AT1G29800

Las17-binding protein actin regulator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10432599 .. 10435441
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29800.2

Sequence Viewer

Length: 1533 bp
ATGGATGAAAGAGATCGAGAAATTCGTGCTTCTCATGGTGATTCTAATGCTGGTAATGTCGTTAGTCAAAGCATAGAGAATACTAGAGAAGAAGATTCTGGTTCATGTGAAGGCTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCATGGTAAATATTTTTTCTATGACACACCGCTTTCTGAGGAAACCGGGGTTTGGATACCTGTTTCAGTCCCACCCATGTTAGAACCTGATCATGAGGAATGGTCAAGAGGTCTTAGTTTCAATGGTGGTTACTTCCCTGAAGGAGATATGGGATGGGACCAGATATTTGATGAAGATAAGGAGTTAACTATGTGGGATGTGATAGTTGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTCTTAGTTCTGGCAACCTTGAGAGATGTGGCATTAATTTTTTGTCGGGACATCTTCTTGAACAAGCTTGGCAAGATATGGCTCATACTCTTACTGAGGCTAACTTTGGTAATGCAAGAGAGATTCTGGAGACTGAGCCACCCAAGTGGCTACCGGATAGCGCTGCTTCTGCTTGTATGCTATGTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCACTGTCGATATTGTGGAGGAATATTCTGTAGGGATTGTTCTAAAGGAAAAAGCTTGGTTCCTGTAAAGTTTCGTGTTTCAGATCCCCAGAGGGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGATGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACGTTGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATCTATAAGGCGACAAACACTCTTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCCCAGATGCCATTTTAAGACAAGCAAAAGGTCTTGCAGTAATCACTGTTGCCAGAGTTGGAGTTATGGTTACATATAAAATCGGGACTGGACTTGTGGTTGCTCGTAGAGATGATGGCTCCTGGTCTCCACCCTCTGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAGAGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACGTTTGGGAGTAACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAGTTGAAGCGGATATCCGAGCAGGTAGTGGTGGATATGCTGCTTGCTACACCTACAGCTGCAGCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATTTTCACAACACGTACAAGTGAGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTTTGCCAAGGCCACCTGCCGCTGCTGCACTCTACCGTGCGCTTGGCGATCTGTATCAGAAGATGGGGAGTGAAACTGTTCGGTCTCCGGCAATTTCTCCATTGTCTGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

55.76

Weight (kDa)

5.25

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 181 - 247 7.1e-18 FYVE zinc finger
Ysc84 PF04366 364 - 488 4.3e-38 Las17-binding protein actin regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1441
Acc36I ACCTGC 2 cut(s) 1250, 1441
AccII CGCG 1 cut(s) 382
AciI CCGC 3 cut(s) 185, 1247, 1437
AclI AACGTT 1 cut(s) 1169
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 2 cut(s) 21, 835
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 817, 1354
AfeI AGCGCT 2 cut(s) 559, 1213
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 1349
AgsI TTSAA 5 cut(s) 122, 277, 458, 1244, 1331
AjnI CCWGG 1 cut(s) 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AleI CACNNNNGTG 1 cut(s) 541
AluBI AGCT 5 cut(s) 464, 672, 1202, 1296, 1394
AluI AGCT 5 cut(s) 464, 672, 1202, 1296, 1394
Alw21I GWGCWC 2 cut(s) 400, 1108
Alw26I GTCTC 3 cut(s) 521, 1068, 1506
AlwI GGATC 1 cut(s) 695
Aor51HI AGCGCT 2 cut(s) 559, 1213
AoxI GGCC 1 cut(s) 1427
ApoI RAATTY 2 cut(s) 21, 835
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 1494
AspLEI GCGC 4 cut(s) 382, 560, 1214, 1459
AspS9I GGNCC 3 cut(s) 313, 763, 933
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 50, 844
AvaII GGWCC 3 cut(s) 313, 763, 933
BauI CACGAG 1 cut(s) 1152
Bbv12I GWGCWC 2 cut(s) 400, 1108
BccI CCATC 9 cut(s) 303, 754, 944, 1046, 1085, 1092, 1169, 1194, 1474
BciT130I CCWGG 1 cut(s) 1060
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 521, 1068, 1506
BfaI CTAG 2 cut(s) 84, 1391
BfmI CTRYAG 4 cut(s) 646, 1215, 1291, 1297
BfoI RGCGCY 2 cut(s) 561, 1215
BfuAI ACCTGC 2 cut(s) 1250, 1441
BfuI GTATCC 1 cut(s) 204
BglII AGATCT 2 cut(s) 808, 867
Bme1390I CCNGG 2 cut(s) 202, 1060
Bme18I GGWCC 3 cut(s) 313, 763, 933
BmgT120I GGNCC 3 cut(s) 313, 763, 933
BmiI GGNNCC 5 cut(s) 141, 314, 678, 1057, 1382
BmrFI CCNGG 2 cut(s) 202, 1060
BmsI GCATC 2 cut(s) 934, 1310
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 1352
BsaBI GATNNNNATC 1 cut(s) 1470
BsaI GGTCTC 2 cut(s) 1068, 1506
BsaJI CCNNGG 6 cut(s) 201, 842, 855, 906, 1411, 1424
BsaWI WCCGGW 2 cut(s) 142, 550
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 4 cut(s) 141, 1030, 1234, 1384
Bse8I GATNNNNATC 1 cut(s) 1470
BseBI CCWGG 1 cut(s) 1060
BseDI CCNNGG 6 cut(s) 201, 842, 855, 906, 1411, 1424
BseGI GGATG 9 cut(s) 10, 314, 358, 595, 936, 1103, 1161, 1325, 1404
BseJI GATNNNNATC 1 cut(s) 1470
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 7 cut(s) 183, 483, 522, 797, 918, 1121, 1136
BseNI ACTGG 4 cut(s) 141, 1030, 1234, 1384
BseRI GAGGAG 1 cut(s) 1131
BsgI GTGCAG 2 cut(s) 767, 1428
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 1429
BsiHKAI GWGCWC 2 cut(s) 400, 1108
BsiSI CCGG 4 cut(s) 143, 201, 551, 1505
BslFI GGGAC 6 cut(s) 209, 326, 459, 861, 1036, 1372
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 3 cut(s) 521, 1068, 1506
BsmFI GGGAC 6 cut(s) 209, 326, 459, 861, 1036, 1372
BsnI GGCC 1 cut(s) 1429
Bso31I GGTCTC 2 cut(s) 1068, 1506
Bsp1286I GDGCHC 2 cut(s) 400, 1108
Bsp143I GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
Bsp19I CCATGG 2 cut(s) 842, 855
BspACI CCGC 3 cut(s) 185, 1247, 1437
BspANI GGCC 1 cut(s) 1429
BspCNI CTCAG 7 cut(s) 184, 484, 523, 796, 919, 1120, 1137
BspFNI CGCG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 5 cut(s) 141, 314, 678, 1057, 1382
BspMAI CTGCAG 2 cut(s) 1219, 1301
BspMI ACCTGC 2 cut(s) 1250, 1441
BspPI GGATC 1 cut(s) 695
BspTNI GGTCTC 2 cut(s) 1068, 1506
BsrI ACTGG 4 cut(s) 141, 1030, 1234, 1384
BssECI CCNNGG 6 cut(s) 201, 842, 855, 906, 1411, 1424
BssMI GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
BssSI CACGAG 1 cut(s) 1152
BssT1I CCWWGG 5 cut(s) 842, 855, 906, 1411, 1424
Bst2BI CACGAG 1 cut(s) 1152
Bst2UI CCWGG 1 cut(s) 1060
Bst4CI ACNGT 5 cut(s) 623, 985, 1371, 1454, 1495
Bst6I CTCTTC 3 cut(s) 117, 894, 1087
BstBAI YACGTR 1 cut(s) 1352
BstC8I GCNNGC 2 cut(s) 1282, 1325
BstDSI CCRYGG 2 cut(s) 842, 855
BstF5I GGATG 9 cut(s) 10, 314, 358, 595, 936, 1103, 1161, 1325, 1404
BstFNI CGCG 1 cut(s) 382
BstH2I RGCGCY 2 cut(s) 561, 1215
BstHHI GCGC 4 cut(s) 382, 560, 1214, 1459
BstKTI GATC 6 cut(s) 16, 247, 703, 811, 870, 1468
BstMAI GTCTC 3 cut(s) 521, 1068, 1506
BstMBI GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
BstMWI GCNNNNNNNGC 3 cut(s) 566, 1244, 1442
BstNI CCWGG 1 cut(s) 1060
BstSCI CCNGG 2 cut(s) 200, 1058
BstSFI CTRYAG 4 cut(s) 646, 1215, 1291, 1297
BstUI CGCG 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 700, 808, 867
BstXI CCANNNNNNTGG 2 cut(s) 543, 1172
BstYI RGATCY 3 cut(s) 700, 808, 867
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 1429
BtgI CCRYGG 2 cut(s) 842, 855
BtsCI GGATG 9 cut(s) 10, 314, 358, 595, 936, 1103, 1161, 1325, 1404
BtsIMutI CAGTG 2 cut(s) 619, 981
BveI ACCTGC 2 cut(s) 1250, 1441
Cac8I GCNNGC 2 cut(s) 1282, 1325
CciI TCATGA 1 cut(s) 247
CfoI GCGC 4 cut(s) 382, 560, 1214, 1459
Cfr13I GGNCC 3 cut(s) 313, 763, 933
CseI GACGC 1 cut(s) 1386
Csp6I GTAC 2 cut(s) 816, 1353
CviAII CATG 8 cut(s) 35, 105, 158, 232, 248, 797, 843, 856
CviQI GTAC 2 cut(s) 816, 1353
DpnI GATC 6 cut(s) 15, 246, 702, 810, 869, 1467
DpnII GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
Eam1104I CTCTTC 3 cut(s) 117, 894, 1087
EarI CTCTTC 3 cut(s) 117, 894, 1087
Eco130I CCWWGG 5 cut(s) 842, 855, 906, 1411, 1424
Eco31I GGTCTC 2 cut(s) 1068, 1506
Eco32I GATATC 1 cut(s) 1252
Eco47I GGWCC 3 cut(s) 313, 763, 933
Eco47III AGCGCT 2 cut(s) 559, 1213
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 1058
EcoRV GATATC 1 cut(s) 1252
EcoT14I CCWWGG 5 cut(s) 842, 855, 906, 1411, 1424
ErhI CCWWGG 5 cut(s) 842, 855, 906, 1411, 1424
FaeI CATG 8 cut(s) 38, 108, 161, 235, 251, 800, 846, 859
FaqI GGGAC 6 cut(s) 209, 326, 459, 861, 1036, 1372
FatI CATG 8 cut(s) 34, 104, 157, 231, 247, 796, 842, 855
FbaI TGATCA 1 cut(s) 244
FokI GGATG 9 cut(s) 17, 321, 365, 582, 923, 1110, 1148, 1332, 1391
FspBI CTAG 2 cut(s) 84, 1391
GlaI GCGC 4 cut(s) 381, 559, 1213, 1458
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 2 cut(s) 561, 1215
HaeIII GGCC 1 cut(s) 1429
HapII CCGG 4 cut(s) 143, 201, 551, 1505
HgaI GACGC 1 cut(s) 1386
HhaI GCGC 4 cut(s) 382, 560, 1214, 1459
Hin1II CATG 8 cut(s) 38, 108, 161, 235, 251, 800, 846, 859
Hin6I GCGC 4 cut(s) 380, 558, 1212, 1457
HinP1I GCGC 4 cut(s) 380, 558, 1212, 1457
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 2 cut(s) 462, 670
HinfI GANTC 5 cut(s) 41, 95, 520, 740, 772
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 4 cut(s) 143, 201, 551, 1505
HphI GGTGA 2 cut(s) 50, 844
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 8 cut(s) 193, 700, 1146, 1256, 1319, 1402, 1476, 1525
Hpy188III TCNNGA 9 cut(s) 17, 248, 261, 444, 455, 524, 921, 1021, 1154
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 104, 290, 1325
HpyCH4III ACNGT 5 cut(s) 623, 985, 1371, 1454, 1495
HpyCH4IV ACGT 3 cut(s) 818, 1169, 1351
HpyCH4V TGCA 8 cut(s) 377, 512, 748, 974, 1217, 1299, 1310, 1445
HpyF10VI GCNNNNNNNGC 3 cut(s) 566, 1244, 1442
HpySE526I ACGT 3 cut(s) 818, 1169, 1351
Hsp92II CATG 8 cut(s) 38, 108, 161, 235, 251, 800, 846, 859
HspAI GCGC 4 cut(s) 380, 558, 1212, 1457
Ksp22I TGATCA 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
LmnI GCTCC 3 cut(s) 1061, 1199, 1380
LweI GCATC 2 cut(s) 934, 1310
MaeI CTAG 2 cut(s) 84, 1391
MaeII ACGT 3 cut(s) 818, 1169, 1351
MaeIII GTNAC 5 cut(s) 284, 369, 1006, 1178, 1225
MalI GATC 6 cut(s) 15, 246, 702, 810, 869, 1467
MboI GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
MboII GAAGA 9 cut(s) 101, 104, 134, 341, 443, 881, 909, 1074, 1489
MflI RGATCY 3 cut(s) 700, 808, 867
MhlI GDGCHC 2 cut(s) 400, 1108
MluCI AATT 5 cut(s) 21, 433, 600, 835, 1509
MlyI GAGTC 2 cut(s) 749, 781
MmeI TCCRAC 4 cut(s) 717, 976, 1177, 1297
MroXI GAANNNNTTC 1 cut(s) 1494
MseI TTAA 4 cut(s) 341, 432, 953, 1208
MslI CAYNNNNRTG 1 cut(s) 541
MspA1I CMGCKG 2 cut(s) 1296, 1439
MspI CCGG 4 cut(s) 143, 201, 551, 1505
MspR9I CCNGG 2 cut(s) 202, 1060
MvaI CCWGG 1 cut(s) 1060
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 3 cut(s) 566, 1244, 1442
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 2 cut(s) 842, 855
NdeII GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
NlaIII CATG 8 cut(s) 38, 108, 161, 235, 251, 800, 846, 859
NlaIV GGNNCC 5 cut(s) 141, 314, 678, 1057, 1382
NmuCI GTSAC 1 cut(s) 1225
OliI CACNNNNGTG 1 cut(s) 541
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 1441
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 1494
PfeI GAWTC 3 cut(s) 41, 95, 520
PleI GAGTC 2 cut(s) 748, 780
PpsI GAGTC 2 cut(s) 748, 780
Ppu21I YACGTR 1 cut(s) 1352
PshBI ATTAAT 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 1169
Psp6I CCWGG 1 cut(s) 1058
PspGI CCWGG 1 cut(s) 1058
PspN4I GGNNCC 5 cut(s) 141, 314, 678, 1057, 1382
PspPI GGNCC 3 cut(s) 313, 763, 933
PsrI GAACNNNNNNTAC 2 cut(s) 640, 672
PstI CTGCAG 2 cut(s) 1219, 1301
PsuI RGATCY 3 cut(s) 700, 808, 867
PvuII CAGCTG 1 cut(s) 1296
RsaI GTAC 2 cut(s) 817, 1354
RsaNI GTAC 2 cut(s) 816, 1353
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 4 cut(s) 341, 432, 953, 1208
Sau3AI GATC 6 cut(s) 13, 244, 700, 808, 867, 1465
Sau96I GGNCC 3 cut(s) 313, 763, 933
SchI GAGTC 2 cut(s) 749, 781
ScrFI CCNGG 2 cut(s) 202, 1060
SduI GDGCHC 2 cut(s) 400, 1108
SfaNI GCATC 2 cut(s) 934, 1310
SfcI CTRYAG 4 cut(s) 646, 1215, 1291, 1297
SinI GGWCC 3 cut(s) 313, 763, 933
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 21, 433, 600, 835, 1509
SsiI CCGC 3 cut(s) 185, 1247, 1437
SspI AATATT 2 cut(s) 167, 642
SspMI CTAG 2 cut(s) 84, 1391
StyD4I CCNGG 2 cut(s) 200, 1058
StyI CCWWGG 5 cut(s) 842, 855, 906, 1411, 1424
TaaI ACNGT 5 cut(s) 623, 985, 1371, 1454, 1495
TaiI ACGT 3 cut(s) 821, 1172, 1354
TaqI TCGA 3 cut(s) 16, 625, 920
TaqII GACCGA 1 cut(s) 1488
TasI AATT 5 cut(s) 21, 433, 600, 835, 1509
TauI GCSGC 1 cut(s) 1439
TfiI GAWTC 3 cut(s) 41, 95, 520
Tru1I TTAA 4 cut(s) 341, 432, 953, 1208
Tru9I TTAA 4 cut(s) 341, 432, 953, 1208
TscAI CASTG 2 cut(s) 626, 988
TseFI GTSAC 1 cut(s) 1225
Tsp45I GTSAC 1 cut(s) 1225
TspDTI ATGAA 6 cut(s) 21, 93, 342, 584, 1074, 1114
TspRI CASTG 2 cut(s) 626, 988
VpaK11BI GGWCC 3 cut(s) 313, 763, 933
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 21, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 1193
XmnI GAANNNNTTC 1 cut(s) 1494
XspI CTAG 2 cut(s) 84, 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.