Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013060

Physical Location & Seq

Genomic Coordinates Reverse (-)

7124952 .. 7126427

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGGTTACTTCTCTTGCAATGCCGAGTCCGCCGCGGCGATTTGCGACTCCTACAACTTTGACCTCAAGAGAAAACCCAATAATAAGCCCATCGAGATCAGGGAGTTCCCCTACGACGACCTCGTCGCCGCCACGAATGGGTTCTCAGCTGATAGCTTTTTGGGTAAAGGAAGCCACGGAAGCGTGTACAAGGCTATTCTCGACGACGGGAACCTCGTCGCCGCGGTTAAGAGGATGAAATACCCGAAGCAAACGACGTCGTTGGGGAGGCGTAGCTGCACCACTTGCGTCGCGGCGGAGAACGAGATCGAGATTCTTTCCCGGGTCCGACACCCCAGGCTCGTGAATCTCATCGGGTTCTGCCCGGACTCAAACGACGGGAAATTGATTGTCGTCGAGTACATGCCCAACGGCACGCTGCACGACTTGTTGCACTCGCGGGCCAGACCGCTCGGGTGGACCCGCCGAGTGCGGCTGAGCTTACACGTGGCCAAGGCGGTCCAGGCGCTGCACTCTTCCAACCCGCCGGTGATCCATAGGGATATAAAGTCGTCGAACGTTTTGATCGACGGGGATGGGAACGCGAGGCTCGGGGACTTGGGGCTGGCTTTGAGAGGACACGTGGAGGACGTTCGCTTGAGGTGTACGCCACCGGCGGGGACGTTAGGGTACCTCGACCCGGGCTATCTTGCGCCGGGGGATCTCAGCGCCAAGAGTGACGTCTTCAGCTTCGGGATTTTGCTCTTGGAAATCGTGAGCGGAAGAAACGCCATTGATGTGAACTACAGTCCTCCTTCGGTGATAGACTGGGCCCTACCGATCATAAAGCACGGCGAGTACGCCGCCATATGCGACCGGAGGATCGGCCCGCCGGCTGAGCCCGCCGTGATTCGCCAGCTCGCGGTGTTGGCCGCCAGGTGCGTGAGGTCGACGGCGGAGAAGCGACCGTCGATGGCGGAGGTGATCGAGTGTTTAAAAGTTGTGAATGAGAGAGTTCACGCGCCGATATGGAACAGCCTGAAGCGGCGCGTGAGGCGAGTGGAGGAGGAGGAGGAGCATCGACCGTCGTTTGTTGATGGGGGTGGTAATGATTTGGAGGAGGTGGTACGGAGCACGAGAGGGAGTAGGAGGAAGTTGAACAGGAAGGTATCGAGTGTGTTGGGTGCAGAGTACGAGGGTGAGGACGAGGCGATGATTGGAGAGCGGGTGCTGAGGTCAAGGTCGATTGGGTCGGTCAACGAGATTAAAGCGGGGAGTTGCGGTGGAGTGCGGAAGGGTGTAGGGGTTGCGGTGAAGGTGAGGCTGAGCAAGTCGAGGTCAGTTGGGGGACTATTGGGCAGTCCGAAGATTGTGCGTCGGAACAAAAGAGGGTTTTTGATTGAGTCGGTGAGATTGGACATGTCTAAATTGGTCATTAGTTTGGACGGTGAGAGATCTGATAGGAAAATGCTCGAGAAACCTCTGGTTTCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

491

Amino Acids

53.82

Weight (kDa)

9.46

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 322	6.5e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 325	6.3e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28390 AT1G28390
fragaria_vesca	FvH4_5g35880
malus_domestica	MD08G1192400.v1.1 MD15G1381000.v1.1
prunus_persica	Prupe.1G527200_v2.0.a1
pyrus_communis	pycom08g16610 pycom15g34150
rosa_chinensis	RchiOBHm_Chr7g0237591
rosa_laevigata	RLG00000000986
rosa_multiflora	Rmu_sc0007860.1_g000005
rosa_roxburghii	Rroxscaffold_3G00223960
rosa_rugosa	Rorug07G0305600
rosa_samantha	Rh7AG461900 Rh7BG432200 Rh7CG479000 Rh7DG448200
rosa_wichuraiana	Rw7G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	2 cut(s)	260, 723
Acc65I	GGTACC	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	669
AccBSI	CCGCTC	3 cut(s)	451, 759, 1204
AccI	GTMKAC	1 cut(s)	929
AccII	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	3 cut(s)	526, 708, 869
AcoI	YGGCCR	2 cut(s)	489, 909
AcuI	CTGAAG	2 cut(s)	709, 1040
AcvI	CACGTG	2 cut(s)	487, 622
AcyI	GRCGYC	2 cut(s)	257, 720
AfaI	GTAC	7 cut(s)	188, 401, 646, 671, 839, 1107, 1172
AfiI	CCNNNNNNNGG	4 cut(s)	138, 656, 679, 901
AflIII	ACRYGT	3 cut(s)	484, 619, 1398
AgsI	TTSAA	1 cut(s)	1138
AjnI	CCWGG	3 cut(s)	335, 501, 914
AluBI	AGCT	6 cut(s)	149, 156, 276, 480, 729, 898
AluI	AGCT	6 cut(s)	149, 156, 276, 480, 729, 898
Alw21I	GWGCWC	1 cut(s)	1115
AlwI	GGATC	3 cut(s)	526, 708, 869
AlwNI	CAGNNNCTG	1 cut(s)	508
Ama87I	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
AoxI	GGCC	5 cut(s)	441, 489, 810, 865, 909
ApaI	GGGCCC	1 cut(s)	814
ApeKI	GCWGC	3 cut(s)	276, 418, 508
Asp700I	GAANNNNTTC	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	669
AspLEI	GCGC	5 cut(s)	508, 694, 710, 1003, 1029
AspS9I	GGNCC	7 cut(s)	325, 441, 459, 499, 810, 811, 866
AsuC2I	CCSGG	6 cut(s)	322, 323, 365, 680, 681, 696
AsuHPI	GGTGA	8 cut(s)	541, 811, 973, 1190, 1303, 1309, 1399, 1439
AvaI	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
AvaII	GGWCC	3 cut(s)	325, 459, 499
BaeGI	GKGCMC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	2 cut(s)	814, 882
BauI	CACGAG	2 cut(s)	341, 1114
BbrPI	CACGTG	2 cut(s)	487, 622
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	1115
BbvCI	CCTCAGC	1 cut(s)	1211
BbvI	GCAGC	3 cut(s)	263, 405, 495
BccI	CCATC	4 cut(s)	98, 569, 946, 1070
BceAI	ACGGC	4 cut(s)	427, 847, 869, 948
BcgI	CGANNNNNNTGC	2 cut(s)	1333, 1367
BciT130I	CCWGG	3 cut(s)	337, 503, 916
BcnI	CCSGG	6 cut(s)	322, 323, 365, 680, 681, 696
BfmI	CTRYAG	1 cut(s)	784
BfoI	RGCGCY	2 cut(s)	509, 711
BglII	AGATCT	1 cut(s)	1433
BlpI	GCTNAGC	3 cut(s)	476, 876, 1304
Bme1390I	CCNGG	9 cut(s)	322, 323, 337, 365, 503, 680, 681, 696, 916
Bme18I	GGWCC	3 cut(s)	325, 459, 499
BmeT110I	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
BmgT120I	GGNCC	7 cut(s)	325, 441, 459, 499, 810, 811, 866
BmiI	GGNNCC	5 cut(s)	212, 326, 461, 671, 812
BmrFI	CCNGG	9 cut(s)	322, 323, 337, 365, 503, 680, 681, 696, 916
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	1 cut(s)	1066
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	1211
Bpu1102I	GCTNAGC	3 cut(s)	476, 876, 1304
BpuEI	CTTGAG	2 cut(s)	50, 658
BpuMI	CCSGG	6 cut(s)	322, 323, 365, 680, 681, 696
BsaAI	YACGTR	2 cut(s)	487, 622
BsaHI	GRCGYC	2 cut(s)	257, 720
BsaJI	CCNNGG	8 cut(s)	33, 175, 222, 321, 335, 492, 679, 695
BsaWI	WCCGGW	1 cut(s)	855
BsaXI	ACNNNNNCTCC	4 cut(s)	1191, 1221, 1246, 1276
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 656, 679, 901
Bse118I	RCCGGY	3 cut(s)	526, 652, 871
Bse1I	ACTGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	3 cut(s)	337, 503, 916
BseDI	CCNNGG	8 cut(s)	33, 175, 222, 321, 335, 492, 679, 695
BseGI	GGATG	2 cut(s)	240, 580
BseLI	CCNNNNNNNGG	4 cut(s)	138, 656, 679, 901
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	6 cut(s)	159, 467, 718, 867, 1202, 1295
BseNI	ACTGG	1 cut(s)	812
BseRI	GAGGAG	5 cut(s)	1058, 1061, 1064, 1067, 1112
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	3 cut(s)	263, 405, 495
BsgI	GTGCAG	4 cut(s)	262, 404, 494, 1185
Bsh1236I	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
Bsh1285I	CGRYCG	3 cut(s)	856, 947, 1064
BshFI	GGCC	5 cut(s)	443, 491, 812, 867, 911
BshNI	GGYRCC	1 cut(s)	669
BsiEI	CGRYCG	3 cut(s)	856, 947, 1064
BsiHKAI	GWGCWC	1 cut(s)	1115
BsiHKCI	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
BsiSI	CCGG	8 cut(s)	322, 365, 527, 653, 680, 695, 856, 872
BslFI	GGGAC	3 cut(s)	608, 673, 1341
BslI	CCNNNNNNNGG	4 cut(s)	138, 656, 679, 901
BsmFI	GGGAC	3 cut(s)	608, 673, 1341
BsnI	GGCC	5 cut(s)	443, 491, 812, 867, 911
BsoBI	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
Bsp120I	GGGCCC	1 cut(s)	810
Bsp1286I	GDGCHC	3 cut(s)	814, 882, 1115
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
Bsp1720I	GCTNAGC	3 cut(s)	476, 876, 1304
BspANI	GGCC	5 cut(s)	443, 491, 812, 867, 911
BspCNI	CTCAG	6 cut(s)	158, 468, 717, 868, 1203, 1296
BspFNI	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
BspLI	GGNNCC	5 cut(s)	212, 326, 461, 671, 812
BspPI	GGATC	3 cut(s)	526, 708, 869
BspT107I	GGYRCC	1 cut(s)	669
BsrBI	CCGCTC	3 cut(s)	451, 759, 1204
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	3 cut(s)	526, 652, 871
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	812
BssAI	RCCGGY	3 cut(s)	526, 652, 871
BssECI	CCNNGG	8 cut(s)	33, 175, 222, 321, 335, 492, 679, 695
BssMI	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
BssNI	GRCGYC	2 cut(s)	257, 720
BssSI	CACGAG	2 cut(s)	341, 1114
BssT1I	CCWWGG	1 cut(s)	492
Bst2BI	CACGAG	2 cut(s)	341, 1114
Bst2UI	CCWGG	3 cut(s)	337, 503, 916
Bst4CI	ACNGT	4 cut(s)	788, 948, 1065, 1427
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	2 cut(s)	257, 720
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	186
BstBAI	YACGTR	2 cut(s)	487, 622
BstC8I	GCNNGC	8 cut(s)	416, 441, 606, 869, 873, 882, 896, 900
BstDEI	CTNAG	6 cut(s)	145, 476, 704, 876, 1211, 1304
BstDSI	CCRYGG	3 cut(s)	33, 175, 222
BstF5I	GGATG	2 cut(s)	240, 580
BstFNI	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
BstH2I	RGCGCY	2 cut(s)	509, 711
BstHHI	GCGC	5 cut(s)	508, 694, 710, 1003, 1029
BstKTI	GATC	9 cut(s)	99, 309, 534, 567, 703, 822, 864, 966, 1436
BstMBI	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
BstMCI	CGRYCG	3 cut(s)	856, 947, 1064
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 180, 285, 503, 877, 881, 908, 1033
BstNI	CCWGG	3 cut(s)	337, 503, 916
BstNSI	RCATGY	2 cut(s)	406, 1402
BstSCI	CCNGG	9 cut(s)	320, 321, 335, 363, 501, 678, 679, 694, 914
BstSFI	CTRYAG	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
BstV1I	GCAGC	3 cut(s)	263, 405, 495
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	2 cut(s)	700, 1433
BstYI	RGATCY	2 cut(s)	700, 1433
BsuRI	GGCC	5 cut(s)	443, 491, 812, 867, 911
BtgI	CCRYGG	3 cut(s)	33, 175, 222
BtgZI	GCGATG	1 cut(s)	1205
BtsCI	GGATG	2 cut(s)	240, 580
Cac8I	GCNNGC	8 cut(s)	416, 441, 606, 869, 873, 882, 896, 900
CaiI	CAGNNNCTG	1 cut(s)	508
CfoI	GCGC	5 cut(s)	508, 694, 710, 1003, 1029
Cfr10I	RCCGGY	3 cut(s)	526, 652, 871
Cfr13I	GGNCC	7 cut(s)	325, 441, 459, 499, 810, 811, 866
Cfr42I	CCGCGG	2 cut(s)	36, 225
Cfr9I	CCCGGG	2 cut(s)	321, 679
CseI	GACGC	2 cut(s)	277, 1343
Csp6I	GTAC	7 cut(s)	187, 400, 645, 670, 838, 1106, 1171
CviAII	CATG	2 cut(s)	403, 1399
CviQI	GTAC	7 cut(s)	187, 400, 645, 670, 838, 1106, 1171
DdeI	CTNAG	6 cut(s)	145, 476, 704, 876, 1211, 1304
DpnI	GATC	9 cut(s)	98, 308, 533, 566, 702, 821, 863, 965, 1435
DpnII	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
DraI	TTTAAA	1 cut(s)	975
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	489, 909
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
EciI	GGCGGA	4 cut(s)	19, 311, 950, 971
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	2 cut(s)	814, 882
Eco47I	GGWCC	3 cut(s)	325, 459, 499
Eco57I	CTGAAG	2 cut(s)	709, 1040
Eco72I	CACGTG	2 cut(s)	487, 622
Eco88I	CYCGRG	5 cut(s)	321, 452, 590, 679, 1451
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	335, 501, 914
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	2 cut(s)	814, 882
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	406, 1402
FaiI	YATR	8 cut(s)	404, 537, 545, 824, 848, 850, 1009, 1400
FaqI	GGGAC	3 cut(s)	608, 673, 1341
FatI	CATG	2 cut(s)	402, 1398
FauI	CCCGC	8 cut(s)	432, 470, 531, 649, 876, 889, 1197, 1243
FauNDI	CATATG	1 cut(s)	848
FblI	GTMKAC	1 cut(s)	929
FokI	GGATG	2 cut(s)	247, 587
FriOI	GRGCYC	2 cut(s)	814, 882
GlaI	GCGC	5 cut(s)	507, 693, 709, 1002, 1028
HaeII	RGCGCY	2 cut(s)	509, 711
HaeIII	GGCC	5 cut(s)	443, 491, 812, 867, 911
HapII	CCGG	8 cut(s)	322, 365, 527, 653, 680, 695, 856, 872
HgaI	GACGC	2 cut(s)	277, 1343
HhaI	GCGC	5 cut(s)	508, 694, 710, 1003, 1029
Hin1I	GRCGYC	2 cut(s)	257, 720
Hin1II	CATG	2 cut(s)	406, 1402
Hin6I	GCGC	5 cut(s)	506, 692, 708, 1001, 1027
HinP1I	GCGC	5 cut(s)	506, 692, 708, 1001, 1027
HincII	GTYRAC	2 cut(s)	930, 1237
HindII	GTYRAC	2 cut(s)	930, 1237
HinfI	GANTC	7 cut(s)	26, 47, 313, 346, 368, 889, 1382
HpaII	CCGG	8 cut(s)	322, 365, 527, 653, 680, 695, 856, 872
HphI	GGTGA	8 cut(s)	541, 811, 973, 1190, 1303, 1309, 1399, 1439
Hpy166II	GTNNAC	7 cut(s)	187, 459, 645, 781, 930, 997, 1237
Hpy188I	TCNGA	4 cut(s)	329, 1344, 1359, 1438
Hpy188III	TCNNGA	8 cut(s)	67, 94, 200, 310, 343, 733, 754, 1453
Hpy8I	GTNNAC	7 cut(s)	187, 459, 645, 781, 930, 997, 1237
HpyAV	CCTTC	4 cut(s)	804, 1138, 1267, 1288
HpyCH4III	ACNGT	4 cut(s)	788, 948, 1065, 1427
HpyCH4IV	ACGT	7 cut(s)	257, 486, 558, 621, 630, 662, 720
HpyCH4V	TGCA	6 cut(s)	18, 279, 421, 433, 511, 1166
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 180, 285, 503, 877, 881, 908, 1033
HpyF3I	CTNAG	6 cut(s)	145, 476, 704, 876, 1211, 1304
HpySE526I	ACGT	7 cut(s)	257, 486, 558, 621, 630, 662, 720
Hsp92I	GRCGYC	2 cut(s)	257, 720
Hsp92II	CATG	2 cut(s)	406, 1402
HspAI	GCGC	5 cut(s)	506, 692, 708, 1001, 1027
KpnI	GGTACC	1 cut(s)	673
KroI	GCCGGC	1 cut(s)	871
KroNI	GCCGGC	1 cut(s)	873
KspI	CCGCGG	2 cut(s)	36, 225
Kzo9I	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
LmnI	GCTCC	2 cut(s)	1054, 1110
Lsp1109I	GCAGC	3 cut(s)	263, 405, 495
LweI	GCATC	1 cut(s)	1066
MaeII	ACGT	7 cut(s)	257, 486, 558, 621, 630, 662, 720
MaeIII	GTNAC	2 cut(s)	5, 716
MalI	GATC	9 cut(s)	98, 308, 533, 566, 702, 821, 863, 965, 1435
MbiI	CCGCTC	3 cut(s)	451, 759, 1204
MboI	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
MboII	GAAGA	4 cut(s)	507, 715, 774, 1357
MflI	RGATCY	2 cut(s)	700, 1433
MhlI	GDGCHC	3 cut(s)	814, 882, 1115
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	2 cut(s)	383, 1406
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	4 cut(s)	35, 41, 362, 1391
MmeI	TCCRAC	3 cut(s)	352, 543, 1337
Mox20I	TGGCCA	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	3 cut(s)	228, 974, 1245
MslI	CAYNNNNRTG	1 cut(s)	776
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	3 cut(s)	35, 149, 224
MspI	CCGG	8 cut(s)	322, 365, 527, 653, 680, 695, 856, 872
MspR9I	CCNGG	9 cut(s)	322, 323, 337, 365, 503, 680, 681, 696, 916
MvaI	CCWGG	3 cut(s)	337, 503, 916
MvnI	CGCG	8 cut(s)	35, 224, 293, 439, 584, 902, 1001, 1029
MwoI	GCNNNNNNNGC	8 cut(s)	29, 180, 285, 503, 877, 881, 908, 1033
NaeI	GCCGGC	1 cut(s)	873
NciI	CCSGG	6 cut(s)	322, 323, 365, 680, 681, 696
NdeI	CATATG	1 cut(s)	848
NdeII	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
NgoMIV	GCCGGC	1 cut(s)	871
NlaIII	CATG	2 cut(s)	406, 1402
NlaIV	GGNNCC	5 cut(s)	212, 326, 461, 671, 812
NmeAIII	GCCGAG	2 cut(s)	49, 491
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	2 cut(s)	406, 1402
PaeR7I	CTCGAG	1 cut(s)	1451
PciI	ACATGT	1 cut(s)	1398
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 213, 564, 627
PdiI	GCCGGC	1 cut(s)	873
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	313, 346, 889
PflFI	GACNNNGTC	1 cut(s)	122
PleI	GAGTC	4 cut(s)	34, 41, 362, 1390
PmaCI	CACGTG	2 cut(s)	487, 622
PmlI	CACGTG	2 cut(s)	487, 622
PpsI	GAGTC	4 cut(s)	34, 41, 362, 1390
Ppu21I	YACGTR	2 cut(s)	487, 622
PscI	ACATGT	1 cut(s)	1398
Psp1406I	AACGTT	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	335, 501, 914
PspCI	CACGTG	2 cut(s)	487, 622
PspGI	CCWGG	3 cut(s)	335, 501, 914
PspN4I	GGNNCC	5 cut(s)	212, 326, 461, 671, 812
PspOMI	GGGCCC	1 cut(s)	810
PspPI	GGNCC	7 cut(s)	325, 441, 459, 499, 810, 811, 866
PstNI	CAGNNNCTG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	700, 1433
PsyI	GACNNNGTC	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	7 cut(s)	188, 401, 646, 671, 839, 1107, 1172
RsaNI	GTAC	7 cut(s)	187, 400, 645, 670, 838, 1106, 1171
RseI	CAYNNNNRTG	1 cut(s)	776
SacII	CCGCGG	2 cut(s)	36, 225
SalI	GTCGAC	1 cut(s)	928
SaqAI	TTAA	3 cut(s)	228, 974, 1245
Sau3AI	GATC	9 cut(s)	96, 306, 531, 564, 700, 819, 861, 963, 1433
Sau96I	GGNCC	7 cut(s)	325, 441, 459, 499, 810, 811, 866
SchI	GAGTC	4 cut(s)	35, 41, 362, 1391
ScrFI	CCNGG	9 cut(s)	322, 323, 337, 365, 503, 680, 681, 696, 916
SduI	GDGCHC	3 cut(s)	814, 882, 1115
SfaNI	GCATC	1 cut(s)	1066
SfcI	CTRYAG	1 cut(s)	784
Sfr274I	CTCGAG	1 cut(s)	1451
Sfr303I	CCGCGG	2 cut(s)	36, 225
SgrAI	CRCCGGYG	2 cut(s)	526, 652
SgrBI	CCGCGG	2 cut(s)	36, 225
SinI	GGWCC	3 cut(s)	325, 459, 499
SlaI	CTCGAG	1 cut(s)	1451
SmaI	CCCGGG	2 cut(s)	323, 681
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	3 cut(s)	65, 637, 1451
SmoI	CTYRAG	3 cut(s)	65, 637, 1451
Sse9I	AATT	2 cut(s)	383, 1406
StyD4I	CCNGG	9 cut(s)	320, 321, 335, 363, 501, 678, 679, 694, 914
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	4 cut(s)	788, 948, 1065, 1427
TaiI	ACGT	7 cut(s)	260, 489, 561, 624, 633, 665, 723
TaqII	GACCGA	1 cut(s)	1222
TasI	AATT	2 cut(s)	383, 1406
TatI	WGTACW	2 cut(s)	186, 399
TauI	GCSGC	9 cut(s)	35, 38, 131, 224, 296, 475, 845, 914, 1027
TfiI	GAWTC	3 cut(s)	313, 346, 889
Tru1I	TTAA	3 cut(s)	228, 974, 1245
Tru9I	TTAA	3 cut(s)	228, 974, 1245
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	276, 418, 508
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	2 cut(s)	192, 1123
TspMI	CCCGGG	2 cut(s)	321, 679
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	325, 459, 499
XceI	RCATGY	2 cut(s)	406, 1402
XhoI	CTCGAG	1 cut(s)	1451
XmaI	CCCGGG	2 cut(s)	321, 679
XmiI	GTMKAC	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	140
ZraI	GACGTC	2 cut(s)	258, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.