FvH4_4g31561

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30657499 .. 30661557
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31561.t3

Sequence Viewer

Length: 1344 bp
ATGTTGGAGGGTCGGTCCTGCTTGCTTTCGAGGGTGTTTTCGAGCTCCTGCCAGCAGCCAGAGGGCAACTGGCCTTACAGGATGACCTTTCATCAGCTCAGAGTGGATATTGCCAATGGAAAGCGGCCATTGGAGTTTGATGGTGACGATGATGATGAAGAGAATCGAGACCGGAAGTTGTGTAAGCTACTGGATTGCTGTGACATGGTGGAGACGGCTCAACCTTCTTCTTGTGAGCAATCCGAAGATGAGAGTAATCAGGATGGGGCTGCTTCGTCGGATTCAGACTCCCTTATACATCGGATTGGGCGGGACAACTCCATCAGCTGCTTAATTCACTGCTCGAGGTCCGATTATGGTTCCATTGCCTCATTGAACAAGAGCTTCTGGTCATTAGTTAGGACTGGGGAGCTCTATAAGCTGAGGAGGCAGAATGATGTCATTGAGCACTGGATTTATTTTTCTTGCCACCTACTTGAATGGGAAGCATTTGATCCCAATCGGGGAAAGTGGATGCACTTGCCGAGAATGACTTCCAATGACTGCTTCATGTGTTCCGACAAGGAGTCCCTGGCTGTAGGCACTGAGCTTCTTGTATTTGGTAAGGAGGTCACTGCCCATGTAATCTTTCGGTACAGTATTTTAACAAACTCTTGGTCTTCTGGAATGAGGATGAATGCCCCAAGATGCTTGTTTGGGTCTGCAAGCCTCAAGGAGATTGCAATTTTGGCAGGTGGTTGTGACTCACAGGGAAAAATACTCAGCTCTGCGGAGCTATACAATTCCGAGACTCAGACTTGGGAACTCCTCCCGGACATGAACAAGCCTCGAAAGATGTGTTCTGGGGTTTTTATGGATGAAAAGTTTTATGTTATTGGTGGGATTGGGGGAAGTGATTCAAAGGTTCTTACTTGTGGAGAAGAGTATGATTTAAGGACGAAAAAATGGACAGAAATACCTAACATGTCTCCTGGACGGAGTGGTGCAGCCAGTGAGACTGAGATGCCTGCAACTGCTGGTGCACCGCCTCTGGTTGCAGTGGTAAATAATGACTTATACGCAGCTGACTATGCTGACATGGAGGTGAGAAAGTATGACAAAGAAAGAAGATTGTGGATCACAGTGGGAAGATTGCCTGAGCGGGCAGGCTCAATGAATGGTTGGGGGCTCGCTTTCAGGGCTTGTGGGGATCGTCTTATTGTCATCGGAGGGCCTAGGAATGTGGGTGAAGGTTTCATCGAGATCAATGCTTGGGTTCCGAGTGAAGGTCCTCCACAGTGGAACTTGCTTGCGAGAAAGCAATCTGGTAACTTTGTCTATAACTGTGCTGTAATGGGATGCTGA

Protein Analysis

448

Amino Acids

50.0

Weight (kDa)

5.25

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 154 - 323 8.3e-08 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 164 - 328 1.1e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 187 - 402 6.6e-13 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 206 - 328 4.9e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 228 - 274 8e-10 Kelch motif
Kelch_1 PF01344 276 - 323 1.7e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 722
AccBSI CCGCTC 1 cut(s) 1141
AciI CCGC 5 cut(s) 124, 310, 770, 1025, 1141
AclWI GGATC 3 cut(s) 488, 1124, 1197
AcoI YGGCCR 1 cut(s) 125
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 503, 1265
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 3 cut(s) 376, 479, 900
AhdI GACNNNNNGTC 1 cut(s) 565
AjnI CCWGG 2 cut(s) 570, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
Alw21I GWGCWC 4 cut(s) 47, 414, 450, 1024
Alw26I GTCTC 5 cut(s) 162, 206, 782, 972, 989
Alw44I GTGCAC 1 cut(s) 1020
AlwI GGATC 3 cut(s) 488, 1124, 1197
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 3 cut(s) 71, 125, 1211
ApaLI GTGCAC 1 cut(s) 1020
ApeKI GCWGC 5 cut(s) 55, 269, 327, 986, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 2 cut(s) 532, 895
AspA2I CCTAGG 1 cut(s) 1214
AspS9I GGNCC 4 cut(s) 15, 348, 1211, 1268
AsuC2I CCSGG 1 cut(s) 812
AsuHPI GGTGA 3 cut(s) 155, 1096, 1238
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 15, 348, 1268
AvrII CCTAGG 1 cut(s) 1214
BaeGI GKGCMC 1 cut(s) 1024
BanII GRGCYC 3 cut(s) 47, 414, 1170
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 4 cut(s) 47, 414, 450, 1024
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 5 cut(s) 67, 256, 314, 998, 1073
BccI CCATC 3 cut(s) 134, 257, 329
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 1229, 1263
BciT130I CCWGG 2 cut(s) 572, 972
BcnI CCSGG 1 cut(s) 812
BcoDI GTCTC 5 cut(s) 162, 206, 782, 972, 989
BfaI CTAG 1 cut(s) 1215
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 722
BisI GCNGC 6 cut(s) 56, 125, 270, 328, 987, 1062
BlnI CCTAGG 1 cut(s) 1214
BlsI GCNGC 6 cut(s) 57, 126, 271, 329, 988, 1063
Bme1390I CCNGG 3 cut(s) 572, 812, 972
Bme18I GGWCC 3 cut(s) 15, 348, 1268
BmeRI GACNNNNNGTC 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 4 cut(s) 15, 348, 1211, 1268
BmiI GGNNCC 2 cut(s) 361, 1257
BmrFI CCNGG 3 cut(s) 572, 812, 972
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 4 cut(s) 504, 677, 993, 1328
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 651
Bpu10I CCTNAGC 2 cut(s) 422, 1137
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 570, 1214
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 1265
Bse1I ACTGG 5 cut(s) 74, 195, 409, 455, 990
Bse3DI GCAATG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 572, 972
BseDI CCNNGG 2 cut(s) 570, 1214
BseGI GGATG 6 cut(s) 87, 268, 519, 678, 862, 1343
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 503, 1265
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 7 cut(s) 112, 413, 576, 775, 806, 990, 1128
BseNI ACTGG 5 cut(s) 74, 195, 409, 455, 990
BseRI GAGGAG 2 cut(s) 439, 797
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 5 cut(s) 67, 256, 314, 998, 1073
BsgI GTGCAG 1 cut(s) 1005
BshFI GGCC 3 cut(s) 73, 127, 1213
BsiHKAI GWGCWC 4 cut(s) 47, 414, 450, 1024
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 172, 812
BslFI GGGAC 2 cut(s) 326, 553
BslI CCNNNNNNNGG 2 cut(s) 503, 1265
BsmAI GTCTC 5 cut(s) 162, 206, 782, 972, 989
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 326, 553
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 3 cut(s) 73, 127, 1213
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 5 cut(s) 47, 414, 450, 1024, 1170
Bsp143I GATC 4 cut(s) 493, 1116, 1189, 1242
BspACI CCGC 5 cut(s) 124, 310, 770, 1025, 1141
BspANI GGCC 3 cut(s) 73, 127, 1213
BspCNI CTCAG 7 cut(s) 111, 414, 577, 774, 805, 991, 1129
BspLI GGNNCC 2 cut(s) 361, 1257
BspMI ACCTGC 1 cut(s) 722
BspPI GGATC 3 cut(s) 488, 1124, 1197
BspTNI GGTCTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 5 cut(s) 74, 195, 409, 455, 990
BssECI CCNNGG 2 cut(s) 570, 1214
BssMI GATC 4 cut(s) 493, 1116, 1189, 1242
BssT1I CCWWGG 1 cut(s) 1214
Bst2UI CCWGG 2 cut(s) 572, 972
Bst4CI ACNGT 4 cut(s) 638, 1123, 1278, 1325
Bst6I CTCTTC 2 cut(s) 153, 915
BstC8I GCNNGC 8 cut(s) 23, 53, 706, 1008, 1143, 1147, 1170, 1290
BstDEI CTNAG 7 cut(s) 98, 422, 585, 761, 792, 999, 1137
BstF5I GGATG 6 cut(s) 87, 268, 519, 678, 862, 1343
BstKTI GATC 4 cut(s) 496, 1119, 1192, 1245
BstMAI GTCTC 5 cut(s) 162, 206, 782, 972, 989
BstMBI GATC 4 cut(s) 493, 1116, 1189, 1242
BstMWI GCNNNNNNNGC 5 cut(s) 418, 427, 728, 1070, 1178
BstNI CCWGG 2 cut(s) 572, 972
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 3 cut(s) 570, 810, 970
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 5 cut(s) 67, 256, 314, 998, 1073
BstV2I GAAGAC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 73, 127, 1213
BtsCI GGATG 6 cut(s) 87, 268, 519, 678, 862, 1343
BtsI GCAGTG 3 cut(s) 337, 612, 1044
BtsIMutI CAGTG 8 cut(s) 337, 448, 582, 612, 997, 1044, 1128, 1283
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 8 cut(s) 23, 53, 706, 1008, 1143, 1147, 1170, 1290
Cfr13I GGNCC 4 cut(s) 15, 348, 1211, 1268
Csp6I GTAC 1 cut(s) 634
CviAII CATG 6 cut(s) 205, 550, 620, 817, 964, 1078
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 7 cut(s) 98, 422, 585, 761, 792, 999, 1137
DpnI GATC 4 cut(s) 495, 1118, 1191, 1244
DpnII GATC 4 cut(s) 493, 1116, 1189, 1242
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 153, 915
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 2 cut(s) 153, 915
Ecl136II GAGCTC 2 cut(s) 45, 412
Eco130I CCWWGG 1 cut(s) 1214
Eco24I GRGCYC 3 cut(s) 47, 414, 1170
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 3 cut(s) 15, 348, 1268
Eco53kI GAGCTC 2 cut(s) 45, 412
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 2 cut(s) 45, 412
EcoO109I RGGNCCY 2 cut(s) 1211, 1268
EcoRII CCWGG 2 cut(s) 570, 970
EcoT14I CCWWGG 1 cut(s) 1214
EcoT38I GRGCYC 3 cut(s) 47, 414, 1170
ErhI CCWWGG 1 cut(s) 1214
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 208, 553, 623, 820, 967, 1081
FaqI GGGAC 2 cut(s) 326, 553
FatI CATG 6 cut(s) 204, 549, 619, 816, 963, 1077
FauI CCCGC 2 cut(s) 303, 1134
Fnu4HI GCNGC 6 cut(s) 56, 125, 270, 328, 987, 1062
FokI GGATG 5 cut(s) 94, 275, 526, 685, 869
FriOI GRGCYC 3 cut(s) 47, 414, 1170
Fsp4HI GCNGC 6 cut(s) 56, 125, 270, 328, 987, 1062
FspBI CTAG 1 cut(s) 1215
GluI GCNGC 6 cut(s) 56, 125, 270, 328, 987, 1062
HaeIII GGCC 3 cut(s) 73, 127, 1213
HapII CCGG 2 cut(s) 172, 812
Hin1II CATG 6 cut(s) 208, 553, 623, 820, 967, 1081
HinfI GANTC 7 cut(s) 163, 281, 287, 566, 743, 790, 896
HpaII CCGG 2 cut(s) 172, 812
HphI GGTGA 3 cut(s) 155, 1096, 1238
Hpy166II GTNNAC 1 cut(s) 1022
Hpy188III TCNNGA 4 cut(s) 167, 260, 663, 1240
Hpy8I GTNNAC 1 cut(s) 1022
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 234, 1223, 1259
HpyCH4III ACNGT 4 cut(s) 638, 1123, 1278, 1325
HpyCH4V TGCA 7 cut(s) 517, 704, 722, 986, 1010, 1022, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 418, 427, 728, 1070, 1178
HpyF3I CTNAG 7 cut(s) 98, 422, 585, 761, 792, 999, 1137
Hsp92II CATG 6 cut(s) 208, 553, 623, 820, 967, 1081
Kzo9I GATC 4 cut(s) 493, 1116, 1189, 1242
LmnI GCTCC 3 cut(s) 50, 409, 772
Lsp1109I GCAGC 5 cut(s) 67, 256, 314, 998, 1073
LweI GCATC 4 cut(s) 504, 677, 993, 1328
MaeI CTAG 1 cut(s) 1215
MaeIII GTNAC 5 cut(s) 143, 200, 610, 740, 1307
MalI GATC 4 cut(s) 495, 1118, 1191, 1244
MbiI CCGCTC 1 cut(s) 1141
MboI GATC 4 cut(s) 493, 1116, 1189, 1242
MboII GAAGA 7 cut(s) 170, 219, 257, 651, 932, 1119, 1140
MhlI GDGCHC 5 cut(s) 47, 414, 450, 1024, 1170
MluCI AATT 3 cut(s) 333, 723, 781
MlyI GAGTC 4 cut(s) 281, 575, 737, 784
MmeI TCCRAC 2 cut(s) 258, 582
MroXI GAANNNNTTC 2 cut(s) 532, 895
MseI TTAA 3 cut(s) 332, 644, 932
MslI CAYNNNNRTG 1 cut(s) 1082
MspA1I CMGCKG 2 cut(s) 327, 1064
MspI CCGG 2 cut(s) 172, 812
MspR9I CCNGG 3 cut(s) 572, 812, 972
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 2 cut(s) 572, 972
MwoI GCNNNNNNNGC 5 cut(s) 418, 427, 728, 1070, 1178
NciI CCSGG 1 cut(s) 812
NdeII GATC 4 cut(s) 493, 1116, 1189, 1242
NlaIII CATG 6 cut(s) 208, 553, 623, 820, 967, 1081
NlaIV GGNNCC 2 cut(s) 361, 1257
NmeAIII GCCGAG 1 cut(s) 549
NmuCI GTSAC 4 cut(s) 143, 200, 610, 740
NspI RCATGY 1 cut(s) 967
PaeR7I CTCGAG 1 cut(s) 343
PaqCI CACCTGC 1 cut(s) 722
PciI ACATGT 1 cut(s) 963
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 532, 895
PfeI GAWTC 3 cut(s) 163, 281, 896
PfoI TCCNGGA 2 cut(s) 810, 970
PkrI GCNGC 6 cut(s) 57, 126, 271, 329, 988, 1063
PleI GAGTC 4 cut(s) 281, 574, 737, 784
PpsI GAGTC 4 cut(s) 281, 574, 737, 784
PpuMI RGGWCCY 1 cut(s) 1268
PscI ACATGT 1 cut(s) 963
Psp124BI GAGCTC 2 cut(s) 47, 414
Psp5II RGGWCCY 1 cut(s) 1268
Psp6I CCWGG 2 cut(s) 570, 970
PspGI CCWGG 2 cut(s) 570, 970
PspN4I GGNNCC 2 cut(s) 361, 1257
PspPI GGNCC 4 cut(s) 15, 348, 1211, 1268
PspPPI RGGWCCY 1 cut(s) 1268
PspXI VCTCGAGB 1 cut(s) 343
PvuII CAGCTG 2 cut(s) 327, 1064
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 2 cut(s) 47, 414
SaqAI TTAA 3 cut(s) 332, 644, 932
SatI GCNGC 6 cut(s) 56, 125, 270, 328, 987, 1062
Sau3AI GATC 4 cut(s) 493, 1116, 1189, 1242
Sau96I GGNCC 4 cut(s) 15, 348, 1211, 1268
SchI GAGTC 4 cut(s) 281, 575, 737, 784
ScrFI CCNGG 3 cut(s) 572, 812, 972
SduI GDGCHC 5 cut(s) 47, 414, 450, 1024, 1170
SfaNI GCATC 4 cut(s) 504, 677, 993, 1328
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 3 cut(s) 15, 348, 1268
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 2 cut(s) 343, 710
SmoI CTYRAG 2 cut(s) 343, 710
Sse9I AATT 3 cut(s) 333, 723, 781
SsiI CCGC 5 cut(s) 124, 310, 770, 1025, 1141
SspMI CTAG 1 cut(s) 1215
SstI GAGCTC 2 cut(s) 47, 414
StyD4I CCNGG 3 cut(s) 570, 810, 970
StyI CCWWGG 1 cut(s) 1214
TaaI ACNGT 4 cut(s) 638, 1123, 1278, 1325
TaqI TCGA 6 cut(s) 29, 41, 166, 344, 829, 1239
TasI AATT 3 cut(s) 333, 723, 781
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 3 cut(s) 163, 281, 896
Tru1I TTAA 3 cut(s) 332, 644, 932
Tru9I TTAA 3 cut(s) 332, 644, 932
TscAI CASTG 8 cut(s) 344, 455, 589, 619, 997, 1044, 1128, 1283
TseFI GTSAC 4 cut(s) 143, 200, 610, 740
TseI GCWGC 5 cut(s) 55, 269, 327, 986, 1061
Tsp45I GTSAC 4 cut(s) 143, 200, 610, 740
TspDTI ATGAA 8 cut(s) 80, 171, 538, 689, 833, 873, 1169, 1225
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 8 cut(s) 344, 455, 589, 619, 997, 1044, 1128, 1283
VneI GTGCAC 1 cut(s) 1020
VpaK11BI GGWCC 3 cut(s) 15, 348, 1268
XceI RCATGY 1 cut(s) 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
XhoI CTCGAG 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 1214
XmnI GAANNNNTTC 2 cut(s) 532, 895
XspI CTAG 1 cut(s) 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.