Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013060

Physical Location & Seq

Genomic Coordinates Reverse (-)

9966186 .. 9968495

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGTTATCTCTCTTGCAACGGCGAATCCGCCGTCGCAATCTGCGATACTTATAACTGGAATCCTCGTCGACGATCTAAAGTACCGGAGAAACGTCATCCTCCTAAGCTTCGGGTTTTCAACTACGACGAACTCGCCGTCGCTACTAACGGCTTCTCCGCCAATAACTTCCTCGGAAAAGGAAGTCACGGCAGAGTTTACAAAGCAGTTCTCGACGACGGAAAGCTTCTCGCCGCCGTCAAGAGAACAACAATCACCACTACCGTTGGTAATAACAATAACAACGTGAGTCAGGTAGACAATGAGATCGAGATTCTTTCACGGGTTCGTCACCGTTGGATGGTCAACTTAATCGGTTACTGCGTTGACCACCGGAGGAAAACAAAGCTGTTAGTCGTCGAGTACATGCCTAACGGTACGCTTCACGATCAGTTACATTCTCGTAGTTCGTTAGATTCACGGTTAAGTAGTTGGAATCGGAGAATTAAACACGCGCTTCAGATCGCGATTGCTGTCCACGCTCTTCACACCGCAGAGACTCAAGTGATCCACCGTGACATTAAATCGTGTAACGTTTTAATAGACGGTGACGGTAACGCTAGGTTAGCTGATTTCGGATTAGCATTGATCGGAAACGTTGACGATGAGCGTTTGAAATATACTCCGCCGGCGGGTACGTTGGGATATTTAGATCCGTCGTACTTAGCACCGGCGGACTTGACGGCTAAGAGCGATGTTTTCAGCTTTGGGATATTGTTGTTGGAGATTATTAGTGGTAGAGAAGCCATTGATTTGAATTATAGTCCGTCGTGTATCGTTGATTGGGCGGTGCCGCTTATCAAACGCGGCGATTACGACGCGATTTGTGATTTGAAGATTAAGAACCGTCCTTATTACGCCGTGATTCGGAAGTTGGCCGTTATGGCGGCTAGGTGTGTTAGATCGACGGCGAAGAAACGTCCAGATATGTTAGAGGTTGTTGAGTGTTTGAAAACGGTGAGGCAGTTATCTCCGGCGTGGAATAAACTGCGGCGGAGGAGTGAAGAGAGATCGGAAAATGTTTTGGCGGTTGAGGAAGAGAAGGAAGAGATTCATGTGAGGATTGTGAGAGGAGGAAGCAGGAAGAATCGGAAGGTATCGAACGTGACGACGAGTGTGGATGATGTTTACGAGAGATTAGTTCCGGAGGAAACGCTGCCGTTTCGTCGTCGGAATTTTGTGCTGAGATCGAGATCAGTAGGAGCGAAAGTTGGACCGGATCCATACGACGGGTTTGGTGATGAGACGGTGGTTACAATGAGATTACTTATTGAGAAAGAAAGACCGGTGACGACGGCAGCGATGAGGCTGAGTAAGTCGAGGTCGGTGGGGATTGTACGTAGTCATAAAACGGCGTCGCGGAAGAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

470

Amino Acids

53.08

Weight (kDa)

9.7

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 325	2.1e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 330	9e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28390 AT1G28390
fragaria_vesca	FvH4_5g35880
malus_domestica	MD08G1192400.v1.1 MD15G1381000.v1.1
prunus_persica	Prupe.1G527200_v2.0.a1
pyrus_communis	pycom08g16610 pycom15g34150
rosa_chinensis	RchiOBHm_Chr7g0237591
rosa_laevigata	RLG00000000986
rosa_multiflora	Rmu_sc0007860.1_g000005
rosa_roxburghii	Rroxscaffold_3G00223960
rosa_rugosa	Rorug07G0305600
rosa_samantha	Rh7AG461900 Rh7BG432200 Rh7CG479000 Rh7DG448200
rosa_wichuraiana	Rw7G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	829
AccI	GTMKAC	2 cut(s)	70, 297
AccII	CGCG	5 cut(s)	494, 506, 846, 860, 1399
AccIII	TCCGGA	1 cut(s)	1183
AclI	AACGTT	2 cut(s)	573, 636
AclWI	GGATC	4 cut(s)	541, 686, 1253, 1266
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	1 cut(s)	1213
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	1394
AfaI	GTAC	6 cut(s)	84, 404, 418, 676, 701, 1377
AfiI	CCNNNNNNNGG	4 cut(s)	340, 671, 906, 1268
AgeI	ACCGGT	1 cut(s)	1324
AgsI	TTSAA	5 cut(s)	121, 655, 796, 874, 991
AluBI	AGCT	5 cut(s)	109, 226, 388, 608, 744
AluI	AGCT	5 cut(s)	109, 226, 388, 608, 744
Alw26I	GTCTC	2 cut(s)	530, 1277
AlwI	GGATC	4 cut(s)	541, 686, 1253, 1266
Aor13HI	TCCGGA	1 cut(s)	1183
AoxI	GGCC	1 cut(s)	915
ApeKI	GCWGC	2 cut(s)	1195, 1337
ApoI	RAATTY	1 cut(s)	1213
ArsI	GACNNNNNNTTYG	4 cut(s)	18, 50, 123, 155
AsiGI	ACCGGT	1 cut(s)	1324
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	1253
AsuHPI	GGTGA	6 cut(s)	247, 323, 599, 1009, 1289, 1339
AvaII	GGWCC	1 cut(s)	1253
BamHI	GGATCC	1 cut(s)	1258
BanI	GGYRCC	1 cut(s)	829
BbvI	GCAGC	2 cut(s)	1182, 1349
BccI	CCATC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	530, 1277
BfaI	CTAG	2 cut(s)	600, 930
BglI	GCCNNNNNGGC	1 cut(s)	923
BisI	GCNGC	7 cut(s)	234, 833, 847, 927, 1031, 1196, 1338
BlsI	GCNGC	7 cut(s)	235, 834, 848, 928, 1032, 1197, 1339
Bme18I	GGWCC	1 cut(s)	1253
BmgT120I	GGNCC	1 cut(s)	1253
BmiI	GGNNCC	2 cut(s)	831, 1260
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	1231
BsaHI	GRCGYC	1 cut(s)	1394
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	5 cut(s)	85, 372, 1183, 1255, 1324
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 1233, 1263
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 671, 906, 1268
Bse118I	RCCGGY	3 cut(s)	667, 709, 1324
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	1231
BseAI	TCCGGA	1 cut(s)	1183
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	3 cut(s)	97, 345, 1165
BseJI	GATNNNNATC	1 cut(s)	1231
BseLI	CCNNNNNNNGG	4 cut(s)	340, 671, 906, 1268
BseMII	CTCAG	2 cut(s)	1214, 1340
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	1051, 1125
BseXI	GCAGC	2 cut(s)	1182, 1349
Bsh1236I	CGCG	5 cut(s)	494, 506, 846, 860, 1399
BshFI	GGCC	1 cut(s)	917
BshNI	GGYRCC	1 cut(s)	829
BshTI	ACCGGT	1 cut(s)	1324
BsiSI	CCGG	8 cut(s)	86, 373, 668, 710, 1013, 1184, 1256, 1325
BslI	CCNNNNNNNGG	4 cut(s)	340, 671, 906, 1268
BsmAI	GTCTC	2 cut(s)	530, 1277
BsmBI	CGTCTC	1 cut(s)	1277
BsnI	GGCC	1 cut(s)	917
Bsp13I	TCCGGA	1 cut(s)	1183
Bsp68I	TCGCGA	1 cut(s)	506
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	2 cut(s)	1215, 1341
BspEI	TCCGGA	1 cut(s)	1183
BspFNI	CGCG	5 cut(s)	494, 506, 846, 860, 1399
BspLI	GGNNCC	2 cut(s)	831, 1260
BspPI	GGATC	4 cut(s)	541, 686, 1253, 1266
BspQI	GCTCTTC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	829
BsrFI	RCCGGY	3 cut(s)	667, 709, 1324
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	3 cut(s)	667, 709, 1324
BssECI	CCNNGG	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	1394
Bst6I	CTCTTC	5 cut(s)	528, 1038, 1071, 1080, 1397
BstACI	GRCGYC	1 cut(s)	1394
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	5 cut(s)	105, 703, 726, 1223, 1349
BstF5I	GGATG	3 cut(s)	97, 345, 1165
BstFNI	CGCG	5 cut(s)	494, 506, 846, 860, 1399
BstHHI	GCGC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	530, 1277
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 605, 923
BstNSI	RCATGY	1 cut(s)	409
BstSNI	TACGTA	1 cut(s)	1379
BstUI	CGCG	5 cut(s)	494, 506, 846, 860, 1399
BstV1I	GCAGC	2 cut(s)	1182, 1349
BstX2I	RGATCY	2 cut(s)	691, 1258
BstYI	RGATCY	2 cut(s)	691, 1258
BsuRI	GGCC	1 cut(s)	917
BtgZI	GCGATG	2 cut(s)	747, 1355
BtsCI	GGATG	3 cut(s)	97, 345, 1165
BtuMI	TCGCGA	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	3 cut(s)	667, 709, 1324
Cfr13I	GGNCC	1 cut(s)	1253
CseI	GACGC	2 cut(s)	866, 1383
Csp6I	GTAC	6 cut(s)	83, 403, 417, 675, 700, 1376
CspAI	ACCGGT	1 cut(s)	1324
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	2 cut(s)	406, 1094
CviQI	GTAC	6 cut(s)	83, 403, 417, 675, 700, 1376
DdeI	CTNAG	5 cut(s)	105, 703, 726, 1223, 1349
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	5 cut(s)	528, 1038, 1071, 1080, 1397
EarI	CTCTTC	5 cut(s)	528, 1038, 1071, 1080, 1397
EciI	GGCGGA	5 cut(s)	19, 148, 654, 728, 1048
Eco105I	TACGTA	1 cut(s)	1379
Eco47I	GGWCC	1 cut(s)	1253
Eco57I	CTGAAG	1 cut(s)	482
Esp3I	CGTCTC	1 cut(s)	1277
FaeI	CATG	2 cut(s)	409, 1097
FaiI	YATR	9 cut(s)	54, 407, 660, 801, 923, 968, 1095, 1264, 1386
FatI	CATG	2 cut(s)	405, 1093
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	70, 297
Fnu4HI	GCNGC	7 cut(s)	234, 833, 847, 927, 1031, 1196, 1338
FokI	GGATG	3 cut(s)	84, 352, 1172
Fsp4HI	GCNGC	7 cut(s)	234, 833, 847, 927, 1031, 1196, 1338
FspBI	CTAG	2 cut(s)	600, 930
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	7 cut(s)	234, 833, 847, 927, 1031, 1196, 1338
HaeIII	GGCC	1 cut(s)	917
HapII	CCGG	8 cut(s)	86, 373, 668, 710, 1013, 1184, 1256, 1325
HgaI	GACGC	2 cut(s)	866, 1383
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	1394
Hin1II	CATG	2 cut(s)	409, 1097
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	4 cut(s)	71, 346, 367, 640
HindII	GTYRAC	4 cut(s)	71, 346, 367, 640
HindIII	AAGCTT	2 cut(s)	107, 224
HpaII	CCGG	8 cut(s)	86, 373, 668, 710, 1013, 1184, 1256, 1325
HphI	GGTGA	6 cut(s)	247, 323, 599, 1009, 1289, 1339
Hpy166II	GTNNAC	8 cut(s)	71, 199, 298, 346, 367, 517, 640, 1168
Hpy188I	TCNGA	9 cut(s)	176, 480, 501, 617, 632, 909, 1054, 1131, 1212
Hpy188III	TCNNGA	8 cut(s)	212, 241, 310, 425, 505, 962, 1184, 1230
Hpy8I	GTNNAC	8 cut(s)	71, 199, 298, 346, 367, 517, 640, 1168
HpyAV	CCTTC	2 cut(s)	1075, 1126
HpyCH4IV	ACGT	8 cut(s)	94, 285, 573, 636, 677, 958, 1143, 1378
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 605, 923
HpyF3I	CTNAG	5 cut(s)	105, 703, 726, 1223, 1349
HpySE526I	ACGT	8 cut(s)	94, 285, 573, 636, 677, 958, 1143, 1378
Hsp92I	GRCGYC	1 cut(s)	1394
Hsp92II	CATG	2 cut(s)	409, 1097
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	1183
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	1241
Lsp1109I	GCAGC	2 cut(s)	1182, 1349
MaeI	CTAG	2 cut(s)	600, 930
MaeII	ACGT	8 cut(s)	94, 285, 573, 636, 677, 958, 1143, 1378
MboII	GAAGA	7 cut(s)	515, 886, 964, 1055, 1088, 1097, 1135
MflI	RGATCY	2 cut(s)	691, 1258
MluCI	AATT	3 cut(s)	483, 796, 1213
MlyI	GAGTC	2 cut(s)	298, 532
MmeI	TCCRAC	5 cut(s)	317, 452, 741, 1190, 1231
MreI	CGCCGGCG	1 cut(s)	667
MroI	TCCGGA	1 cut(s)	1183
MroNI	GCCGGC	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	1089
MseI	TTAA	6 cut(s)	350, 464, 486, 561, 578, 879
MspI	CCGG	8 cut(s)	86, 373, 668, 710, 1013, 1184, 1256, 1325
MvnI	CGCG	5 cut(s)	494, 506, 846, 860, 1399
MwoI	GCNNNNNNNGC	3 cut(s)	518, 605, 923
NaeI	GCCGGC	1 cut(s)	669
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	2 cut(s)	409, 1097
NlaIV	GGNNCC	2 cut(s)	831, 1260
NmuCI	GTSAC	6 cut(s)	185, 329, 554, 587, 1144, 1327
NruI	TCGCGA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 135, 360, 1145, 1337
PdiI	GCCGGC	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	8 cut(s)	26, 61, 313, 455, 475, 904, 1090, 1126
PinAI	ACCGGT	1 cut(s)	1324
PkrI	GCNGC	7 cut(s)	235, 834, 848, 928, 1032, 1197, 1339
PleI	GAGTC	2 cut(s)	297, 532
PpsI	GAGTC	2 cut(s)	297, 532
Ppu21I	YACGTR	1 cut(s)	1379
PsiI	TTATAA	1 cut(s)	54
Psp1406I	AACGTT	2 cut(s)	573, 636
PspN4I	GGNNCC	2 cut(s)	831, 1260
PspPI	GGNCC	1 cut(s)	1253
PsuI	RGATCY	2 cut(s)	691, 1258
RruI	TCGCGA	1 cut(s)	506
RsaI	GTAC	6 cut(s)	84, 404, 418, 676, 701, 1377
RsaNI	GTAC	6 cut(s)	83, 403, 417, 675, 700, 1376
SalI	GTCGAC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	350, 464, 486, 561, 578, 879
SatI	GCNGC	7 cut(s)	234, 833, 847, 927, 1031, 1196, 1338
Sau96I	GGNCC	1 cut(s)	1253
SchI	GAGTC	2 cut(s)	298, 532
SgrAI	CRCCGGYG	2 cut(s)	667, 709
SgrDI	CGTCGACG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	1253
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SnaBI	TACGTA	1 cut(s)	1379
Sse9I	AATT	3 cut(s)	483, 796, 1213
SspMI	CTAG	2 cut(s)	600, 930
TaiI	ACGT	8 cut(s)	97, 288, 576, 639, 680, 961, 1146, 1381
TaqI	TCGA	8 cut(s)	70, 213, 309, 399, 944, 1139, 1229, 1358
TasI	AATT	3 cut(s)	483, 796, 1213
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	5 cut(s)	236, 835, 849, 929, 1033
TfiI	GAWTC	8 cut(s)	26, 61, 313, 455, 475, 904, 1090, 1126
Tru1I	TTAA	6 cut(s)	350, 464, 486, 561, 578, 879
Tru9I	TTAA	6 cut(s)	350, 464, 486, 561, 578, 879
TseFI	GTSAC	6 cut(s)	185, 329, 554, 587, 1144, 1327
TseI	GCWGC	2 cut(s)	1195, 1337
Tsp45I	GTSAC	6 cut(s)	185, 329, 554, 587, 1144, 1327
TspDTI	ATGAA	1 cut(s)	1082
TspGWI	ACGGA	3 cut(s)	234, 684, 795
VpaK11BI	GGWCC	1 cut(s)	1253
XapI	RAATTY	1 cut(s)	1213
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	2 cut(s)	70, 297
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	2 cut(s)	600, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.