MD05G1248500.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016159
Physical Location & Seq
Forward (+)
37994133 .. 37997028
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1248500.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGTGAGAGATGCGTATGGTGGCCATGGTGGTGGAAACACTATTAAGCCTGCATGGCTTGAGCGTTTAATGGCCGAGACATTCTTTGGCGGGTGCGAGGTCCACGACAGCCGCCGGAAGAATGAGAAGAACGTCTTCTGTCTGCACTGCTGCCTTAGTATTTGCCCCCACTGCCTCCCTTCTCACCGCCTCCACCCACTCCTGCAGATTAGACGATATGTATACCATGATGTGGTTCGATTGGGTGATCTTGAAAAGCTGATTGACTGTTCCTATATCCAGCCCTATACAATTAACGGTGCCAAAGTGATATTCTTGAATCAGAGGCCGCATACACAGTCCAGGACTTGCAAGCAGGGCTCTGCCAATATCTGCCTCACTTGTGACAGGATTCTCCAAGAGCCATTCCACTTTTGTTCTCTCTCGTGCAAGGTTGACCATCTGGTGTACCAAGGGCAAGATTTATCTGGTGTACTCTACCGATTTGATGCGTCCGACTTCACGATCTCTCAGTTCGAAGGATTACGCATGGACGGCTCAGAGATGACTGAGGATGATGGCCACATAATGCCTAGCTCCACCATAGAAGACCCTCTGCAATACAGAGCTTCGTCATGCTCCAGCGAAGCCACCAGCGACTCAATAATGTCGCGAGAACCGGGGGTTATCAAGAAGAAGAAGAAAAGCAGCGGATTCCTCCCGGGGATTGTCCTCTCCCTTAGCAGCAGGAGAAAGGGTGCTCCTCAGAGAGCTCCTCTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

255

Amino Acids

28.49

Weight (kDa)

8.39

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 71 - 145 2.7e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31040
fragaria_vesca FvH4_3g12690
malus_domestica MD05G1248500.v1.1 MD10G1229000.v1.1
prunus_persica Prupe.4G115600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020661
rosa_laevigata RLG00000032550
rosa_multiflora Rmu_sc0005607.1_g000024
rosa_roxburghii Rroxscaffold_1G00057620
rosa_rugosa Rorug05G0062300
rosa_samantha Rh5AG152000 Rh5BG151700 Rh5CG163000 Rh5DG150900
rosa_wichuraiana Rw5G013470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 232
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 652
AciI CCGC 5 cut(s) 90, 112, 187, 329, 690
AcoI YGGCCR 3 cut(s) 22, 72, 559
AfaI GTAC 2 cut(s) 449, 474
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 254, 319
AjnI CCWGG 1 cut(s) 341
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 259, 576, 608, 752
AluI AGCT 4 cut(s) 259, 576, 608, 752
Alw21I GWGCWC 2 cut(s) 742, 754
Alw26I GTCTC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 4 cut(s) 22, 72, 326, 559
ApeKI GCWGC 3 cut(s) 150, 687, 723
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 3 cut(s) 660, 701, 702
AsuHPI GGTGA 3 cut(s) 16, 176, 257
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 2 cut(s) 24, 561
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 362, 754
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 127, 594
Bbv12I GWGCWC 2 cut(s) 742, 754
BbvI GCAGC 3 cut(s) 137, 699, 735
BccI CCATC 2 cut(s) 447, 551
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 3 cut(s) 660, 701, 702
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 5 cut(s) 112, 151, 329, 688, 724
BlsI GCNGC 5 cut(s) 113, 152, 330, 689, 725
Bme1390I CCNGG 4 cut(s) 343, 660, 701, 702
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 4 cut(s) 343, 660, 701, 702
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 127, 594
BplI GAGNNNNNCTC 1 cut(s) 739
BpmI CTGGAG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 719
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 3 cut(s) 660, 701, 702
BsaJI CCNNGG 5 cut(s) 25, 451, 659, 700, 701
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 25, 451, 659, 700, 701
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 4 cut(s) 524, 540, 552, 758
BseRI GAGGAG 2 cut(s) 732, 744
BseXI GCAGC 3 cut(s) 137, 699, 735
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 652
BshFI GGCC 4 cut(s) 24, 74, 328, 561
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 742, 754
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 3 cut(s) 115, 659, 701
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 4 cut(s) 24, 74, 328, 561
BsoBI CYCGRG 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 362, 742, 754
Bsp143I GATC 2 cut(s) 247, 504
Bsp19I CCATGG 1 cut(s) 25
Bsp68I TCGCGA 1 cut(s) 652
BspACI CCGC 5 cut(s) 90, 112, 187, 329, 690
BspANI GGCC 4 cut(s) 24, 74, 328, 561
BspCNI CTCAG 4 cut(s) 523, 541, 551, 757
BspFNI CGCG 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 299
BssECI CCNNGG 5 cut(s) 25, 451, 659, 700, 701
BssMI GATC 2 cut(s) 247, 504
BssNAI GTATAC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 2 cut(s) 25, 451
Bst1107I GTATAC 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 3 cut(s) 269, 299, 339
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 51, 353
BstDEI CTNAG 7 cut(s) 155, 510, 538, 549, 719, 744, 762
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 652
BstKTI GATC 2 cut(s) 250, 507
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 247, 504
BstMWI GCNNNNNNNGC 4 cut(s) 55, 171, 357, 534
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 4 cut(s) 341, 658, 699, 700
BstSFI CTRYAG 1 cut(s) 203
BstUI CGCG 1 cut(s) 652
BstV1I GCAGC 3 cut(s) 137, 699, 735
BstV2I GAAGAC 2 cut(s) 127, 594
BstXI CCANNNNNNTGG 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 223
BsuRI GGCC 4 cut(s) 24, 74, 328, 561
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 2 cut(s) 145, 169
BtsIMutI CAGTG 2 cut(s) 145, 169
BtuMI TCGCGA 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 51, 353
Cfr13I GGNCC 1 cut(s) 100
Cfr9I CCCGGG 1 cut(s) 700
CseI GACGC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 448, 473
CviAII CATG 5 cut(s) 26, 54, 227, 529, 615
CviQI GTAC 2 cut(s) 448, 473
DdeI CTNAG 7 cut(s) 155, 510, 538, 549, 719, 744, 762
DpnI GATC 2 cut(s) 249, 506
DpnII GATC 2 cut(s) 247, 504
EaeI YGGCCR 3 cut(s) 22, 72, 559
Ecl136II GAGCTC 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 25, 451
Eco24I GRGCYC 2 cut(s) 362, 754
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 752
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 25, 451
EcoT38I GRGCYC 2 cut(s) 362, 754
ErhI CCWWGG 2 cut(s) 25, 451
FaeI CATG 5 cut(s) 29, 57, 230, 532, 618
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 5 cut(s) 25, 53, 226, 528, 614
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 5 cut(s) 112, 151, 329, 688, 724
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 2 cut(s) 362, 754
Fsp4HI GCNGC 5 cut(s) 112, 151, 329, 688, 724
FspBI CTAG 1 cut(s) 573
GluI GCNGC 5 cut(s) 112, 151, 329, 688, 724
GsuI CTGGAG 1 cut(s) 604
HaeIII GGCC 4 cut(s) 24, 74, 328, 561
HapII CCGG 3 cut(s) 115, 659, 701
HgaI GACGC 1 cut(s) 480
Hin1II CATG 5 cut(s) 29, 57, 230, 532, 618
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 319, 391, 638, 693
HpaII CCGG 3 cut(s) 115, 659, 701
HphI GGTGA 3 cut(s) 16, 176, 257
Hpy166II GTNNAC 5 cut(s) 103, 223, 436, 448, 473
Hpy188I TCNGA 4 cut(s) 324, 496, 541, 747
Hpy188III TCNNGA 5 cut(s) 251, 316, 502, 651, 670
Hpy8I GTNNAC 5 cut(s) 103, 223, 436, 448, 473
HpyAV CCTTC 2 cut(s) 189, 512
HpyCH4III ACNGT 3 cut(s) 269, 299, 339
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 6 cut(s) 53, 145, 205, 351, 429, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 171, 357, 534
HpyF3I CTNAG 7 cut(s) 155, 510, 538, 549, 719, 744, 762
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 5 cut(s) 29, 57, 230, 532, 618
Kzo9I GATC 2 cut(s) 247, 504
LmnI GCTCC 4 cut(s) 581, 623, 745, 757
Lsp1109I GCAGC 3 cut(s) 137, 699, 735
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 249, 506
MboI GATC 2 cut(s) 247, 504
MboII GAAGA 7 cut(s) 127, 130, 139, 599, 685, 688, 691
MhlI GDGCHC 3 cut(s) 362, 742, 754
MlsI TGGCCA 2 cut(s) 24, 561
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 2 cut(s) 24, 561
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 519
Mox20I TGGCCA 2 cut(s) 24, 561
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 2 cut(s) 24, 561
MseI TTAA 3 cut(s) 45, 68, 294
MslI CAYNNNNRTG 1 cut(s) 30
Msp20I TGGCCA 2 cut(s) 24, 561
MspA1I CMGCKG 1 cut(s) 690
MspI CCGG 3 cut(s) 115, 659, 701
MspR9I CCNGG 4 cut(s) 343, 660, 701, 702
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 652
MwoI GCNNNNNNNGC 4 cut(s) 55, 171, 357, 534
NciI CCSGG 3 cut(s) 660, 701, 702
NcoI CCATGG 1 cut(s) 25
NdeII GATC 2 cut(s) 247, 504
NlaIII CATG 5 cut(s) 29, 57, 230, 532, 618
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 383
NruI TCGCGA 1 cut(s) 652
NspV TTCGAA 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 319, 391, 693
PflMI CCANNNNNTGG 1 cut(s) 232
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 5 cut(s) 113, 152, 330, 689, 725
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 207
RruI TCGCGA 1 cut(s) 652
RsaI GTAC 2 cut(s) 449, 474
RsaNI GTAC 2 cut(s) 448, 473
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 754
SaqAI TTAA 3 cut(s) 45, 68, 294
SatI GCNGC 5 cut(s) 112, 151, 329, 688, 724
Sau3AI GATC 2 cut(s) 247, 504
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 4 cut(s) 343, 660, 701, 702
SduI GDGCHC 3 cut(s) 362, 742, 754
SetI ASST 7 cut(s) 102, 135, 261, 435, 578, 610, 754
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 291
SsiI CCGC 5 cut(s) 90, 112, 187, 329, 690
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 754
StyD4I CCNGG 4 cut(s) 341, 658, 699, 700
StyI CCWWGG 2 cut(s) 25, 451
TaaI ACNGT 3 cut(s) 269, 299, 339
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 238, 516
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 472
TauI GCSGC 2 cut(s) 114, 331
TfiI GAWTC 3 cut(s) 319, 391, 693
Tru1I TTAA 3 cut(s) 45, 68, 294
Tru9I TTAA 3 cut(s) 45, 68, 294
TscAI CASTG 2 cut(s) 152, 176
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 150, 687, 723
Tsp45I GTSAC 1 cut(s) 383
TspMI CCCGGG 1 cut(s) 700
TspRI CASTG 2 cut(s) 152, 176
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 100
XmaI CCCGGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.