 361, 740
BciVI GTATCC 1 cut(s) 916
BcnI CCSGG 2 cut(s) 565, 1341
BcoDI GTCTC 6 cut(s) 153, 599, 869, 1206, 1389, 1427
BfaI CTAG 4 cut(s) 263, 587, 612, 1187
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 724
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 2 cut(s) 534, 719
BlpI GCTNAGC 3 cut(s) 999, 1053, 1479
BlsI GCNGC 2 cut(s) 535, 720
Bme1390I CCNGG 6 cut(s) 43, 114, 361, 565, 740, 1341
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 116, 203, 1200
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 6 cut(s) 43, 114, 361, 565, 740, 1341
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 2 cut(s) 427, 1470
BmuI ACTGGG 1 cut(s) 1097
Bpu10I CCTNAGC 1 cut(s) 689
Bpu1102I GCTNAGC 3 cut(s) 999, 1053, 1479
BpuEI CTTGAG 4 cut(s) 31, 170, 978, 1025
BpuMI CCSGG 2 cut(s) 565, 1341
Bsa29I ATCGAT 1 cut(s) 771
BsaI GGTCTC 2 cut(s) 1206, 1389
BsaJI CCNNGG 3 cut(s) 359, 706, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 1439, 1469
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 1174, 1224, 1319
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 1103
Bse3DI GCAATG 3 cut(s) 957, 1047, 1362
BseBI CCWGG 4 cut(s) 43, 114, 361, 740
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 359, 706, 1340
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 4 cut(s) 137, 1174, 1224, 1319
BseMI GCAATG 3 cut(s) 957, 1047, 1362
BseMII CTCAG 4 cut(s) 990, 1067, 1422, 1493
BseNI ACTGG 1 cut(s) 1103
BseRI GAGGAG 1 cut(s) 1463
BseSI GKGCMC 2 cut(s) 1180, 1500
BseXI GCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 3 cut(s) 204, 228, 1202
BshVI ATCGAT 1 cut(s) 771
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 4 cut(s) 454, 565, 1250, 1340
BslFI GGGAC 2 cut(s) 547, 1412
BslI CCNNNNNNNGG 4 cut(s) 137, 1174, 1224, 1319
BsmAI GTCTC 6 cut(s) 153, 599, 869, 1206, 1389, 1427
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 2 cut(s) 547, 1412
BsnI GGCC 3 cut(s) 204, 228, 1202
Bso31I GGTCTC 2 cut(s) 1206, 1389
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 3 cut(s) 156, 1180, 1500
Bsp143I GATC 5 cut(s) 45, 583, 768, 772, 901
Bsp1720I GCTNAGC 3 cut(s) 999, 1053, 1479
BspACI CCGC 2 cut(s) 506, 718
BspANI GGCC 3 cut(s) 204, 228, 1202
BspCNI CTCAG 4 cut(s) 991, 1066, 1423, 1492
BspDI ATCGAT 1 cut(s) 771
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 2 cut(s) 53, 909
BspTNI GGTCTC 2 cut(s) 1206, 1389
BsrDI GCAATG 3 cut(s) 957, 1047, 1362
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 1 cut(s) 1103
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 3 cut(s) 359, 706, 1340
BssMI GATC 5 cut(s) 45, 583, 768, 772, 901
BssT1I CCWWGG 1 cut(s) 706
Bst2UI CCWGG 4 cut(s) 43, 114, 361, 740
Bst4CI ACNGT 4 cut(s) 241, 748, 1090, 1241
Bst6I CTCTTC 2 cut(s) 846, 1204
BstAPI GCANNNNNTGC 2 cut(s) 342, 402
BstC8I GCNNGC 2 cut(s) 334, 356
BstDEI CTNAG 7 cut(s) 183, 689, 999, 1053, 1431, 1479, 1487
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 2 cut(s) 459, 723
BstKTI GATC 5 cut(s) 48, 586, 771, 775, 904
BstMAI GTCTC 6 cut(s) 153, 599, 869, 1206, 1389, 1427
BstMBI GATC 5 cut(s) 45, 583, 768, 772, 901
BstMWI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
BstNI CCWGG 4 cut(s) 43, 114, 361, 740
BstSCI CCNGG 6 cut(s) 41, 112, 359, 563, 738, 1339
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 2 cut(s) 1180, 1500
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 520
BstX2I RGATCY 2 cut(s) 45, 901
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 2 cut(s) 45, 901
Bsu15I ATCGAT 1 cut(s) 771
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 3 cut(s) 204, 228, 1202
BsuTUI ATCGAT 1 cut(s) 771
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 340, 853
Cac8I GCNNGC 2 cut(s) 334, 356
CfoI GCGC 2 cut(s) 459, 723
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 116, 203, 1200
ClaI ATCGAT 1 cut(s) 771
Csp6I GTAC 2 cut(s) 349, 1159
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 6 cut(s) 19, 287, 499, 766, 982, 1444
CviQI GTAC 2 cut(s) 349, 1159
DdeI CTNAG 7 cut(s) 183, 689, 999, 1053, 1431, 1479, 1487
DpnI GATC 5 cut(s) 47, 585, 770, 774, 903
DpnII GATC 5 cut(s) 45, 583, 768, 772, 901
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 846, 1204
EarI CTCTTC 2 cut(s) 846, 1204
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 1206, 1389
Eco32I GATATC 2 cut(s) 274, 832
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 34, 915
Eco88I CYCGRG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 41, 112, 359, 738
EcoRV GATATC 2 cut(s) 274, 832
EcoT14I CCWWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 6 cut(s) 22, 290, 502, 769, 985, 1447
FalI AAGNNNNNCTT 4 cut(s) 520, 552, 987, 1019
FaqI GGGAC 2 cut(s) 547, 1412
FatI CATG 6 cut(s) 18, 286, 498, 765, 981, 1443
FauI CCCGC 1 cut(s) 499
FblI GTMKAC 2 cut(s) 519, 753
Fnu4HI GCNGC 2 cut(s) 534, 719
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 534, 719
FspBI CTAG 4 cut(s) 263, 587, 612, 1187
GlaI GCGC 2 cut(s) 458, 722
GluI GCNGC 2 cut(s) 534, 719
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 3 cut(s) 204, 228, 1202
HapII CCGG 4 cut(s) 454, 565, 1250, 1340
HhaI GCGC 2 cut(s) 459, 723
Hin1II CATG 6 cut(s) 22, 290, 502, 769, 985, 1447
Hin6I GCGC 2 cut(s) 457, 721
HinP1I GCGC 2 cut(s) 457, 721
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 3 cut(s) 185, 695, 1409
HinfI GANTC 4 cut(s) 553, 785, 1040, 1136
HpaII CCGG 4 cut(s) 454, 565, 1250, 1340
HphI GGTGA 3 cut(s) 246, 366, 1456
Hpy166II GTNNAC 5 cut(s) 218, 328, 520, 673, 754
Hpy188I TCNGA 6 cut(s) 140, 158, 527, 1045, 1141, 1154
Hpy188III TCNNGA 4 cut(s) 10, 789, 899, 1168
Hpy8I GTNNAC 5 cut(s) 218, 328, 520, 673, 754
HpyAV CCTTC 5 cut(s) 401, 457, 522, 1165, 1412
HpyCH4III ACNGT 4 cut(s) 241, 748, 1090, 1241
HpyCH4V TGCA 8 cut(s) 74, 303, 336, 405, 469, 515, 1099, 1369
HpyF10VI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
HpyF3I CTNAG 7 cut(s) 183, 689, 999, 1053, 1431, 1479, 1487
Hsp92II CATG 6 cut(s) 22, 290, 502, 769, 985, 1447
HspAI GCGC 2 cut(s) 457, 721
Kzo9I GATC 5 cut(s) 45, 583, 768, 772, 901
LmnI GCTCC 2 cut(s) 1062, 1114
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 427, 1470
MaeI CTAG 4 cut(s) 263, 587, 612, 1187
MaeIII GTNAC 3 cut(s) 232, 372, 808
MalI GATC 5 cut(s) 47, 585, 770, 774, 903
MboI GATC 5 cut(s) 45, 583, 768, 772, 901
MboII GAAGA 9 cut(s) 40, 98, 565, 659, 863, 1112, 1221, 1305, 1341
MflI RGATCY 2 cut(s) 45, 901
MhlI GDGCHC 3 cut(s) 156, 1180, 1500
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 882
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 3 cut(s) 762, 807, 1248
Mox20I TGGCCA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 228
MseI TTAA 3 cut(s) 1245, 1392, 1413
MslI CAYNNNNRTG 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 4 cut(s) 454, 565, 1250, 1340
MspR9I CCNGG 6 cut(s) 43, 114, 361, 565, 740, 1341
MvaI CCWGG 4 cut(s) 43, 114, 361, 740
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
NciI CCSGG 2 cut(s) 565, 1341
NdeII GATC 5 cut(s) 45, 583, 768, 772, 901
NlaIII CATG 6 cut(s) 22, 290, 502, 769, 985, 1447
NlaIV GGNNCC 1 cut(s) 205
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 372, 808
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 4 cut(s) 553, 785, 1040, 1136
PflMI CCANNNNNTGG 1 cut(s) 1319
PfoI TCCNGGA 2 cut(s) 563, 738
PkrI GCNGC 2 cut(s) 535, 720
PsiI TTATAA 2 cut(s) 839, 1510
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 4 cut(s) 41, 112, 359, 738
PspGI CCWGG 4 cut(s) 41, 112, 359, 738
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 116, 203, 1200
PsuI RGATCY 2 cut(s) 45, 901
RsaI GTAC 2 cut(s) 350, 1160
RsaNI GTAC 2 cut(s) 349, 1159
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 3 cut(s) 1245, 1392, 1413
SatI GCNGC 2 cut(s) 534, 719
Sau3AI GATC 5 cut(s) 45, 583, 768, 772, 901
Sau96I GGNCC 3 cut(s) 116, 203, 1200
ScrFI CCNGG 6 cut(s) 43, 114, 361, 565, 740, 1341
SduI GDGCHC 3 cut(s) 156, 1180, 1500
SfaNI GCATC 2 cut(s) 427, 1470
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 4 cut(s) 10, 149, 993, 1004
SmoI CTYRAG 4 cut(s) 10, 149, 993, 1004
Sse9I AATT 1 cut(s) 882
SsiI CCGC 2 cut(s) 506, 718
SspI AATATT 1 cut(s) 631
SspMI CTAG 4 cut(s) 263, 587, 612, 1187
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 6 cut(s) 41, 112, 359, 563, 738, 1339
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 4 cut(s) 241, 748, 1090, 1241
TaqI TCGA 3 cut(s) 519, 771, 986
TasI AATT 1 cut(s) 882
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 4 cut(s) 553, 785, 1040, 1136
Tru1I TTAA 3 cut(s) 1245, 1392, 1413
Tru9I TTAA 3 cut(s) 1245, 1392, 1413
TscAI CASTG 2 cut(s) 347, 853
TseFI GTSAC 2 cut(s) 372, 808
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 2 cut(s) 372, 808
TspDTI ATGAA 5 cut(s) 7, 57, 507, 883, 1454
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 2 cut(s) 347, 853
Van91I CCANNNNNTGG 1 cut(s) 1319
VpaK11BI GGWCC 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 736
XmiI GTMKAC 2 cut(s) 519, 753
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 4 cut(s) 263, 587, 612, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.