MD10G1229000.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016159
Physical Location & Seq
Forward (+)
32592216 .. 32595767
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1229000.v1.1.491

Sequence Viewer

Length: 768 bp
ATGGTGACAGAATCGTATGGTGGCGGTGGTGGTGGAAACAACATTAAGCCTGCATGGCTTGAGCGTTTAATGGCCGAGACATTCTTTGGCGGGTGCGGGGTCCACCACAGCCGCCGGAAAAACGAGAAGAACGTCTTCTGTTTGCACTGCTGCCTTAGTATTTGCCCCCACTGCCTCTCTTCTCACCGCCTCCATCCTCTCCTGCAGGTTAGACGATATGTGTACCATGATGTGGTTCGATTGGGTGATCTTGAAAAGCTGATTGACTGTTCCTATACCCAGCCCTATACAATTAACGGTGCCAAAGTGATATTCTTGAATCAGAGGCCACAGACACAGTCTAGGACTTGCAAGCAGGGCTCTGCCAACATCTGCCTCACTTGCGACAGGATTCTCCAAGAGCCATTCCACTTTTGTTCTCTCTCTTGCAAGGTTGATCATCTGGTGTACCAAGGGCAAGATTTATCTGGTATACTCTACCGATTTGATGCGTCCGACTTCACCATCTCTCAGTTCGAAGGATTACGCATGGACGGCTTGGAGATGACCGAGGATGATGGCCACATGATGCCTAGCTCCACCGTAGAAGACCCTCAGCAATACAGAGCTTCGTCATGCTCCAATGAAGCAACCAGTGATTCGGTAATGTCGCAAGAAACAGAGGTTATCAAGAAGAAGAAGAAGAAAAGCAGTGGATTCCTCCCTGGGATTGTCCTCTCCCTTAGCAGCAGGAGAAAGGGTGCTCCTCAGAGAGCTCCTCTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

256

Amino Acids

28.55

Weight (kDa)

8.39

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 71 - 145 2.2e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31040
fragaria_vesca FvH4_3g12690
malus_domestica MD05G1248500.v1.1 MD10G1229000.v1.1
prunus_persica Prupe.4G115600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020661
rosa_laevigata RLG00000032550
rosa_multiflora Rmu_sc0005607.1_g000024
rosa_roxburghii Rroxscaffold_1G00057620
rosa_rugosa Rorug05G0062300
rosa_samantha Rh5AG152000 Rh5BG151700 Rh5CG163000 Rh5DG150900
rosa_wichuraiana Rw5G013470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 232
AccI GTMKAC 1 cut(s) 472
AciI CCGC 5 cut(s) 24, 90, 96, 112, 187
AcoI YGGCCR 2 cut(s) 72, 559
AfaI GTAC 2 cut(s) 224, 449
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 254, 319
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 259, 576, 608, 755
AluI AGCT 4 cut(s) 259, 576, 608, 755
Alw21I GWGCWC 2 cut(s) 745, 757
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 3 cut(s) 72, 326, 559
ApeKI GCWGC 2 cut(s) 150, 726
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 4 cut(s) 16, 176, 257, 493
AsuII TTCGAA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 561
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 362, 757
BbsI GAAGAC 2 cut(s) 127, 594
Bbv12I GWGCWC 2 cut(s) 745, 757
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 137, 738
BccI CCATC 3 cut(s) 201, 512, 551
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 2 cut(s) 342, 573
BfmI CTRYAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 3 cut(s) 112, 151, 727
BlsI GCNGC 3 cut(s) 113, 152, 728
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 2 cut(s) 101, 301
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 2 cut(s) 478, 558
BpiI GAAGAC 2 cut(s) 127, 594
BplI GAGNNNNNCTC 1 cut(s) 742
Bpu10I CCTNAGC 2 cut(s) 594, 722
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 451, 549, 703, 704
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 633
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 451, 549, 703, 704
BseGI GGATG 2 cut(s) 193, 559
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 524, 608, 761
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 2 cut(s) 735, 747
BseXI GCAGC 2 cut(s) 137, 738
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 3 cut(s) 74, 328, 561
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 745, 757
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 3 cut(s) 74, 328, 561
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 362, 745, 757
Bsp143I GATC 2 cut(s) 247, 436
BspACI CCGC 5 cut(s) 24, 90, 96, 112, 187
BspANI GGCC 3 cut(s) 74, 328, 561
BspCNI CTCAG 3 cut(s) 523, 607, 760
BspLI GGNNCC 2 cut(s) 101, 301
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 633
BssECI CCNNGG 4 cut(s) 451, 549, 703, 704
BssMI GATC 2 cut(s) 247, 436
BssNAI GTATAC 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 4 cut(s) 269, 299, 339, 583
Bst6I CTCTTC 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 51, 353
BstDEI CTNAG 6 cut(s) 155, 510, 594, 722, 747, 765
BstF5I GGATG 2 cut(s) 193, 559
BstKTI GATC 2 cut(s) 250, 439
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 247, 436
BstMWI GCNNNNNNNGC 5 cut(s) 55, 171, 357, 381, 534
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 137, 738
BstV2I GAAGAC 2 cut(s) 127, 594
BstZ17I GTATAC 1 cut(s) 473
BsuRI GGCC 3 cut(s) 74, 328, 561
BtsCI GGATG 2 cut(s) 193, 559
BtsI GCAGTG 3 cut(s) 145, 169, 697
BtsIMutI CAGTG 4 cut(s) 145, 169, 640, 697
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 51, 353
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 223, 448
CviAII CATG 5 cut(s) 54, 227, 529, 565, 615
CviQI GTAC 2 cut(s) 223, 448
DdeI CTNAG 6 cut(s) 155, 510, 594, 722, 747, 765
DpnI GATC 2 cut(s) 249, 438
DpnII GATC 2 cut(s) 247, 436
EaeI YGGCCR 2 cut(s) 72, 559
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 2 cut(s) 362, 757
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 755
EcoICRI GAGCTC 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 2 cut(s) 362, 757
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 57, 230, 532, 568, 618
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 5 cut(s) 53, 226, 528, 564, 614
FauI CCCGC 2 cut(s) 83, 89
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 112, 151, 727
FokI GGATG 2 cut(s) 180, 566
FriOI GRGCYC 2 cut(s) 362, 757
Fsp4HI GCNGC 3 cut(s) 112, 151, 727
FspBI CTAG 2 cut(s) 342, 573
GluI GCNGC 3 cut(s) 112, 151, 727
GsaI CCCAGC 1 cut(s) 283
HaeIII GGCC 3 cut(s) 74, 328, 561
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 480
Hin1II CATG 5 cut(s) 57, 230, 532, 568, 618
HinfI GANTC 5 cut(s) 11, 319, 391, 638, 696
HpaII CCGG 1 cut(s) 115
HphI GGTGA 4 cut(s) 16, 176, 257, 493
Hpy166II GTNNAC 4 cut(s) 103, 223, 448, 473
Hpy188I TCNGA 3 cut(s) 324, 496, 750
Hpy188III TCNNGA 3 cut(s) 251, 316, 670
Hpy8I GTNNAC 4 cut(s) 103, 223, 448, 473
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 4 cut(s) 269, 299, 339, 583
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 53, 145, 205, 351, 429
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 171, 357, 381, 534
HpyF3I CTNAG 6 cut(s) 155, 510, 594, 722, 747, 765
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 5 cut(s) 57, 230, 532, 568, 618
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 247, 436
LmnI GCTCC 4 cut(s) 581, 623, 748, 760
Lsp1109I GCAGC 2 cut(s) 137, 738
LweI GCATC 2 cut(s) 478, 558
MaeI CTAG 2 cut(s) 342, 573
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 249, 438
MboI GATC 2 cut(s) 247, 436
MboII GAAGA 8 cut(s) 127, 139, 171, 599, 685, 688, 691, 694
MhlI GDGCHC 3 cut(s) 362, 745, 757
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 561
MmeI TCCRAC 1 cut(s) 519
Mox20I TGGCCA 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 561
MseI TTAA 3 cut(s) 45, 68, 294
Msp20I TGGCCA 1 cut(s) 561
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 5 cut(s) 55, 171, 357, 381, 534
NdeII GATC 2 cut(s) 247, 436
NlaIII CATG 5 cut(s) 57, 230, 532, 568, 618
NlaIV GGNNCC 2 cut(s) 101, 301
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 1 cut(s) 516
PasI CCCWGGG 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 5 cut(s) 11, 319, 391, 638, 696
PflFI GACNNNGTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 3 cut(s) 113, 152, 728
Psp124BI GAGCTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 101, 301
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 207
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 2 cut(s) 224, 449
RsaNI GTAC 2 cut(s) 223, 448
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 3 cut(s) 45, 68, 294
SatI GCNGC 3 cut(s) 112, 151, 727
Sau3AI GATC 2 cut(s) 247, 436
Sau96I GGNCC 1 cut(s) 100
SbfI CCTGCAGG 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 705
SdaI CCTGCAGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 362, 745, 757
SetI ASST 8 cut(s) 135, 210, 261, 435, 578, 610, 666, 757
SfaNI GCATC 2 cut(s) 478, 558
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse8387I CCTGCAGG 1 cut(s) 207
Sse9I AATT 1 cut(s) 291
SsiI CCGC 5 cut(s) 24, 90, 96, 112, 187
SspMI CTAG 2 cut(s) 342, 573
SstI GAGCTC 1 cut(s) 757
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 4 cut(s) 269, 299, 339, 583
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 238, 516
TaqII GACCGA 1 cut(s) 563
TasI AATT 1 cut(s) 291
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 5 cut(s) 11, 319, 391, 638, 696
Tru1I TTAA 3 cut(s) 45, 68, 294
Tru9I TTAA 3 cut(s) 45, 68, 294
TscAI CASTG 4 cut(s) 152, 176, 640, 697
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 150, 726
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 639
TspRI CASTG 4 cut(s) 152, 176, 640, 697
Tth111I GACNNNGTC 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 2 cut(s) 342, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.