Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013060

Physical Location & Seq

Genomic Coordinates Forward (+)

30605860 .. 30606264

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0305600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAATAAGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCGGACTCCGTCTCCGTTTAATCGGAGCAATTCGTCGATTTGCTTCCGACCGCGCAGAGCTGCTGCCCCTGCCCTAAAATCCCAACCCGGATTTCTCGATGACGTGGCCGTCAATCTCAGTACGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCGAAAAATTCGCAGAAGAATTGCAACGCCAGAAGATCCGTACTCTAATGTCCATGCGGTTACTAACCCAACAACGATCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.5

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28390 AT1G28390
fragaria_vesca	FvH4_5g35880
malus_domestica	MD08G1192400.v1.1 MD15G1381000.v1.1
prunus_persica	Prupe.1G527200_v2.0.a1
pyrus_communis	pycom08g16610 pycom15g34150
rosa_chinensis	RchiOBHm_Chr7g0237591
rosa_laevigata	RLG00000000986
rosa_multiflora	Rmu_sc0007860.1_g000005
rosa_roxburghii	Rroxscaffold_3G00223960
rosa_rugosa	Rorug07G0305600
rosa_samantha	Rh7AG461900 Rh7BG432200 Rh7CG479000 Rh7DG448200
rosa_wichuraiana	Rw7G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccII	CGCG	2 cut(s)	100, 231
AciI	CCGC	2 cut(s)	98, 286
AclWI	GGATC	2 cut(s)	259, 300
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	3 cut(s)	169, 180, 271
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	30, 63
AlwI	GGATC	2 cut(s)	259, 300
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	153, 213
ApeKI	GCWGC	2 cut(s)	107, 110
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	94, 97
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	30, 63
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse21I	CCTNAGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	178, 232
BseXI	GCAGC	2 cut(s)	94, 97
Bsh1236I	CGCG	2 cut(s)	100, 231
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	155, 215
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	30, 63
BsmBI	CGTCTC	2 cut(s)	30, 63
BsnI	GGCC	2 cut(s)	155, 215
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	264, 305
BspACI	CCGC	2 cut(s)	98, 286
BspANI	GGCC	2 cut(s)	155, 215
BspCNI	CTCAG	2 cut(s)	177, 231
BspFNI	CGCG	2 cut(s)	100, 231
BspPI	GGATC	2 cut(s)	259, 300
BssMI	GATC	2 cut(s)	264, 305
Bst4CI	ACNGT	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	164, 218
BstFNI	CGCG	2 cut(s)	100, 231
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	267, 308
BstMAI	GTCTC	2 cut(s)	30, 63
BstMBI	GATC	2 cut(s)	264, 305
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	100, 231
BstV1I	GCAGC	2 cut(s)	94, 97
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	155, 215
BtrI	CACGTC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	168, 179, 270
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	3 cut(s)	107, 155, 215
CviKI_1	RGCY	3 cut(s)	107, 155, 215
CviQI	GTAC	3 cut(s)	168, 179, 270
DdeI	CTNAG	2 cut(s)	164, 218
DpnI	GATC	2 cut(s)	266, 307
DpnII	GATC	2 cut(s)	264, 305
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	214
Esp3I	CGTCTC	2 cut(s)	30, 63
FaeI	CATG	1 cut(s)	286
FaiI	YATR	1 cut(s)	284
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	108, 111
Fsp4HI	GCNGC	2 cut(s)	108, 111
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	108, 111
HaeIII	GGCC	2 cut(s)	155, 215
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	41, 52, 194
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	5 cut(s)	40, 51, 72, 95, 199
Hpy188III	TCNNGA	3 cut(s)	143, 209, 220
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	164, 218
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	264, 305
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	4 cut(s)	129, 148, 205, 272
Lsp1109I	GCAGC	2 cut(s)	94, 97
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	2 cut(s)	266, 307
MboI	GATC	2 cut(s)	264, 305
MboII	GAAGA	2 cut(s)	257, 274
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	4 cut(s)	76, 236, 248, 310
MlyI	GAGTC	2 cut(s)	46, 50
MmeI	TCCRAC	2 cut(s)	18, 118
MnlI	CCTC	2 cut(s)	205, 227
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	100, 231
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	264, 305
NlaIII	CATG	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	109, 112
PleI	GAGTC	2 cut(s)	46, 49
PpsI	GAGTC	2 cut(s)	46, 49
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	55
RsaI	GTAC	3 cut(s)	169, 180, 271
RsaNI	GTAC	3 cut(s)	168, 179, 270
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	2 cut(s)	264, 305
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	46, 50
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	3 cut(s)	12, 109, 153
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	76, 236, 248, 310
SsiI	CCGC	2 cut(s)	98, 286
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	83, 144, 210
TasI	AATT	4 cut(s)	76, 236, 248, 310
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	107, 110
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	45, 51, 257
Tth111I	GACNNNGTC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.