Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028144.1

Orthogroup ID

OG0009365

Physical Location & Seq

Genomic Coordinates Forward (+)

1018 .. 2898

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028144.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atggacggcgatcatcacaaccccaattctgaactcgaagccgacgctttgtcttctagggtttccgatttctcgctgcacgaagacatccccaattcgaaagttcaatacccgccgattgatagaggagataaaaatcgtacagagaataagtatagtgatgaaccgaaaatgacagaatctagagaagatgactgtgaggtacgtgggaaggataaccaggcatcagaagcctgccgttcggagcgaaagaagtacttttattatgatgctccacattttgaggatacgggggtttggatacctgtttccgttccccctatgttgcaaacagagcatgaagagtgggcgaaaggtttttccgcaaatgggggtttctttcccgagaatgacatgggttggggcaagtttattggggatgagaaggagatgactatgtgggatgtgatggtcgagatgttgcttgcggcccgtgggaaagtaagttcattggcttcccctgatatatatggatgtagactttcatggatgtccgacaatctacttgagcaagcatggcaggaaatggcccaaacactcacagatgctaacctggctcatgtacatgaaattctggaagcagatccaccaaagtggctggccgatagttctgcgtcttcttgtatgctctgtggcgtgcagtttcatccaatcatgtgctctaggcatcactgtcggttttgtggaggaatattttgtggtgactgttccaagggaaggagtctgttgcccaaaaagttccgtgttgcagatcctcagcgagtctgtgatgtatgctgtgtaagacttgagtctgtacagccgcatttaatggaccaagtaagtcatgctgctcaggtgccaacccatgatcttactgaccttagcactttaagatcatgggttaatattccttggggacggtccatggagtatgagatatataaggcgacaaatgcaatccagtgttataagaaggtatgtgccctaaagcctgagaagtcaattcccgatgccattctaagacaagcaaaaggccttgcaataatcactgctgtcaaggttggagttatggttacctacaatataggtacaggacttgtgattgctcgcagagaagatggctcttggtcccctccatctgctgtttcaaccttcggtgtaggatggggagcccaggtgaaatattttatctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

405

Amino Acids

45.41

Weight (kDa)

5.5

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29800 AT1G29800
fragaria_vesca	FvH4_3g07140 FvH4_3g07140 FvH4_3g07140
malus_domestica	MD00G1007600.v1.1 MD10G1274100.v1.1
prunus_persica	Prupe.4G068300_v2.0.a1 Prupe.4G068300_v2.0.a1
pyrus_communis	pycom05g27280 pycom10g22880
rosa_chinensis	RchiOBHm_Chr5g0011981
rosa_laevigata	RLG00000031876
rosa_multiflora	Rmu_sc0028144.1_g000001 Rmu_ssc0000009.1_g000036
rosa_roxburghii	Rroxscaffold_1G00064610
rosa_rugosa	Rorug04G0460200
rosa_samantha	Rh5AG092100 Rh5BG087900 Rh5CG101700 Rh5DG088500
rosa_wichuraiana	Rw5G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	990
AccB1I	GGYRCC	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	4 cut(s)	113, 363, 467, 842
AclWI	GGATC	2 cut(s)	617, 785
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	609
AfaI	GTAC	6 cut(s)	142, 204, 257, 603, 837, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	369, 756
AgsI	TTSAA	2 cut(s)	107, 1170
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	219, 591, 1194
AleI	CACNNNNGTG	1 cut(s)	631
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
Alw21I	GWGCWC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	617, 785
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	468, 567, 639, 1054
ApeKI	GCWGC	2 cut(s)	76, 869
ApoI	RAATTY	1 cut(s)	609
AspS9I	GGNCC	5 cut(s)	469, 568, 853, 942, 1149
AsuHPI	GGTGA	2 cut(s)	752, 1210
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	3 cut(s)	853, 942, 1149
BaeGI	GKGCMC	1 cut(s)	1006
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	1195
BbsI	GAAGAC	3 cut(s)	45, 90, 648
Bbv12I	GWGCWC	1 cut(s)	701
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	2 cut(s)	63, 856
BccI	CCATC	4 cut(s)	442, 1133, 1165, 1179
BceAI	ACGGC	2 cut(s)	22, 222
BcgI	CGANNNNNNTGC	4 cut(s)	632, 666, 695, 729
BciT130I	CCWGG	3 cut(s)	221, 593, 1196
BciVI	GTATCC	2 cut(s)	280, 294
BfaI	CTAG	3 cut(s)	57, 183, 702
BfuI	GTATCC	2 cut(s)	280, 294
BisI	GCNGC	4 cut(s)	77, 468, 842, 870
BlsI	GCNGC	4 cut(s)	78, 469, 843, 871
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	3 cut(s)	221, 593, 1196
Bme18I	GGWCC	3 cut(s)	853, 942, 1149
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	5 cut(s)	469, 568, 853, 942, 1149
BmiI	GGNNCC	3 cut(s)	879, 1151, 1192
BmrFI	CCNGG	3 cut(s)	221, 593, 1196
BmsI	GCATC	5 cut(s)	233, 259, 574, 715, 1021
BoxI	GACNNNNGTC	1 cut(s)	829
BpiI	GAAGAC	3 cut(s)	45, 90, 648
Bpu10I	CCTNAGC	3 cut(s)	795, 873, 902
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	566, 848
BsaAI	YACGTR	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	5 cut(s)	472, 750, 932, 945, 1194
BsaXI	ACNNNNNCTCC	4 cut(s)	1077, 1107, 1182, 1212
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 756
Bse1I	ACTGG	1 cut(s)	982
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	221, 593, 1196
BseDI	CCNNGG	5 cut(s)	472, 750, 932, 945, 1194
BseGI	GGATG	7 cut(s)	87, 424, 448, 518, 534, 685, 1190
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	369, 756
BseMII	CTCAG	3 cut(s)	809, 887, 1005
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	2 cut(s)	63, 856
BsgI	GTGCAG	2 cut(s)	62, 698
BshFI	GGCC	4 cut(s)	470, 569, 641, 1056
BshNI	GGYRCC	1 cut(s)	877
BsiHKAI	GWGCWC	1 cut(s)	701
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	951, 1135
BslI	CCNNNNNNNGG	2 cut(s)	369, 756
BsmFI	GGGAC	2 cut(s)	951, 1135
BsnI	GGCC	4 cut(s)	470, 569, 641, 1056
BsoBI	CYCGRG	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	701, 1006, 1195
Bsp1407I	TGTACA	2 cut(s)	601, 835
Bsp143I	GATC	5 cut(s)	10, 622, 790, 889, 914
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	4 cut(s)	113, 363, 467, 842
BspANI	GGCC	4 cut(s)	470, 569, 641, 1056
BspCNI	CTCAG	3 cut(s)	808, 886, 1006
BspLI	GGNNCC	3 cut(s)	879, 1151, 1192
BspPI	GGATC	2 cut(s)	617, 785
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	877
BsrGI	TGTACA	2 cut(s)	601, 835
BsrI	ACTGG	1 cut(s)	982
BssECI	CCNNGG	5 cut(s)	472, 750, 932, 945, 1194
BssMI	GATC	5 cut(s)	10, 622, 790, 889, 914
BssT1I	CCWWGG	3 cut(s)	750, 932, 945
Bst2UI	CCWGG	3 cut(s)	221, 593, 1196
Bst4CI	ACNGT	4 cut(s)	197, 713, 746, 942
Bst6I	CTCTTC	1 cut(s)	336
BstAUI	TGTACA	2 cut(s)	601, 835
BstBAI	YACGTR	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	6 cut(s)	235, 465, 552, 639, 677, 1129
BstDEI	CTNAG	5 cut(s)	795, 873, 902, 1014, 1040
BstDSI	CCRYGG	2 cut(s)	472, 945
BstEII	GGTNACC	1 cut(s)	1093
BstF5I	GGATG	7 cut(s)	87, 424, 448, 518, 534, 685, 1190
BstKTI	GATC	5 cut(s)	13, 625, 793, 892, 917
BstMBI	GATC	5 cut(s)	10, 622, 790, 889, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 334, 556, 593, 974
BstNI	CCWGG	3 cut(s)	221, 593, 1196
BstPAI	GACNNNNGTC	1 cut(s)	829
BstPI	GGTNACC	1 cut(s)	1093
BstSCI	CCNGG	3 cut(s)	219, 591, 1194
BstSLI	GKGCMC	1 cut(s)	1006
BstV1I	GCAGC	2 cut(s)	63, 856
BstV2I	GAAGAC	3 cut(s)	45, 90, 648
BstX2I	RGATCY	2 cut(s)	622, 790
BstXI	CCANNNNNNTGG	1 cut(s)	633
BstYI	RGATCY	2 cut(s)	622, 790
BsuI	GTATCC	2 cut(s)	280, 294
BsuRI	GGCC	4 cut(s)	470, 569, 641, 1056
BtgI	CCRYGG	2 cut(s)	472, 945
BtsCI	GGATG	7 cut(s)	87, 424, 448, 518, 534, 685, 1190
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	709, 989, 1068
Cac8I	GCNNGC	6 cut(s)	235, 465, 552, 639, 677, 1129
Cfr13I	GGNCC	5 cut(s)	469, 568, 853, 942, 1149
CseI	GACGC	2 cut(s)	53, 642
Csp6I	GTAC	6 cut(s)	141, 203, 256, 602, 836, 1110
CviQI	GTAC	6 cut(s)	141, 203, 256, 602, 836, 1110
DdeI	CTNAG	5 cut(s)	795, 873, 902, 1014, 1040
DpnI	GATC	5 cut(s)	12, 624, 792, 891, 916
DpnII	GATC	5 cut(s)	10, 622, 790, 889, 914
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	3 cut(s)	750, 932, 945
Eco147I	AGGCCT	1 cut(s)	1056
Eco24I	GRGCYC	1 cut(s)	1195
Eco47I	GGWCC	3 cut(s)	853, 942, 1149
Eco88I	CYCGRG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	1093
EcoO65I	GGTNACC	1 cut(s)	1093
EcoRII	CCWGG	3 cut(s)	219, 591, 1194
EcoT14I	CCWWGG	3 cut(s)	750, 932, 945
EcoT38I	GRGCYC	1 cut(s)	1195
ErhI	CCWWGG	3 cut(s)	750, 932, 945
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	2 cut(s)	951, 1135
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	77, 468, 842, 870
FokI	GGATG	7 cut(s)	74, 431, 455, 525, 541, 672, 1197
FriOI	GRGCYC	1 cut(s)	1195
Fsp4HI	GCNGC	4 cut(s)	77, 468, 842, 870
FspBI	CTAG	3 cut(s)	57, 183, 702
GluI	GCNGC	4 cut(s)	77, 468, 842, 870
HaeIII	GGCC	4 cut(s)	470, 569, 641, 1056
HgaI	GACGC	2 cut(s)	53, 642
HinfI	GANTC	4 cut(s)	179, 760, 801, 830
HphI	GGTGA	2 cut(s)	752, 1210
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	5 cut(s)	31, 67, 229, 244, 535
Hpy188III	TCNNGA	5 cut(s)	183, 383, 454, 614, 1028
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	205, 418, 750, 988, 1183
HpyCH4III	ACNGT	4 cut(s)	197, 713, 746, 942
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	79, 328, 679, 788, 977, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 334, 556, 593, 974
HpyF3I	CTNAG	5 cut(s)	795, 873, 902, 1014, 1040
HpySE526I	ACGT	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	10, 622, 790, 889, 914
LmnI	GCTCC	3 cut(s)	244, 277, 1190
Lsp1109I	GCAGC	2 cut(s)	63, 856
LweI	GCATC	5 cut(s)	233, 259, 574, 715, 1021
MaeI	CTAG	3 cut(s)	57, 183, 702
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	740, 1093
MalI	GATC	5 cut(s)	12, 624, 792, 891, 916
MboI	GATC	5 cut(s)	10, 622, 790, 889, 914
MboII	GAAGA	6 cut(s)	45, 95, 200, 353, 648, 1148
MflI	RGATCY	2 cut(s)	622, 790
MhlI	GDGCHC	3 cut(s)	701, 1006, 1195
MluCI	AATT	4 cut(s)	25, 94, 609, 1023
MlyI	GAGTC	3 cut(s)	769, 810, 839
MmeI	TCCRAC	2 cut(s)	558, 1063
MnlI	CCTC	6 cut(s)	119, 193, 277, 719, 804, 1164
MseI	TTAA	4 cut(s)	848, 911, 924, 1216
MslI	CAYNNNNRTG	2 cut(s)	603, 631
MspR9I	CCNGG	3 cut(s)	221, 593, 1196
MvaI	CCWGG	3 cut(s)	221, 593, 1196
MwoI	GCNNNNNNNGC	5 cut(s)	230, 334, 556, 593, 974
NcoI	CCATGG	1 cut(s)	945
NdeII	GATC	5 cut(s)	10, 622, 790, 889, 914
NlaIV	GGNNCC	3 cut(s)	879, 1151, 1192
NmuCI	GTSAC	1 cut(s)	740
NspV	TTCGAA	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	1056
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	78, 469, 843, 871
PleI	GAGTC	3 cut(s)	768, 809, 838
PpsI	GAGTC	3 cut(s)	768, 809, 838
Ppu21I	YACGTR	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	990
Psp6I	CCWGG	3 cut(s)	219, 591, 1194
PspEI	GGTNACC	1 cut(s)	1093
PspGI	CCWGG	3 cut(s)	219, 591, 1194
PspN4I	GGNNCC	3 cut(s)	879, 1151, 1192
PspPI	GGNCC	5 cut(s)	469, 568, 853, 942, 1149
PsuI	RGATCY	2 cut(s)	622, 790
RsaI	GTAC	6 cut(s)	142, 204, 257, 603, 837, 1111
RsaNI	GTAC	6 cut(s)	141, 203, 256, 602, 836, 1110
RseI	CAYNNNNRTG	2 cut(s)	603, 631
SaqAI	TTAA	4 cut(s)	848, 911, 924, 1216
SatI	GCNGC	4 cut(s)	77, 468, 842, 870
Sau3AI	GATC	5 cut(s)	10, 622, 790, 889, 914
Sau96I	GGNCC	5 cut(s)	469, 568, 853, 942, 1149
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	3 cut(s)	769, 810, 839
ScrFI	CCNGG	3 cut(s)	221, 593, 1196
SduI	GDGCHC	3 cut(s)	701, 1006, 1195
SfaNI	GCATC	5 cut(s)	233, 259, 574, 715, 1021
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	3 cut(s)	853, 942, 1149
SmiMI	CAYNNNNRTG	2 cut(s)	603, 631
SmlI	CTYRAG	2 cut(s)	545, 827
SmoI	CTYRAG	2 cut(s)	545, 827
Sse9I	AATT	4 cut(s)	25, 94, 609, 1023
SseBI	AGGCCT	1 cut(s)	1056
SsiI	CCGC	4 cut(s)	113, 363, 467, 842
SspI	AATATT	3 cut(s)	732, 928, 1205
SspMI	CTAG	3 cut(s)	57, 183, 702
StuI	AGGCCT	1 cut(s)	1056
StyD4I	CCNGG	3 cut(s)	219, 591, 1194
StyI	CCWWGG	3 cut(s)	750, 932, 945
TaaI	ACNGT	4 cut(s)	197, 713, 746, 942
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	36, 98, 453
TasI	AATT	4 cut(s)	25, 94, 609, 1023
TatI	WGTACW	3 cut(s)	255, 601, 835
TauI	GCSGC	2 cut(s)	470, 844
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	4 cut(s)	848, 911, 924, 1216
Tru9I	TTAA	4 cut(s)	848, 911, 924, 1216
TscAI	CASTG	3 cut(s)	716, 989, 1075
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	2 cut(s)	76, 869
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	6 cut(s)	177, 354, 477, 513, 621, 674
TspGWI	ACGGA	2 cut(s)	301, 770
TspRI	CASTG	3 cut(s)	716, 989, 1075
VpaK11BI	GGWCC	3 cut(s)	853, 942, 1149
XapI	RAATTY	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	517
XspI	CTAG	3 cut(s)	57, 183, 702
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.