AT2G02870

kelch repeat-containing F-box family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
837801 .. 840398
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02870.2

Sequence Viewer

Length: 1404 bp
ATGTTGGAAGATCGATCACCAGATTCGTGTTTGAGTACAAGGGTTTTCTCAAGCTCTCGTCTTTCTGAATCAAACTGGTCTAACTCTTACATGTATCCAGAGGATGATGATAAGCTCCTCGGTAATGGTAAAAGAGCTTTGGAGGTTGTTGGTGAGGTTAGACAGACCAAATCACTTAAATTAATGGGTTTTTCGATTATCTATGATAGCGATTCTTCTGACTATTCATTGAGTGGTGGGGAGGAGCAAGCTGATGCTGCTATTGGTGATGGCTCATCATCAAGGCAGGAGCAAGAACAGCAATCTGATTTTAATGACAATGGTGGTGATTCTTCGGATTCTCACTCTCTTATCAATGAGATTGGGAGGGACAATTCGATCGACTGTTTGATCCGTTGCTCGAGGTCTGATTATGGTTCTATTGCTTCCTTGAACCGGAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTATAGATTAAGGCGACAAAACGGGTTTGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTTGGAATGGGTTGCGTTTGATCCTGTTGAGAGAAGGTGGATGCAGTTGCCAACTATGCCTTCCAGTGTTACCTTCATGTGTGCAGATAAGGAGTCTCTGGCCGTTGGGACGGACCTGCTTGTCTTAGGAAAAGATGATTTTTCTTCTCATGTAATATACAGATACAGTCTACTCACTAATTCTTGGTCTTCTGGTATGAAGATGAACTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTGGAGAGATTGCTATATTCGCTGGTGGATGTGATTCCCAGGGAAAGATTCTTGATTTTGCGGAAATGTATAATTCTGAGCTTCAAACTTGGATAACTCTTCCAAGGATGAACAAACCGAGGAAGATGTGTTCGGGAGTTTTTATGGACGGGAAGTTCTATGTAATTGGAGGAATCGGTGGTGCTGATTCTAAAGGCTTGACCTGCGGTGAAGAATATGATTTGGAGACCAAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAGAAGCCGTGCTGATCAAGCTGATATGTCACCAGCAGCGGAAGCACCGCCTCTTGTTGCGGTTGTGAATAACCAATTATACGCTGCTGATCACGCCGATATGGAAGTGAGGAAGTACGATAAGGAGAATAAGAAGTGGTTAACTGTTGGAAGATTGCCTGAAAGAGCTGGCTCGGTAAACGGATGGGGACTTGCTTTTAGAGCTTGTGGAGAGCGGTTAATTGTTATTGGTGGACCGAAGTGCTCAGGAGGTGGTTTCATAGAGCTAAATTCTTGGATACCGAGCGACGGTGGTCCACCTCAGTGGACACTACTTGACAGGAAACATTCTCCTACTTTCGTATACAATTGTGCAGTGATGGGTTGCTAA

Protein Analysis

467

Amino Acids

51.7

Weight (kDa)

5.06

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 182 - 343 5.4e-08 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 182 - 343 7.1e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 196 - 421 5.3e-12 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 260 - 400 2.5e-10 Calicin, beta-propeller domain
Kelch_1 PF01344 296 - 342 1.5e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
Acc36I ACCTGC 2 cut(s) 654, 980
AccB7I CCANNNNNTGG 2 cut(s) 532, 1005
AccBSI CCGCTC 1 cut(s) 1249
AccI GTMKAC 2 cut(s) 700, 1377
AccII CGCG 1 cut(s) 764
AciI CCGC 7 cut(s) 762, 830, 975, 1073, 1082, 1094, 1249
AclWI GGATC 4 cut(s) 385, 545, 753, 766
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 2 cut(s) 439, 1303
AfaI GTAC 2 cut(s) 37, 1151
AfiI CCNNNNNNNGG 5 cut(s) 435, 451, 532, 1005, 1322
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 433, 503, 854
AjnI CCWGG 1 cut(s) 807
AjuI GAANNNNNNNTTGG 2 cut(s) 574, 606
AleI CACNNNNGTG 1 cut(s) 1336
AloI GAACNNNNNNTCC 6 cut(s) 430, 462, 883, 908, 915, 940
Alw21I GWGCWC 1 cut(s) 1280
Alw26I GTCTC 2 cut(s) 630, 989
AlwI GGATC 4 cut(s) 385, 545, 753, 766
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 3 cut(s) 257, 1070, 1118
ApoI RAATTY 2 cut(s) 439, 1303
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 643, 1268, 1328
AsuHPI GGTGA 6 cut(s) 9, 164, 278, 338, 989, 1056
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 3 cut(s) 643, 1268, 1328
BamHI GGATCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 1280
BbvI GCAGC 3 cut(s) 244, 1082, 1105
BccI CCATC 3 cut(s) 263, 1212, 1387
BceAI ACGGC 2 cut(s) 617, 1026
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 2 cut(s) 105, 1305
BclI TGATCA 2 cut(s) 1048, 1123
BcoDI GTCTC 2 cut(s) 630, 989
BfuAI ACCTGC 2 cut(s) 654, 980
BfuI GTATCC 2 cut(s) 105, 1305
BisI GCNGC 3 cut(s) 258, 1071, 1119
BlsI GCNGC 3 cut(s) 259, 1072, 1120
Bme1390I CCNGG 1 cut(s) 809
Bme18I GGWCC 3 cut(s) 643, 1268, 1328
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 643, 1268, 1328
BmiI GGNNCC 1 cut(s) 760
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 2 cut(s) 244, 561
BoxI GACNNNNGTC 1 cut(s) 1326
BpiI GAAGAC 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 1279
BpuEI CTTGAG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 7 cut(s) 118, 743, 769, 807, 808, 872, 887
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 5 cut(s) 435, 451, 532, 1005, 1322
Bse1I ACTGG 2 cut(s) 80, 594
BseBI CCWGG 1 cut(s) 809
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 7 cut(s) 118, 743, 769, 807, 808, 872, 887
BseGI GGATG 5 cut(s) 109, 576, 803, 882, 1223
BseLI CCNNNNNNNGG 5 cut(s) 435, 451, 532, 1005, 1322
BseMII CTCAG 3 cut(s) 837, 1293, 1349
BseNI ACTGG 2 cut(s) 80, 594
BseRI GAGGAG 2 cut(s) 107, 257
BseXI GCAGC 3 cut(s) 244, 1082, 1105
BsgI GTGCAG 1 cut(s) 633
Bsh1236I CGCG 1 cut(s) 764
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 1280
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 3 cut(s) 383, 652, 1236
BslI CCNNNNNNNGG 5 cut(s) 435, 451, 532, 1005, 1322
BsmAI GTCTC 2 cut(s) 630, 989
BsmFI GGGAC 3 cut(s) 383, 652, 1236
BsnI GGCC 1 cut(s) 632
Bso31I GGTCTC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 1280
Bsp143I GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
BspACI CCGC 7 cut(s) 762, 830, 975, 1073, 1082, 1094, 1249
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 3 cut(s) 838, 1292, 1348
BspDI ATCGAT 1 cut(s) 13
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 1 cut(s) 760
BspMI ACCTGC 2 cut(s) 654, 980
BspPI GGATC 4 cut(s) 385, 545, 753, 766
BspTNI GGTCTC 1 cut(s) 989
BsrBI CCGCTC 1 cut(s) 1249
BsrI ACTGG 2 cut(s) 80, 594
BssECI CCNNGG 7 cut(s) 118, 743, 769, 807, 808, 872, 887
BssMI GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
BssNAI GTATAC 1 cut(s) 1378
BssT1I CCWWGG 2 cut(s) 769, 872
Bst1107I GTATAC 1 cut(s) 1378
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 4 cut(s) 386, 698, 1180, 1325
Bst6I CTCTTC 1 cut(s) 873
BstC8I GCNNGC 4 cut(s) 249, 527, 766, 1204
BstDEI CTNAG 4 cut(s) 655, 846, 1279, 1335
BstF5I GGATG 5 cut(s) 109, 576, 803, 882, 1223
BstFNI CGCG 1 cut(s) 764
BstKTI GATC 8 cut(s) 13, 17, 381, 393, 553, 761, 1051, 1126
BstMAI GTCTC 2 cut(s) 630, 989
BstMBI GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 9 cut(s) 257, 298, 586, 788, 972, 1052, 1076, 1127, 1235
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 94
BstPAI GACNNNNGTC 1 cut(s) 1326
BstSCI CCNGG 1 cut(s) 807
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 3 cut(s) 244, 1082, 1105
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 1338
BstYI RGATCY 1 cut(s) 758
BstZ17I GTATAC 1 cut(s) 1378
Bsu15I ATCGAT 1 cut(s) 13
BsuI GTATCC 2 cut(s) 105, 1305
BsuRI GGCC 1 cut(s) 632
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 5 cut(s) 109, 576, 803, 882, 1223
BtsI GCAGTG 1 cut(s) 1395
BtsIMutI CAGTG 3 cut(s) 601, 1343, 1395
BveI ACCTGC 2 cut(s) 654, 980
Cac8I GCNNGC 4 cut(s) 249, 527, 766, 1204
Cfr13I GGNCC 3 cut(s) 643, 1268, 1328
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 2 cut(s) 36, 1150
CviAII CATG 3 cut(s) 91, 607, 680
CviQI GTAC 2 cut(s) 36, 1150
DdeI CTNAG 4 cut(s) 655, 846, 1279, 1335
DpnI GATC 8 cut(s) 12, 16, 380, 392, 552, 760, 1050, 1125
DpnII GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco130I CCWWGG 2 cut(s) 769, 872
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 3 cut(s) 643, 1268, 1328
Eco88I CYCGRG 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 2 cut(s) 769, 872
ErhI CCWWGG 2 cut(s) 769, 872
FaeI CATG 3 cut(s) 94, 610, 683
FaqI GGGAC 3 cut(s) 383, 652, 1236
FatI CATG 3 cut(s) 90, 606, 679
FbaI TGATCA 2 cut(s) 1048, 1123
FblI GTMKAC 2 cut(s) 700, 1377
Fnu4HI GCNGC 3 cut(s) 258, 1071, 1119
FokI GGATG 5 cut(s) 116, 583, 810, 889, 1230
Fsp4HI GCNGC 3 cut(s) 258, 1071, 1119
GluI GCNGC 3 cut(s) 258, 1071, 1119
HaeIII GGCC 1 cut(s) 632
HapII CCGG 1 cut(s) 436
Hin1II CATG 3 cut(s) 94, 610, 683
HincII GTYRAC 1 cut(s) 1176
HindII GTYRAC 1 cut(s) 1176
HpaI GTTAAC 1 cut(s) 1176
HpaII CCGG 1 cut(s) 436
HphI GGTGA 6 cut(s) 9, 164, 278, 338, 989, 1056
Hpy166II GTNNAC 8 cut(s) 514, 701, 1176, 1213, 1268, 1331, 1341, 1378
Hpy188I TCNGA 7 cut(s) 67, 220, 307, 337, 409, 744, 847
Hpy188III TCNNGA 4 cut(s) 98, 821, 903, 1281
Hpy8I GTNNAC 8 cut(s) 514, 701, 1176, 1213, 1268, 1331, 1341, 1378
Hpy99I CGWCG 1 cut(s) 1325
HpyAV CCTTC 3 cut(s) 558, 600, 613
HpyCH4III ACNGT 4 cut(s) 386, 698, 1180, 1325
HpyCH4V TGCA 3 cut(s) 574, 614, 1388
HpyF10VI GCNNNNNNNGC 9 cut(s) 257, 298, 586, 788, 972, 1052, 1076, 1127, 1235
HpyF3I CTNAG 4 cut(s) 655, 846, 1279, 1335
Hsp92II CATG 3 cut(s) 94, 610, 683
Ksp22I TGATCA 2 cut(s) 1048, 1123
KspAI GTTAAC 1 cut(s) 1176
Kzo9I GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
LmnI GCTCC 3 cut(s) 120, 244, 289
Lsp1109I GCAGC 3 cut(s) 244, 1082, 1105
LweI GCATC 2 cut(s) 244, 561
MaeIII GTNAC 2 cut(s) 598, 1062
MalI GATC 8 cut(s) 12, 16, 380, 392, 552, 760, 1050, 1125
MbiI CCGCTC 1 cut(s) 1249
MboI GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
MfeI CAATTG 1 cut(s) 1381
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 1 cut(s) 1280
MlyI GAGTC 2 cut(s) 632, 1003
MmeI TCCRAC 1 cut(s) 1162
MseI TTAA 6 cut(s) 177, 182, 312, 479, 1175, 1253
MslI CAYNNNNRTG 1 cut(s) 1336
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 809
MunI CAATTG 1 cut(s) 1381
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 9 cut(s) 257, 298, 586, 788, 972, 1052, 1076, 1127, 1235
NdeII GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
NlaIII CATG 3 cut(s) 94, 610, 683
NlaIV GGNNCC 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 1062
NspI RCATGY 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 1336
PaeR7I CTCGAG 1 cut(s) 400
PasI CCCWGGG 1 cut(s) 808
PciI ACATGT 1 cut(s) 90
PfeI GAWTC 9 cut(s) 23, 68, 212, 329, 338, 803, 817, 942, 956
PflMI CCANNNNNTGG 2 cut(s) 532, 1005
PkrI GCNGC 3 cut(s) 259, 1072, 1120
Ple19I CGATCG 1 cut(s) 381
PleI GAGTC 2 cut(s) 631, 1003
PpsI GAGTC 2 cut(s) 631, 1003
PscI ACATGT 1 cut(s) 90
PshAI GACNNNNGTC 1 cut(s) 1326
PshBI ATTAAT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 1 cut(s) 760
PspPI GGNCC 3 cut(s) 643, 1268, 1328
PspXI VCTCGAGB 1 cut(s) 400
PsuI RGATCY 1 cut(s) 758
PvuI CGATCG 1 cut(s) 381
RsaI GTAC 2 cut(s) 37, 1151
RsaNI GTAC 2 cut(s) 36, 1150
RseI CAYNNNNRTG 1 cut(s) 1336
SaqAI TTAA 6 cut(s) 177, 182, 312, 479, 1175, 1253
SatI GCNGC 3 cut(s) 258, 1071, 1119
Sau3AI GATC 8 cut(s) 10, 14, 378, 390, 550, 758, 1048, 1123
Sau96I GGNCC 3 cut(s) 643, 1268, 1328
SchI GAGTC 2 cut(s) 632, 1003
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 1 cut(s) 1280
SfaNI GCATC 2 cut(s) 244, 561
Sfr274I CTCGAG 1 cut(s) 400
SinI GGWCC 3 cut(s) 643, 1268, 1328
SlaI CTCGAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 1336
SmlI CTYRAG 2 cut(s) 49, 400
SmoI CTYRAG 2 cut(s) 49, 400
SsiI CCGC 7 cut(s) 762, 830, 975, 1073, 1082, 1094, 1249
StyD4I CCNGG 1 cut(s) 807
StyI CCWWGG 2 cut(s) 769, 872
TaaI ACNGT 4 cut(s) 386, 698, 1180, 1325
TaqI TCGA 5 cut(s) 13, 194, 377, 381, 401
TaqII GACCGA 1 cut(s) 1285
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 9 cut(s) 23, 68, 212, 329, 338, 803, 817, 942, 956
Tru1I TTAA 6 cut(s) 177, 182, 312, 479, 1175, 1253
Tru9I TTAA 6 cut(s) 177, 182, 312, 479, 1175, 1253
TscAI CASTG 3 cut(s) 601, 1343, 1395
TseFI GTSAC 1 cut(s) 1062
TseI GCWGC 3 cut(s) 257, 1070, 1118
Tsp45I GTSAC 1 cut(s) 1062
TspDTI ATGAA 6 cut(s) 216, 595, 743, 749, 893, 1282
TspGWI ACGGA 4 cut(s) 383, 434, 656, 1230
TspRI CASTG 3 cut(s) 601, 1343, 1395
Van91I CCANNNNNTGG 2 cut(s) 532, 1005
VpaK11BI GGWCC 3 cut(s) 643, 1268, 1328
VspI ATTAAT 1 cut(s) 182
XapI RAATTY 2 cut(s) 439, 1303
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 400
XmiI GTMKAC 2 cut(s) 700, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.