FvH4_3g12690

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016159
Physical Location & Seq
Reverse (-)
7580504 .. 7584059
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12690.t1

Sequence Viewer

Length: 813 bp
ATGGTGAGACATCATCGTCATCATCAGAGAGTAGATGTCTCTGCTTCTTCATCCACAACATGTATGGAGGATGATGAAATGAATCACATGAAGCCTGCATGGCTACAAGGTTTGATGGGGGAGACATTCTTTGGTGGTTGTGGGGTCCACGAGAACCGCAGGAAGAGCGAGAAGAACGTCTTCTGTTTGCACTGTTGCCTCTCTATTTGCCCACACTGCCTTCACTCTCATCGCTCTCATCCTCTACTTCAGGTTAGAAGATATGTGTACCATGATGTGGTTAGATTGGGTGATCTTGAGAAGCTCATTGACTGTTCCTATATTCAGCCCTATTCCAATAACGGTGCCAAAGTAATATTCTTGAACCAGAGGCCACAGTCGAGGCCACTTTCCAGGACTAATTGCAACAAAGGGTTTGCTGCCAATATCTGTTACACTTGTGACAGGATTCTCCAAGAGCCATTCCGCTTTTGTTCTCTCTCATGCAAGGTCGATCACTTGGTGCTCCAAGAGGAAGATTTATCCGGCATACTCTACAATTTTGATGAATCTGACTTCACAATCTCTCAATTCGAGGGACTACGGATGGATGGCTCGGAGGTGACCGATGACGATGACCAAAGGATGCCTAGCTCTATCCTAGAGGATCCTGAAATGCAGTACAGAGGCTCTTCATGCTCCAACAGCGATTCAGTAATGTCACGTGAACCAGAGGTCGTCTTCAAGAAGAAGAAGAAAGGGATACTCCCAGGGATCATGCTCTCCCTCAGCAGCAGGAGAAAGGGTGCTCCTCAGAGGGCTCCTCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

271

Amino Acids

30.86

Weight (kDa)

7.17

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 86 - 164 5.5e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31040
fragaria_vesca FvH4_3g12690
malus_domestica MD05G1248500.v1.1 MD10G1229000.v1.1
prunus_persica Prupe.4G115600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020661
rosa_laevigata RLG00000032550
rosa_multiflora Rmu_sc0005607.1_g000024
rosa_roxburghii Rroxscaffold_1G00057620
rosa_rugosa Rorug05G0062300
rosa_samantha Rh5AG152000 Rh5BG151700 Rh5CG163000 Rh5DG150900
rosa_wichuraiana Rw5G013470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 277
AciI CCGC 2 cut(s) 157, 466
AclWI GGATC 3 cut(s) 641, 654, 761
AcuI CTGAAG 1 cut(s) 233
AcvI CACGTG 1 cut(s) 704
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 2 cut(s) 269, 662
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 364, 724
AjnI CCWGG 2 cut(s) 392, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 304, 633
AluI AGCT 2 cut(s) 304, 633
Alw21I GWGCWC 2 cut(s) 507, 790
Alw26I GTCTC 2 cut(s) 43, 116
AlwI GGATC 3 cut(s) 641, 654, 761
AoxI GGCC 2 cut(s) 371, 383
ApeKI GCWGC 2 cut(s) 419, 771
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 16, 302, 613
AvaII GGWCC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 802
BauI CACGAG 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 172, 712
Bbv12I GWGCWC 2 cut(s) 507, 790
BbvCI CCTCAGC 1 cut(s) 767
BbvI GCAGC 2 cut(s) 406, 783
BccI CCATC 3 cut(s) 109, 580, 584
BciT130I CCWGG 2 cut(s) 394, 750
BciVI GTATCC 1 cut(s) 735
BcoDI GTCTC 2 cut(s) 43, 116
BfaI CTAG 2 cut(s) 630, 641
BfuI GTATCC 1 cut(s) 735
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 2 cut(s) 420, 772
BlsI GCNGC 2 cut(s) 421, 773
Bme1390I CCNGG 2 cut(s) 394, 750
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 4 cut(s) 146, 346, 648, 801
BmrFI CCNGG 2 cut(s) 394, 750
BmsI GCATC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 172, 712
BplI GAGNNNNNCTC 1 cut(s) 787
Bpu10I CCTNAGC 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 704
BsaJI CCNNGG 2 cut(s) 748, 749
BsaXI ACNNNNNCTCC 2 cut(s) 769, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 394, 750
BseDI CCNNGG 2 cut(s) 748, 749
BseGI GGATG 6 cut(s) 50, 76, 238, 591, 595, 630
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 781, 806
BseRI GAGGAG 2 cut(s) 780, 792
BseXI GCAGC 2 cut(s) 406, 783
BshFI GGCC 2 cut(s) 373, 385
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 507, 790
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 43, 116
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 2 cut(s) 373, 385
Bsp1286I GDGCHC 3 cut(s) 507, 790, 802
Bsp143I GATC 4 cut(s) 292, 493, 646, 753
BspACI CCGC 2 cut(s) 157, 466
BspANI GGCC 2 cut(s) 373, 385
BspCNI CTCAG 2 cut(s) 780, 805
BspLI GGNNCC 4 cut(s) 146, 346, 648, 801
BspPI GGATC 3 cut(s) 641, 654, 761
BspQI GCTCTTC 2 cut(s) 158, 676
BspT107I GGYRCC 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 748, 749
BssMI GATC 4 cut(s) 292, 493, 646, 753
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 394, 750
Bst4CI ACNGT 4 cut(s) 194, 314, 344, 378
Bst6I CTCTTC 2 cut(s) 158, 676
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 767, 792
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 6 cut(s) 50, 76, 238, 591, 595, 630
BstKTI GATC 4 cut(s) 295, 496, 649, 756
BstMAI GTCTC 2 cut(s) 43, 116
BstMBI GATC 4 cut(s) 292, 493, 646, 753
BstMWI GCNNNNNNNGC 5 cut(s) 100, 165, 216, 675, 684
BstNI CCWGG 2 cut(s) 394, 750
BstNSI RCATGY 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 392, 748
BstV1I GCAGC 2 cut(s) 406, 783
BstV2I GAAGAC 2 cut(s) 172, 712
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 2 cut(s) 373, 385
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 6 cut(s) 50, 76, 238, 591, 595, 630
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 190, 214
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 268, 661
CviAII CATG 7 cut(s) 60, 88, 99, 272, 483, 675, 757
CviQI GTAC 2 cut(s) 268, 661
DdeI CTNAG 2 cut(s) 767, 792
DpnI GATC 4 cut(s) 294, 495, 648, 755
DpnII GATC 4 cut(s) 292, 493, 646, 753
DraIII CACNNNGTG 1 cut(s) 502
DrdI GACNNNNNNGTC 1 cut(s) 15
DseDI GACNNNNNNGTC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 158, 676
EarI CTCTTC 2 cut(s) 158, 676
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 392, 748
EcoT38I GRGCYC 1 cut(s) 802
FaeI CATG 7 cut(s) 63, 91, 102, 275, 486, 678, 760
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 591
FatI CATG 7 cut(s) 59, 87, 98, 271, 482, 674, 756
Fnu4HI GCNGC 2 cut(s) 420, 772
FokI GGATG 6 cut(s) 37, 83, 225, 598, 602, 637
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 2 cut(s) 420, 772
FspBI CTAG 2 cut(s) 630, 641
GluI GCNGC 2 cut(s) 420, 772
HaeIII GGCC 2 cut(s) 373, 385
HapII CCGG 1 cut(s) 525
Hin1II CATG 7 cut(s) 63, 91, 102, 275, 486, 678, 760
HinfI GANTC 4 cut(s) 82, 448, 548, 689
HpaII CCGG 1 cut(s) 525
HphI GGTGA 3 cut(s) 16, 302, 613
Hpy166II GTNNAC 3 cut(s) 148, 268, 707
Hpy188I TCNGA 4 cut(s) 27, 553, 598, 795
Hpy188III TCNNGA 4 cut(s) 296, 361, 650, 724
Hpy8I GTNNAC 3 cut(s) 148, 268, 707
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 4 cut(s) 194, 314, 344, 378
HpyCH4IV ACGT 2 cut(s) 177, 703
HpyCH4V TGCA 5 cut(s) 98, 190, 405, 486, 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 165, 216, 675, 684
HpyF3I CTNAG 2 cut(s) 767, 792
HpySE526I ACGT 2 cut(s) 177, 703
Hsp92II CATG 7 cut(s) 63, 91, 102, 275, 486, 678, 760
Kzo9I GATC 4 cut(s) 292, 493, 646, 753
LguI GCTCTTC 2 cut(s) 158, 676
LmnI GCTCC 4 cut(s) 510, 683, 793, 805
Lsp1109I GCAGC 2 cut(s) 406, 783
LweI GCATC 1 cut(s) 615
MaeI CTAG 2 cut(s) 630, 641
MaeII ACGT 2 cut(s) 177, 703
MaeIII GTNAC 4 cut(s) 431, 440, 601, 699
MalI GATC 4 cut(s) 294, 495, 648, 755
MboI GATC 4 cut(s) 292, 493, 646, 753
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 3 cut(s) 507, 790, 802
MluCI AATT 3 cut(s) 400, 538, 569
MmeI TCCRAC 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 811
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 2 cut(s) 394, 750
MvaI CCWGG 2 cut(s) 394, 750
MwoI GCNNNNNNNGC 5 cut(s) 100, 165, 216, 675, 684
NdeII GATC 4 cut(s) 292, 493, 646, 753
NlaIII CATG 7 cut(s) 63, 91, 102, 275, 486, 678, 760
NlaIV GGNNCC 4 cut(s) 146, 346, 648, 801
NmuCI GTSAC 3 cut(s) 440, 601, 699
NspI RCATGY 1 cut(s) 63
PasI CCCWGGG 1 cut(s) 749
PciI ACATGT 1 cut(s) 59
PciSI GCTCTTC 2 cut(s) 158, 676
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 82, 448, 548, 689
PflMI CCANNNNNTGG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 2 cut(s) 421, 773
PmaCI CACGTG 1 cut(s) 704
PmlI CACGTG 1 cut(s) 704
Ppu21I YACGTR 1 cut(s) 704
PscI ACATGT 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 392, 748
PspCI CACGTG 1 cut(s) 704
PspEI GGTNACC 1 cut(s) 601
PspGI CCWGG 2 cut(s) 392, 748
PspN4I GGNNCC 4 cut(s) 146, 346, 648, 801
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 269, 662
RsaNI GTAC 2 cut(s) 268, 661
SapI GCTCTTC 2 cut(s) 158, 676
SaqAI TTAA 1 cut(s) 811
SatI GCNGC 2 cut(s) 420, 772
Sau3AI GATC 4 cut(s) 292, 493, 646, 753
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 394, 750
SduI GDGCHC 3 cut(s) 507, 790, 802
SetI ASST 9 cut(s) 112, 180, 255, 306, 492, 603, 635, 706, 717
SfaNI GCATC 1 cut(s) 615
SinI GGWCC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 400, 538, 569
SsiI CCGC 2 cut(s) 157, 466
SspI AATATT 1 cut(s) 357
SspMI CTAG 2 cut(s) 630, 641
StyD4I CCNGG 2 cut(s) 392, 748
TaaI ACNGT 4 cut(s) 194, 314, 344, 378
TaiI ACGT 2 cut(s) 180, 706
TaqI TCGA 3 cut(s) 380, 492, 573
TaqII GACCGA 1 cut(s) 620
TasI AATT 3 cut(s) 400, 538, 569
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 4 cut(s) 82, 448, 548, 689
Tru1I TTAA 1 cut(s) 811
Tru9I TTAA 1 cut(s) 811
TscAI CASTG 2 cut(s) 197, 221
TseFI GTSAC 3 cut(s) 440, 601, 699
TseI GCWGC 2 cut(s) 419, 771
Tsp45I GTSAC 3 cut(s) 440, 601, 699
TspDTI ATGAA 6 cut(s) 39, 90, 95, 104, 561, 663
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 2 cut(s) 197, 221
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 145
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 630, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.