AT1G26930

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006468
Physical Location & Seq
Reverse (-)
9336057 .. 9337938
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26930.1

Sequence Viewer

Length: 1266 bp
ATGTTCGAAGGTCGTCCTCGTGATTCTTGTCTAGTTTCAACACTTTTCACCATGCCAAGCCATAAAGAAACGAAATGGAGCTTTTTGGTTTCTGGGAAACGATCTTTTCTCAACAACGATGAGTCTGATCTTCACTTCAAGAAGATGTACAAGCTTACTACTGATTCAAGTGAAGGAGAAGACAATGGATCTTCTTCAGATTCAGGAACACTTATCCCAGGGATGAACAGAGATGATTCGTTAAGCTGTTTGATTCGTTGCTCTAGAGCTGATTACTGCTCCATTGCTTCTGTGAATCGTAGCTTACGTTCTTTGATTCGAAGTGGAGAGATTTATAGACTCAGGAGACTACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAATGAATGGGAAGCTTTTGATCCAAGATCGAAACGGTGGATGCATTTGCCGAGTATGCCACAGAACGAGTGTTTCAGGTATGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTTGGTTGGGAAGTGAGTTCTTACGTAATCTATAGATACAGTCTTTTGACTAACTCTTGGTCTACTGCGAAGAGTATGAACATGCCTAGATGTTTGTTTGGCTCTGCTAGTTACGGAGAGATTGCGGTTTTAGCGGGTGGTTGCGATTCGAGCGGTAGGATTCTTGATACTGCGGAGTTGTATAACTACGAGGATCAGACTTGGTTGGTGTTACCCGGGATGAACAAGAGGAGGAAAATGTGTTCCGGTGTGTTTATGGATGGGAAGTTTTATGTCATTGGTGGGATTGGTGTTGGGGAAGAGAATGAGCCAAAGGTTTTGACTTGTGGGGAAGAGTTTGATTTGAAGACTAGGAAATGGACAGAGATCCCTGAGATGTCACCACCGCGGTCTAACCAGGGGAACGGAATGTCTGCAGCTGCGATGGCTCCACCGCTTGTAGCGGTTGTGAATGACCAGCTTTATGCAGCTGATCATGCTGGTATGGCGGTTAGAAGGTATGATAAAGAGAAACGTGTTTGGAATAAAGTTGGGAACTTGCCTGAGCAAGCGGGTTCGATGAACGGTTGGGGTTTAGCTTTTAGAGCTTGTGGGGATCGGATTATAGTGATTGGTGGACCAAAGGCTCCAGGTGAAGGATTCATTGAGCTTAACTCATGGGTACCAAGTGTTACAACACCGGAATGGCATTTACTAGGCAAGAAACAGTCGGTTAATTTCGTGTATAATTGCGCCGTGATGAGTTGTTGA

Protein Analysis

421

Amino Acids

47.19

Weight (kDa)

7.02

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 131 - 313 4.4e-09 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 132 - 303 1.2e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 151 - 375 3.9e-12 FKB95, Kelch-repeats domain
Kelch_1 PF01344 201 - 247 2.9e-08 Kelch motif
Beta-prop_Calicin PF13964 213 - 359 2.6e-08 Calicin, beta-propeller domain
Kelch_1 PF01344 249 - 299 4.6e-09 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1177
AccB1I GGYRCC 1 cut(s) 1177
AccBSI CCGCTC 1 cut(s) 669
AccI GTMKAC 1 cut(s) 578
AccII CGCG 1 cut(s) 904
AclWI GGATC 5 cut(s) 196, 407, 717, 877, 1119
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 2 cut(s) 149, 1179
AfiI CCNNNNNNNGG 1 cut(s) 1151
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 4 cut(s) 39, 139, 168, 862
AjnI CCWGG 3 cut(s) 217, 912, 1144
AloI GAACNNNNNNTCC 2 cut(s) 742, 774
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 5 cut(s) 196, 407, 717, 877, 1119
Ama87I CYCGRG 1 cut(s) 731
ApeKI GCWGC 3 cut(s) 932, 935, 983
Asp718I GGTACC 1 cut(s) 1177
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 1 cut(s) 1133
AsuC2I CCSGG 2 cut(s) 732, 733
AsuHPI GGTGA 3 cut(s) 40, 888, 1160
AsuII TTCGAA 2 cut(s) 6, 319
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 1177
BauI CACGAG 2 cut(s) 18, 382
BbsI GAAGAC 2 cut(s) 186, 869
BbvI GCAGC 3 cut(s) 922, 944, 995
BccI CCATC 3 cut(s) 396, 770, 934
BceAI ACGGC 1 cut(s) 1235
BciT130I CCWGG 3 cut(s) 219, 914, 1146
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 2 cut(s) 732, 733
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 6 cut(s) 32, 264, 603, 624, 867, 1211
BfmI CTRYAG 3 cut(s) 495, 547, 930
BisI GCNGC 3 cut(s) 933, 936, 984
BlsI GCNGC 3 cut(s) 934, 937, 985
Bme1390I CCNGG 5 cut(s) 219, 732, 733, 914, 1146
Bme18I GGWCC 1 cut(s) 1133
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 1133
BmiI GGNNCC 3 cut(s) 945, 1143, 1179
BmrFI CCNGG 5 cut(s) 219, 732, 733, 914, 1146
BmsI GCATC 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 186, 869
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 1 cut(s) 1059
Bpu14I TTCGAA 2 cut(s) 6, 319
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 732, 733
BsaAI YACGTR 1 cut(s) 541
BsaJI CCNNGG 5 cut(s) 217, 218, 731, 902, 913
BsaWI WCCGGW 2 cut(s) 761, 1195
Bsc4I CCNNNNNNNGG 1 cut(s) 1151
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 3 cut(s) 219, 914, 1146
BseDI CCNNGG 5 cut(s) 217, 218, 731, 902, 913
BseGI GGATG 4 cut(s) 228, 438, 741, 781
BseLI CCNNNNNNNGG 1 cut(s) 1151
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 355, 879, 1050
BseRI GAGGAG 1 cut(s) 760
BseXI GCAGC 3 cut(s) 922, 944, 995
Bsh1236I CGCG 1 cut(s) 904
BshNI GGYRCC 1 cut(s) 1177
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 3 cut(s) 732, 762, 1196
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 1151
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 731
Bsp119I TTCGAA 2 cut(s) 6, 319
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
BspCNI CTCAG 3 cut(s) 354, 880, 1051
BspFNI CGCG 1 cut(s) 904
BspLI GGNNCC 3 cut(s) 945, 1143, 1179
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 5 cut(s) 196, 407, 717, 877, 1119
BspT104I TTCGAA 2 cut(s) 6, 319
BspT107I GGYRCC 1 cut(s) 1177
BsrBI CCGCTC 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 147
BssECI CCNNGG 5 cut(s) 217, 218, 731, 902, 913
BssMI GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
BssSI CACGAG 2 cut(s) 18, 382
Bst2BI CACGAG 2 cut(s) 18, 382
Bst2UI CCWGG 3 cut(s) 219, 914, 1146
Bst4CI ACNGT 4 cut(s) 429, 557, 1082, 1224
Bst6I CTCTTC 3 cut(s) 581, 810, 843
BstAUI TGTACA 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 541
BstBI TTCGAA 2 cut(s) 6, 319
BstC8I GCNNGC 1 cut(s) 1065
BstDEI CTNAG 3 cut(s) 341, 888, 1059
BstDSI CCRYGG 1 cut(s) 902
BstF5I GGATG 4 cut(s) 228, 438, 741, 781
BstFNI CGCG 1 cut(s) 904
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 9 cut(s) 104, 130, 191, 415, 422, 712, 885, 991, 1114
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
BstMWI GCNNNNNNNGC 7 cut(s) 448, 647, 666, 941, 992, 1001, 1100
BstNI CCWGG 3 cut(s) 219, 914, 1146
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 5 cut(s) 217, 730, 731, 912, 1144
BstSFI CTRYAG 3 cut(s) 495, 547, 930
BstSNI TACGTA 1 cut(s) 541
BstUI CGCG 1 cut(s) 904
BstV1I GCAGC 3 cut(s) 922, 944, 995
BstV2I GAAGAC 2 cut(s) 186, 869
BstX2I RGATCY 2 cut(s) 188, 882
BstYI RGATCY 2 cut(s) 188, 882
BtgI CCRYGG 1 cut(s) 902
BtgZI GCGATG 1 cut(s) 953
BtsCI GGATG 4 cut(s) 228, 438, 741, 781
Cac8I GCNNGC 1 cut(s) 1065
CfoI GCGC 1 cut(s) 1250
Cfr13I GGNCC 1 cut(s) 1133
Cfr42I CCGCGG 1 cut(s) 905
Cfr9I CCCGGG 1 cut(s) 731
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 148, 1178
CviAII CATG 4 cut(s) 52, 598, 992, 1173
CviQI GTAC 2 cut(s) 148, 1178
DdeI CTNAG 3 cut(s) 341, 888, 1059
DpnI GATC 9 cut(s) 103, 129, 190, 414, 421, 711, 884, 990, 1113
DpnII GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
Eam1104I CTCTTC 3 cut(s) 581, 810, 843
EarI CTCTTC 3 cut(s) 581, 810, 843
Eco105I TACGTA 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 1133
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 731
EcoRII CCWGG 3 cut(s) 217, 912, 1144
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 4 cut(s) 55, 601, 995, 1176
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 51, 597, 991, 1172
FauI CCCGC 2 cut(s) 643, 1060
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 933, 936, 984
FokI GGATG 4 cut(s) 235, 445, 748, 788
Fsp4HI GCNGC 3 cut(s) 933, 936, 984
FspBI CTAG 6 cut(s) 32, 264, 603, 624, 867, 1211
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 3 cut(s) 933, 936, 984
GsuI CTGGAG 1 cut(s) 1128
HapII CCGG 3 cut(s) 732, 762, 1196
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 4 cut(s) 55, 601, 995, 1176
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HindIII AAGCTT 2 cut(s) 152, 405
HpaII CCGG 3 cut(s) 732, 762, 1196
HphI GGTGA 3 cut(s) 40, 888, 1160
Hpy166II GTNNAC 2 cut(s) 579, 1133
Hpy188I TCNGA 4 cut(s) 127, 199, 714, 1116
Hpy188III TCNNGA 6 cut(s) 20, 139, 204, 264, 343, 680
Hpy8I GTNNAC 2 cut(s) 579, 1133
HpyAV CCTTC 3 cut(s) 167, 1005, 1145
HpyCH4III ACNGT 4 cut(s) 429, 557, 1082, 1224
HpyCH4IV ACGT 3 cut(s) 307, 540, 1030
HpyCH4V TGCA 4 cut(s) 436, 476, 932, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 448, 647, 666, 941, 992, 1001, 1100
HpyF3I CTNAG 3 cut(s) 341, 888, 1059
HpySE526I ACGT 3 cut(s) 307, 540, 1030
Hsp92II CATG 4 cut(s) 55, 601, 995, 1176
HspAI GCGC 1 cut(s) 1248
KpnI GGTACC 1 cut(s) 1181
Ksp22I TGATCA 1 cut(s) 988
KspI CCGCGG 1 cut(s) 905
Kzo9I GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
LmnI GCTCC 4 cut(s) 78, 284, 949, 1147
Lsp1109I GCAGC 3 cut(s) 922, 944, 995
LweI GCATC 1 cut(s) 423
MaeI CTAG 6 cut(s) 32, 264, 603, 624, 867, 1211
MaeII ACGT 3 cut(s) 307, 540, 1030
MaeIII GTNAC 4 cut(s) 626, 726, 894, 1186
MalI GATC 9 cut(s) 103, 129, 190, 414, 421, 711, 884, 990, 1113
MbiI CCGCTC 1 cut(s) 669
MboI GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
MboII GAAGA 9 cut(s) 122, 154, 183, 186, 191, 598, 827, 860, 874
MflI RGATCY 2 cut(s) 188, 882
MluCI AATT 2 cut(s) 1231, 1243
MlyI GAGTC 3 cut(s) 131, 333, 494
MnlI CCTC 4 cut(s) 27, 700, 738, 741
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 3 cut(s) 242, 1167, 1230
MslI CAYNNNNRTG 2 cut(s) 393, 1198
MspA1I CMGCKG 3 cut(s) 904, 935, 986
MspI CCGG 3 cut(s) 732, 762, 1196
MspR9I CCNGG 5 cut(s) 219, 732, 733, 914, 1146
MvaI CCWGG 3 cut(s) 219, 914, 1146
MvnI CGCG 1 cut(s) 904
MwoI GCNNNNNNNGC 7 cut(s) 448, 647, 666, 941, 992, 1001, 1100
NciI CCSGG 2 cut(s) 732, 733
NdeII GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
NlaIII CATG 4 cut(s) 55, 601, 995, 1176
NlaIV GGNNCC 3 cut(s) 945, 1143, 1179
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 894
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 601
NspV TTCGAA 2 cut(s) 6, 319
PasI CCCWGGG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PkrI GCNGC 3 cut(s) 934, 937, 985
PleI GAGTC 3 cut(s) 130, 333, 493
PpsI GAGTC 3 cut(s) 130, 333, 493
Ppu21I YACGTR 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 217, 912, 1144
PspGI CCWGG 3 cut(s) 217, 912, 1144
PspN4I GGNNCC 3 cut(s) 945, 1143, 1179
PspPI GGNCC 1 cut(s) 1133
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 188, 882
PvuII CAGCTG 2 cut(s) 935, 986
RsaI GTAC 2 cut(s) 149, 1179
RsaNI GTAC 2 cut(s) 148, 1178
RseI CAYNNNNRTG 2 cut(s) 393, 1198
SacII CCGCGG 1 cut(s) 905
SaqAI TTAA 3 cut(s) 242, 1167, 1230
SatI GCNGC 3 cut(s) 933, 936, 984
Sau3AI GATC 9 cut(s) 101, 127, 188, 412, 419, 709, 882, 988, 1111
Sau96I GGNCC 1 cut(s) 1133
SchI GAGTC 3 cut(s) 131, 333, 494
ScrFI CCNGG 5 cut(s) 219, 732, 733, 914, 1146
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 3 cut(s) 495, 547, 930
Sfr303I CCGCGG 1 cut(s) 905
SfuI TTCGAA 2 cut(s) 6, 319
SgrBI CCGCGG 1 cut(s) 905
SinI GGWCC 1 cut(s) 1133
SmaI CCCGGG 1 cut(s) 733
SmiMI CAYNNNNRTG 2 cut(s) 393, 1198
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 541
Sse9I AATT 2 cut(s) 1231, 1243
SspMI CTAG 6 cut(s) 32, 264, 603, 624, 867, 1211
StyD4I CCNGG 5 cut(s) 217, 730, 731, 912, 1144
TaaI ACNGT 4 cut(s) 429, 557, 1082, 1224
TaiI ACGT 3 cut(s) 310, 543, 1033
TaqI TCGA 5 cut(s) 6, 319, 422, 665, 1073
TasI AATT 2 cut(s) 1231, 1243
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 3 cut(s) 242, 1167, 1230
Tru9I TTAA 3 cut(s) 242, 1167, 1230
TseFI GTSAC 1 cut(s) 894
TseI GCWGC 3 cut(s) 932, 935, 983
Tsp45I GTSAC 1 cut(s) 894
TspDTI ATGAA 6 cut(s) 239, 411, 608, 752, 1091, 1147
TspGWI ACGGA 2 cut(s) 645, 936
TspMI CCCGGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 1133
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 601
XmaI CCCGGG 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 578
XspI CTAG 6 cut(s) 32, 264, 603, 624, 867, 1211
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.