AT1G31040

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016159
Physical Location & Seq
Reverse (-)
11069510 .. 11072564
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31040.1

Sequence Viewer

Length: 732 bp
ATGGTTAGAGAAGGTGAAGAAGAAGAAGAGATGATGATGATGATGGCAACGAAACCTGCATGGCTTGAAGGTTTAATGGCGGAGACTTTCTTCTCAAGCTGTGGAATCCACGAAACTCGCCGTAAAAGTGAAAAGAACGTTTTTTGCTTACTCTGTTGTCTCAGTGTTTGTCCTCACTGTCTCCCTTCTCATCGCTCTCATCCTCTTCTTCAGGTGAGACGATACGTATACCACGACGTCGTTCGGTTGAGTGATCTTGAGAAGCTCATAGATTGTTCATATGTTCAGCCATATACAATTAATGGAGCCAAAGTGATATTCTTAAACCAAAGACAACAATCACGAGCTAAGGTTTCTTCAAATGTTTGCTTCACTTGTGATAGAATCCTTCAAGAACCATTCCACTTTTGTTCCCTCTCTTGCAAGGTGGATTATTTATCATATCAAGGAGATGATTTATCAAGCATTCTCTATAGAATTGATGAATCAGATTTTACGTTCGAGGGTTTGAGAATGGACGGACATGATCAGCTCGGAGAGATATCGACGATGGAGGATGGGGAGGATATACTGGTAATTTCAGATGAATCTGAGCAAGGTAACAATAGTCATAAGAAAGAGAAGAAGAAGAGCAAGAAGAAGAAGCCAGAGAGCAATTACTTGCCTGGGATGGTTCTTTCATCACTTGGTAATAGAAGAAAAGGTGCTCCTCATAGGGCTCCTTTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

243

Amino Acids

27.88

Weight (kDa)

6.32

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 73 - 143 1.6e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31040
fragaria_vesca FvH4_3g12690
malus_domestica MD05G1248500.v1.1 MD10G1229000.v1.1
prunus_persica Prupe.4G115600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020661
rosa_laevigata RLG00000032550
rosa_multiflora Rmu_sc0005607.1_g000024
rosa_roxburghii Rroxscaffold_1G00057620
rosa_rugosa Rorug05G0062300
rosa_samantha Rh5AG152000 Rh5BG151700 Rh5CG163000 Rh5DG150900
rosa_wichuraiana Rw5G013470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 80
AclI AACGTT 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 3 cut(s) 68, 360, 392
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 4 cut(s) 99, 265, 347, 532
AluI AGCT 4 cut(s) 99, 265, 347, 532
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 4 cut(s) 77, 164, 185, 211
AseI ATTAAT 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 26, 226
BanII GRGCYC 1 cut(s) 721
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 709
BccI CCATC 4 cut(s) 37, 544, 551, 664
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 4 cut(s) 77, 164, 185, 211
BfmI CTRYAG 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 666
BmiI GGNNCC 2 cut(s) 307, 720
BmrFI CCNGG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 79, 278
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse1I ACTGG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 3 cut(s) 199, 562, 675
BseMII CTCAG 2 cut(s) 175, 582
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 699
BsiHKAI GWGCWC 1 cut(s) 709
BsmAI GTCTC 4 cut(s) 77, 164, 185, 211
BsmBI CGTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 709, 721
Bsp143I GATC 2 cut(s) 253, 526
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 174, 583
BspLI GGNNCC 2 cut(s) 307, 720
BspMI ACCTGC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 623
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 2 cut(s) 253, 526
BssNAI GTATAC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 3 cut(s) 21, 210, 623
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 161, 348, 591
BstF5I GGATG 3 cut(s) 199, 562, 675
BstKTI GATC 2 cut(s) 256, 529
BstMAI GTCTC 4 cut(s) 77, 164, 185, 211
BstMBI GATC 2 cut(s) 253, 526
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 472
BstSNI TACGTA 1 cut(s) 226
BstZ17I GTATAC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 3 cut(s) 199, 562, 675
BtsIMutI CAGTG 2 cut(s) 169, 175
BveI ACCTGC 1 cut(s) 64
CviAII CATG 2 cut(s) 60, 524
CviJI RGCY 9 cut(s) 64, 99, 265, 289, 308, 347, 532, 646, 719
CviKI_1 RGCY 9 cut(s) 64, 99, 265, 289, 308, 347, 532, 646, 719
DdeI CTNAG 3 cut(s) 161, 348, 591
DpnI GATC 2 cut(s) 255, 528
DpnII GATC 2 cut(s) 253, 526
Eam1104I CTCTTC 3 cut(s) 21, 210, 623
EarI CTCTTC 3 cut(s) 21, 210, 623
EciI GGCGGA 1 cut(s) 95
Eco105I TACGTA 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 721
Eco32I GATATC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 721
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 2 cut(s) 63, 527
FatI CATG 2 cut(s) 59, 523
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 228
FokI GGATG 3 cut(s) 186, 569, 682
FriOI GRGCYC 1 cut(s) 721
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 63, 527
HinfI GANTC 4 cut(s) 105, 384, 485, 587
HphI GGTGA 2 cut(s) 26, 226
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 4 cut(s) 490, 536, 583, 592
Hpy188III TCNNGA 3 cut(s) 257, 342, 392
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 3 cut(s) 239, 242, 550
HpyAV CCTTC 4 cut(s) 5, 62, 195, 398
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 4 cut(s) 138, 225, 237, 497
HpyCH4V TGCA 2 cut(s) 59, 423
HpyF3I CTNAG 3 cut(s) 161, 348, 591
HpySE526I ACGT 4 cut(s) 138, 225, 237, 497
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 63, 527
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 253, 526
LguI GCTCTTC 1 cut(s) 623
LmnI GCTCC 3 cut(s) 305, 712, 724
LpnPI CCDG 6 cut(s) 69, 197, 557, 651, 660, 678
MaeII ACGT 4 cut(s) 138, 225, 237, 497
MaeIII GTNAC 1 cut(s) 599
MalI GATC 2 cut(s) 255, 528
MboI GATC 2 cut(s) 253, 526
MhlI GDGCHC 2 cut(s) 709, 721
MluCI AATT 4 cut(s) 297, 477, 576, 655
MnlI CCTC 7 cut(s) 183, 213, 425, 496, 547, 556, 720
MseI TTAA 3 cut(s) 74, 300, 323
MspR9I CCNGG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 253, 526
NlaIII CATG 2 cut(s) 63, 527
NlaIV GGNNCC 2 cut(s) 307, 720
PciSI GCTCTTC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 105, 384, 485, 587
Ppu21I YACGTR 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 307, 720
SapI GCTCTTC 1 cut(s) 623
SaqAI TTAA 3 cut(s) 74, 300, 323
Sau3AI GATC 2 cut(s) 253, 526
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 2 cut(s) 709, 721
SfcI CTRYAG 1 cut(s) 472
SmlI CTYRAG 2 cut(s) 94, 257
SmoI CTYRAG 2 cut(s) 94, 257
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 4 cut(s) 297, 477, 576, 655
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 664
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 4 cut(s) 141, 228, 240, 500
TaqI TCGA 2 cut(s) 501, 545
TasI AATT 4 cut(s) 297, 477, 576, 655
TfiI GAWTC 4 cut(s) 105, 384, 485, 587
Tru1I TTAA 3 cut(s) 74, 300, 323
Tru9I TTAA 3 cut(s) 74, 300, 323
TscAI CASTG 2 cut(s) 169, 182
TspDTI ATGAA 5 cut(s) 267, 498, 600, 669, 717
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 2 cut(s) 169, 182
VspI ATTAAT 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 228
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.